data_5F3O
#
_model_server_result.job_id            YWre0-YoVp4aj9Xm0Uhndg 
_model_server_result.datetime_utc      '2024-12-26 22:01:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5f3o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":302}' 
#
_entry.id    5F3O 
#
_exptl.entry_id    5F3O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5F3O 
_cell.length_a            46.329 
_cell.length_b            89.729 
_cell.length_c            100.196 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5F3O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OE1 GLU 51 B GLU 51 1_555 E MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? 
metalc ? metalc2 B OD2 ASP 55 B ASP 55 1_555 E MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc3 B OE2 GLU 119 B GLU 119 1_555 D MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5F3O 
_atom_sites.fract_transf_matrix[1][1]    0.021585 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011145 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00998 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 401 401 SO4 SO4 . 
D 3 MN B 1 301 301 MN MN . 
E 3 MN B 1 302 302 MN MN . 
F 2 SO4 B 1 303 402 SO4 SO4 . 
G 4 HOH A 1 501 16 HOH HOH . 
G 4 HOH A 2 502 88 HOH HOH . 
G 4 HOH A 3 503 30 HOH HOH . 
G 4 HOH A 4 504 43 HOH HOH . 
G 4 HOH A 5 505 80 HOH HOH . 
G 4 HOH A 6 506 94 HOH HOH . 
G 4 HOH A 7 507 9 HOH HOH . 
G 4 HOH A 8 508 6 HOH HOH . 
G 4 HOH A 9 509 109 HOH HOH . 
G 4 HOH A 10 510 74 HOH HOH . 
G 4 HOH A 11 511 65 HOH HOH . 
G 4 HOH A 12 512 79 HOH HOH . 
G 4 HOH A 13 513 45 HOH HOH . 
G 4 HOH A 14 514 20 HOH HOH . 
G 4 HOH A 15 515 2 HOH HOH . 
G 4 HOH A 16 516 97 HOH HOH . 
G 4 HOH A 17 517 99 HOH HOH . 
G 4 HOH A 18 518 1 HOH HOH . 
G 4 HOH A 19 519 11 HOH HOH . 
G 4 HOH A 20 520 103 HOH HOH . 
G 4 HOH A 21 521 91 HOH HOH . 
G 4 HOH A 22 522 13 HOH HOH . 
G 4 HOH A 23 523 81 HOH HOH . 
G 4 HOH A 24 524 98 HOH HOH . 
G 4 HOH A 25 525 84 HOH HOH . 
G 4 HOH A 26 526 7 HOH HOH . 
G 4 HOH A 27 527 21 HOH HOH . 
G 4 HOH A 28 528 36 HOH HOH . 
G 4 HOH A 29 529 31 HOH HOH . 
G 4 HOH A 30 530 56 HOH HOH . 
G 4 HOH A 31 531 12 HOH HOH . 
G 4 HOH A 32 532 40 HOH HOH . 
G 4 HOH A 33 533 111 HOH HOH . 
G 4 HOH A 34 534 25 HOH HOH . 
G 4 HOH A 35 535 61 HOH HOH . 
G 4 HOH A 36 536 5 HOH HOH . 
G 4 HOH A 37 537 73 HOH HOH . 
G 4 HOH A 38 538 104 HOH HOH . 
G 4 HOH A 39 539 35 HOH HOH . 
G 4 HOH A 40 540 85 HOH HOH . 
G 4 HOH A 41 541 106 HOH HOH . 
G 4 HOH A 42 542 59 HOH HOH . 
G 4 HOH A 43 543 4 HOH HOH . 
G 4 HOH A 44 544 72 HOH HOH . 
G 4 HOH A 45 545 105 HOH HOH . 
G 4 HOH A 46 546 53 HOH HOH . 
G 4 HOH A 47 547 22 HOH HOH . 
G 4 HOH A 48 548 15 HOH HOH . 
G 4 HOH A 49 549 48 HOH HOH . 
G 4 HOH A 50 550 90 HOH HOH . 
G 4 HOH A 51 551 63 HOH HOH . 
G 4 HOH A 52 552 87 HOH HOH . 
G 4 HOH A 53 553 93 HOH HOH . 
G 4 HOH A 54 554 92 HOH HOH . 
G 4 HOH A 55 555 89 HOH HOH . 
H 4 HOH B 1 401 64 HOH HOH . 
H 4 HOH B 2 402 102 HOH HOH . 
H 4 HOH B 3 403 3 HOH HOH . 
H 4 HOH B 4 404 69 HOH HOH . 
H 4 HOH B 5 405 68 HOH HOH . 
H 4 HOH B 6 406 8 HOH HOH . 
H 4 HOH B 7 407 110 HOH HOH . 
H 4 HOH B 8 408 96 HOH HOH . 
H 4 HOH B 9 409 83 HOH HOH . 
H 4 HOH B 10 410 100 HOH HOH . 
H 4 HOH B 11 411 41 HOH HOH . 
H 4 HOH B 12 412 29 HOH HOH . 
H 4 HOH B 13 413 57 HOH HOH . 
H 4 HOH B 14 414 18 HOH HOH . 
H 4 HOH B 15 415 66 HOH HOH . 
H 4 HOH B 16 416 14 HOH HOH . 
H 4 HOH B 17 417 33 HOH HOH . 
H 4 HOH B 18 418 47 HOH HOH . 
H 4 HOH B 19 419 77 HOH HOH . 
H 4 HOH B 20 420 108 HOH HOH . 
H 4 HOH B 21 421 42 HOH HOH . 
H 4 HOH B 22 422 39 HOH HOH . 
H 4 HOH B 23 423 51 HOH HOH . 
H 4 HOH B 24 424 76 HOH HOH . 
H 4 HOH B 25 425 62 HOH HOH . 
H 4 HOH B 26 426 19 HOH HOH . 
H 4 HOH B 27 427 27 HOH HOH . 
H 4 HOH B 28 428 78 HOH HOH . 
H 4 HOH B 29 429 23 HOH HOH . 
H 4 HOH B 30 430 17 HOH HOH . 
H 4 HOH B 31 431 28 HOH HOH . 
H 4 HOH B 32 432 44 HOH HOH . 
H 4 HOH B 33 433 32 HOH HOH . 
H 4 HOH B 34 434 26 HOH HOH . 
H 4 HOH B 35 435 54 HOH HOH . 
H 4 HOH B 36 436 46 HOH HOH . 
H 4 HOH B 37 437 37 HOH HOH . 
H 4 HOH B 38 438 60 HOH HOH . 
H 4 HOH B 39 439 70 HOH HOH . 
H 4 HOH B 40 440 107 HOH HOH . 
H 4 HOH B 41 441 86 HOH HOH . 
H 4 HOH B 42 442 24 HOH HOH . 
H 4 HOH B 43 443 58 HOH HOH . 
H 4 HOH B 44 444 101 HOH HOH . 
H 4 HOH B 45 445 95 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -11.381 
_atom_site.Cartn_y               2.29 
_atom_site.Cartn_z               -13.064 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        81.42 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#