data_5F4B # _model_server_result.job_id Nb5aZh2cFOxRQLozXCBX4Q _model_server_result.datetime_utc '2025-03-04 08:44:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5F4B # _exptl.entry_id 5F4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F4B _cell.length_a 63.58 _cell.length_b 63.58 _cell.length_c 188.537 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_467 y-1,x+1,-z+2 0 1 0 1 0 0 0 0 -1 -63.58 63.58 377.074 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 5F4B _atom_sites.fract_transf_matrix[1][1] 0.015728 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 201 2 FMN FMN . D 3 CL A 1 202 2 CL CL . E 2 FMN B 1 201 1 FMN FMN . F 3 CL B 1 202 1 CL CL . G 4 HOH A 1 301 3 HOH HOH . G 4 HOH A 2 302 16 HOH HOH . G 4 HOH A 3 303 8 HOH HOH . G 4 HOH A 4 304 7 HOH HOH . G 4 HOH A 5 305 39 HOH HOH . G 4 HOH A 6 306 4 HOH HOH . G 4 HOH A 7 307 9 HOH HOH . G 4 HOH A 8 308 10 HOH HOH . G 4 HOH A 9 309 21 HOH HOH . G 4 HOH A 10 310 14 HOH HOH . G 4 HOH A 11 311 15 HOH HOH . G 4 HOH A 12 312 12 HOH HOH . G 4 HOH A 13 313 26 HOH HOH . G 4 HOH A 14 314 37 HOH HOH . G 4 HOH A 15 315 1 HOH HOH . G 4 HOH A 16 316 23 HOH HOH . G 4 HOH A 17 317 43 HOH HOH . G 4 HOH A 18 318 19 HOH HOH . G 4 HOH A 19 319 32 HOH HOH . H 4 HOH B 1 301 51 HOH HOH . H 4 HOH B 2 302 49 HOH HOH . H 4 HOH B 3 303 44 HOH HOH . H 4 HOH B 4 304 45 HOH HOH . H 4 HOH B 5 305 20 HOH HOH . H 4 HOH B 6 306 40 HOH HOH . H 4 HOH B 7 307 27 HOH HOH . H 4 HOH B 8 308 11 HOH HOH . H 4 HOH B 9 309 34 HOH HOH . H 4 HOH B 10 310 22 HOH HOH . H 4 HOH B 11 311 5 HOH HOH . H 4 HOH B 12 312 29 HOH HOH . H 4 HOH B 13 313 35 HOH HOH . H 4 HOH B 14 314 46 HOH HOH . H 4 HOH B 15 315 6 HOH HOH . H 4 HOH B 16 316 17 HOH HOH . H 4 HOH B 17 317 33 HOH HOH . H 4 HOH B 18 318 13 HOH HOH . H 4 HOH B 19 319 28 HOH HOH . H 4 HOH B 20 320 2 HOH HOH . H 4 HOH B 21 321 18 HOH HOH . H 4 HOH B 22 322 24 HOH HOH . H 4 HOH B 23 323 30 HOH HOH . H 4 HOH B 24 324 47 HOH HOH . H 4 HOH B 25 325 50 HOH HOH . H 4 HOH B 26 326 36 HOH HOH . H 4 HOH B 27 327 41 HOH HOH . H 4 HOH B 28 328 42 HOH HOH . H 4 HOH B 29 329 48 HOH HOH . H 4 HOH B 30 330 25 HOH HOH . H 4 HOH B 31 331 52 HOH HOH . H 4 HOH B 32 332 38 HOH HOH . H 4 HOH B 33 333 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 -59.535 15.587 199.623 1 43.57 ? N1 FMN 201 A 1 HETATM 2 C C2 FMN . . . C 2 -59.957 15.091 198.411 1 43.75 ? C2 FMN 201 A 1 HETATM 3 O O2 FMN . . . C 2 -60.582 14.035 198.386 1 44.83 ? O2 FMN 201 A 1 HETATM 4 N N3 FMN . . . C 2 -59.675 15.774 197.243 1 40.96 ? N3 FMN 201 A 1 HETATM 5 C C4 FMN . . . C 2 -58.967 16.959 197.288 1 44.98 ? C4 FMN 201 A 1 HETATM 6 O O4 FMN . . . C 2 -58.716 17.567 196.248 1 44.45 ? O4 FMN 201 A 1 HETATM 7 C C4A FMN . . . C 2 -58.54 17.464 198.512 1 37.59 ? C4A FMN 201 A 1 HETATM 8 N N5 FMN . . . C 2 -57.83 18.646 198.581 1 36.13 ? N5 FMN 201 A 1 HETATM 9 C C5A FMN . . . C 2 -57.414 19.129 199.808 1 37.81 ? C5A FMN 201 A 1 HETATM 10 C C6 FMN . . . C 2 -56.699 20.319 199.877 1 37.03 ? C6 FMN 201 A 1 HETATM 11 C C7 FMN . . . C 2 -56.278 20.808 201.108 1 37.42 ? C7 FMN 201 A 1 HETATM 12 C C7M FMN . . . C 2 -55.505 22.092 201.179 1 35.24 ? C7M FMN 201 A 1 HETATM 13 C C8 FMN . . . C 2 -56.571 20.107 202.272 1 34.14 ? C8 FMN 201 A 1 HETATM 14 C C8M FMN . . . C 2 -56.119 20.631 203.603 1 31.48 ? C8M FMN 201 A 1 HETATM 15 C C9 FMN . . . C 2 -57.286 18.919 202.203 1 39.27 ? C9 FMN 201 A 1 HETATM 16 C C9A FMN . . . C 2 -57.708 18.427 200.973 1 37 ? C9A FMN 201 A 1 HETATM 17 N N10 FMN . . . C 2 -58.414 17.241 200.898 1 41.54 ? N10 FMN 201 A 1 HETATM 18 C C10 FMN . . . C 2 -58.83 16.768 199.676 1 39.18 ? C10 FMN 201 A 1 HETATM 19 C C1' FMN . . . C 2 -58.763 16.452 202.126 1 40.76 ? C1' FMN 201 A 1 HETATM 20 C C2' FMN . . . C 2 -57.648 15.482 202.503 1 57.04 ? C2' FMN 201 A 1 HETATM 21 O O2' FMN . . . C 2 -57.118 14.891 201.337 1 56.83 ? O2' FMN 201 A 1 HETATM 22 C C3' FMN . . . C 2 -58.147 14.378 203.433 1 65.46 ? C3' FMN 201 A 1 HETATM 23 O O3' FMN . . . C 2 -58.838 13.406 202.677 1 72.12 ? O3' FMN 201 A 1 HETATM 24 C C4' FMN . . . C 2 -59.049 14.896 204.552 1 68.99 ? C4' FMN 201 A 1 HETATM 25 O O4' FMN . . . C 2 -58.485 16.032 205.169 1 67.34 ? O4' FMN 201 A 1 HETATM 26 C C5' FMN . . . C 2 -59.235 13.815 205.607 1 71.75 ? C5' FMN 201 A 1 HETATM 27 O O5' FMN . . . C 2 -58.021 13.107 205.712 1 87.13 ? O5' FMN 201 A 1 HETATM 28 P P FMN . . . C 2 -57.813 11.952 206.813 1 91.5 ? P FMN 201 A 1 HETATM 29 O O1P FMN . . . C 2 -59.172 11.486 207.276 1 88.25 ? O1P FMN 201 A 1 HETATM 30 O O2P FMN . . . C 2 -57.082 10.798 206.169 1 81.6 ? O2P FMN 201 A 1 HETATM 31 O O3P FMN . . . C 2 -57.009 12.477 207.978 1 91.32 ? O3P FMN 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #