data_5F4C
#
_model_server_result.job_id            05aIXtZlosysbViP0uI5lQ 
_model_server_result.datetime_utc      '2024-10-10 06:25:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5f4c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":101}' 
#
_entry.id    5F4C 
#
_exptl.entry_id    5F4C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.35 
_cell.angle_gamma         90 
_cell.entry_id            5F4C 
_cell.length_a            29.362 
_cell.length_b            52.79 
_cell.length_c            58.812 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5F4C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 224 n n 
C1 C3 MLI sing 225 n n 
C1 H11 MLI sing 226 n n 
C1 H12 MLI sing 227 n n 
C2 O6 MLI doub 228 n n 
C2 O7 MLI sing 229 n n 
C3 O8 MLI doub 230 n n 
C3 O9 MLI sing 231 n n 
#
_atom_sites.entry_id                     5F4C 
_atom_sites.fract_transf_matrix[1][1]    0.034058 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001992 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018943 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017032 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MLI A 1 101 95 MLI MLI . 
D 2 MLI B 1 101 95 MLI MLI . 
E 3 HOH A 1 201 66 HOH HOH . 
E 3 HOH A 2 202 120 HOH HOH . 
E 3 HOH A 3 203 196 HOH HOH . 
E 3 HOH A 4 204 42 HOH HOH . 
E 3 HOH A 5 205 107 HOH HOH . 
E 3 HOH A 6 206 65 HOH HOH . 
E 3 HOH A 7 207 113 HOH HOH . 
E 3 HOH A 8 208 194 HOH HOH . 
E 3 HOH A 9 209 167 HOH HOH . 
E 3 HOH A 10 210 198 HOH HOH . 
E 3 HOH A 11 211 111 HOH HOH . 
E 3 HOH A 12 212 117 HOH HOH . 
E 3 HOH A 13 213 124 HOH HOH . 
E 3 HOH A 14 214 54 HOH HOH . 
E 3 HOH A 15 215 128 HOH HOH . 
E 3 HOH A 16 216 106 HOH HOH . 
E 3 HOH A 17 217 44 HOH HOH . 
E 3 HOH A 18 218 78 HOH HOH . 
E 3 HOH A 19 219 70 HOH HOH . 
E 3 HOH A 20 220 69 HOH HOH . 
E 3 HOH A 21 221 118 HOH HOH . 
E 3 HOH A 22 222 139 HOH HOH . 
E 3 HOH A 23 223 157 HOH HOH . 
E 3 HOH A 24 224 164 HOH HOH . 
E 3 HOH A 25 225 82 HOH HOH . 
E 3 HOH A 26 226 27 HOH HOH . 
E 3 HOH A 27 227 15 HOH HOH . 
E 3 HOH A 28 228 152 HOH HOH . 
E 3 HOH A 29 229 95 HOH HOH . 
E 3 HOH A 30 230 154 HOH HOH . 
E 3 HOH A 31 231 92 HOH HOH . 
E 3 HOH A 32 232 179 HOH HOH . 
E 3 HOH A 33 233 105 HOH HOH . 
E 3 HOH A 34 234 52 HOH HOH . 
E 3 HOH A 35 235 21 HOH HOH . 
E 3 HOH A 36 236 16 HOH HOH . 
E 3 HOH A 37 237 63 HOH HOH . 
E 3 HOH A 38 238 1 HOH HOH . 
E 3 HOH A 39 239 18 HOH HOH . 
E 3 HOH A 40 240 60 HOH HOH . 
E 3 HOH A 41 241 39 HOH HOH . 
E 3 HOH A 42 242 29 HOH HOH . 
E 3 HOH A 43 243 10 HOH HOH . 
E 3 HOH A 44 244 14 HOH HOH . 
E 3 HOH A 45 245 62 HOH HOH . 
E 3 HOH A 46 246 77 HOH HOH . 
E 3 HOH A 47 247 142 HOH HOH . 
E 3 HOH A 48 248 172 HOH HOH . 
E 3 HOH A 49 249 102 HOH HOH . 
E 3 HOH A 50 250 182 HOH HOH . 
E 3 HOH A 51 251 50 HOH HOH . 
E 3 HOH A 52 252 122 HOH HOH . 
E 3 HOH A 53 253 31 HOH HOH . 
E 3 HOH A 54 254 188 HOH HOH . 
E 3 HOH A 55 255 131 HOH HOH . 
E 3 HOH A 56 256 23 HOH HOH . 
E 3 HOH A 57 257 41 HOH HOH . 
E 3 HOH A 58 258 171 HOH HOH . 
E 3 HOH A 59 259 79 HOH HOH . 
E 3 HOH A 60 260 56 HOH HOH . 
E 3 HOH A 61 261 150 HOH HOH . 
E 3 HOH A 62 262 43 HOH HOH . 
E 3 HOH A 63 263 22 HOH HOH . 
E 3 HOH A 64 264 17 HOH HOH . 
E 3 HOH A 65 265 64 HOH HOH . 
E 3 HOH A 66 266 175 HOH HOH . 
E 3 HOH A 67 267 3 HOH HOH . 
E 3 HOH A 68 268 89 HOH HOH . 
E 3 HOH A 69 269 189 HOH HOH . 
E 3 HOH A 70 270 119 HOH HOH . 
E 3 HOH A 71 271 205 HOH HOH . 
E 3 HOH A 72 272 202 HOH HOH . 
E 3 HOH A 73 273 176 HOH HOH . 
E 3 HOH A 74 274 169 HOH HOH . 
E 3 HOH A 75 275 28 HOH HOH . 
E 3 HOH A 76 276 126 HOH HOH . 
E 3 HOH A 77 277 87 HOH HOH . 
E 3 HOH A 78 278 2 HOH HOH . 
E 3 HOH A 79 279 193 HOH HOH . 
E 3 HOH A 80 280 160 HOH HOH . 
E 3 HOH A 81 281 203 HOH HOH . 
E 3 HOH A 82 282 162 HOH HOH . 
E 3 HOH A 83 283 55 HOH HOH . 
E 3 HOH A 84 284 147 HOH HOH . 
E 3 HOH A 85 285 61 HOH HOH . 
E 3 HOH A 86 286 207 HOH HOH . 
E 3 HOH A 87 287 208 HOH HOH . 
E 3 HOH A 88 288 110 HOH HOH . 
E 3 HOH A 89 289 180 HOH HOH . 
E 3 HOH A 90 290 93 HOH HOH . 
E 3 HOH A 91 291 108 HOH HOH . 
E 3 HOH A 92 292 183 HOH HOH . 
E 3 HOH A 93 293 174 HOH HOH . 
E 3 HOH A 94 294 159 HOH HOH . 
E 3 HOH A 95 295 148 HOH HOH . 
E 3 HOH A 96 296 51 HOH HOH . 
E 3 HOH A 97 297 200 HOH HOH . 
E 3 HOH A 98 298 204 HOH HOH . 
E 3 HOH A 99 299 125 HOH HOH . 
E 3 HOH A 100 300 170 HOH HOH . 
E 3 HOH A 101 301 116 HOH HOH . 
E 3 HOH A 102 302 143 HOH HOH . 
E 3 HOH A 103 303 201 HOH HOH . 
E 3 HOH A 104 304 68 HOH HOH . 
E 3 HOH A 105 305 181 HOH HOH . 
E 3 HOH A 106 306 214 HOH HOH . 
E 3 HOH A 107 307 206 HOH HOH . 
E 3 HOH A 108 308 76 HOH HOH . 
E 3 HOH A 109 309 210 HOH HOH . 
E 3 HOH A 110 310 211 HOH HOH . 
E 3 HOH A 111 311 184 HOH HOH . 
F 3 HOH B 1 201 123 HOH HOH . 
F 3 HOH B 2 202 103 HOH HOH . 
F 3 HOH B 3 203 37 HOH HOH . 
F 3 HOH B 4 204 84 HOH HOH . 
F 3 HOH B 5 205 101 HOH HOH . 
F 3 HOH B 6 206 138 HOH HOH . 
F 3 HOH B 7 207 141 HOH HOH . 
F 3 HOH B 8 208 185 HOH HOH . 
F 3 HOH B 9 209 115 HOH HOH . 
F 3 HOH B 10 210 149 HOH HOH . 
F 3 HOH B 11 211 136 HOH HOH . 
F 3 HOH B 12 212 91 HOH HOH . 
F 3 HOH B 13 213 132 HOH HOH . 
F 3 HOH B 14 214 145 HOH HOH . 
F 3 HOH B 15 215 85 HOH HOH . 
F 3 HOH B 16 216 57 HOH HOH . 
F 3 HOH B 17 217 20 HOH HOH . 
F 3 HOH B 18 218 135 HOH HOH . 
F 3 HOH B 19 219 83 HOH HOH . 
F 3 HOH B 20 220 49 HOH HOH . 
F 3 HOH B 21 221 161 HOH HOH . 
F 3 HOH B 22 222 38 HOH HOH . 
F 3 HOH B 23 223 186 HOH HOH . 
F 3 HOH B 24 224 114 HOH HOH . 
F 3 HOH B 25 225 9 HOH HOH . 
F 3 HOH B 26 226 25 HOH HOH . 
F 3 HOH B 27 227 30 HOH HOH . 
F 3 HOH B 28 228 35 HOH HOH . 
F 3 HOH B 29 229 67 HOH HOH . 
F 3 HOH B 30 230 74 HOH HOH . 
F 3 HOH B 31 231 86 HOH HOH . 
F 3 HOH B 32 232 11 HOH HOH . 
F 3 HOH B 33 233 190 HOH HOH . 
F 3 HOH B 34 234 73 HOH HOH . 
F 3 HOH B 35 235 6 HOH HOH . 
F 3 HOH B 36 236 88 HOH HOH . 
F 3 HOH B 37 237 5 HOH HOH . 
F 3 HOH B 38 238 19 HOH HOH . 
F 3 HOH B 39 239 177 HOH HOH . 
F 3 HOH B 40 240 112 HOH HOH . 
F 3 HOH B 41 241 47 HOH HOH . 
F 3 HOH B 42 242 100 HOH HOH . 
F 3 HOH B 43 243 90 HOH HOH . 
F 3 HOH B 44 244 8 HOH HOH . 
F 3 HOH B 45 245 94 HOH HOH . 
F 3 HOH B 46 246 121 HOH HOH . 
F 3 HOH B 47 247 146 HOH HOH . 
F 3 HOH B 48 248 40 HOH HOH . 
F 3 HOH B 49 249 26 HOH HOH . 
F 3 HOH B 50 250 173 HOH HOH . 
F 3 HOH B 51 251 130 HOH HOH . 
F 3 HOH B 52 252 156 HOH HOH . 
F 3 HOH B 53 253 104 HOH HOH . 
F 3 HOH B 54 254 13 HOH HOH . 
F 3 HOH B 55 255 144 HOH HOH . 
F 3 HOH B 56 256 127 HOH HOH . 
F 3 HOH B 57 257 109 HOH HOH . 
F 3 HOH B 58 258 46 HOH HOH . 
F 3 HOH B 59 259 4 HOH HOH . 
F 3 HOH B 60 260 12 HOH HOH . 
F 3 HOH B 61 261 71 HOH HOH . 
F 3 HOH B 62 262 153 HOH HOH . 
F 3 HOH B 63 263 48 HOH HOH . 
F 3 HOH B 64 264 59 HOH HOH . 
F 3 HOH B 65 265 53 HOH HOH . 
F 3 HOH B 66 266 33 HOH HOH . 
F 3 HOH B 67 267 72 HOH HOH . 
F 3 HOH B 68 268 165 HOH HOH . 
F 3 HOH B 69 269 58 HOH HOH . 
F 3 HOH B 70 270 134 HOH HOH . 
F 3 HOH B 71 271 140 HOH HOH . 
F 3 HOH B 72 272 24 HOH HOH . 
F 3 HOH B 73 273 34 HOH HOH . 
F 3 HOH B 74 274 81 HOH HOH . 
F 3 HOH B 75 275 158 HOH HOH . 
F 3 HOH B 76 276 212 HOH HOH . 
F 3 HOH B 77 277 7 HOH HOH . 
F 3 HOH B 78 278 209 HOH HOH . 
F 3 HOH B 79 279 133 HOH HOH . 
F 3 HOH B 80 280 199 HOH HOH . 
F 3 HOH B 81 281 80 HOH HOH . 
F 3 HOH B 82 282 36 HOH HOH . 
F 3 HOH B 83 283 168 HOH HOH . 
F 3 HOH B 84 284 215 HOH HOH . 
F 3 HOH B 85 285 75 HOH HOH . 
F 3 HOH B 86 286 178 HOH HOH . 
F 3 HOH B 87 287 151 HOH HOH . 
F 3 HOH B 88 288 195 HOH HOH . 
F 3 HOH B 89 289 98 HOH HOH . 
F 3 HOH B 90 290 45 HOH HOH . 
F 3 HOH B 91 291 197 HOH HOH . 
F 3 HOH B 92 292 99 HOH HOH . 
F 3 HOH B 93 293 187 HOH HOH . 
F 3 HOH B 94 294 166 HOH HOH . 
F 3 HOH B 95 295 96 HOH HOH . 
F 3 HOH B 96 296 191 HOH HOH . 
F 3 HOH B 97 297 137 HOH HOH . 
F 3 HOH B 98 298 129 HOH HOH . 
F 3 HOH B 99 299 32 HOH HOH . 
F 3 HOH B 100 300 155 HOH HOH . 
F 3 HOH B 101 301 163 HOH HOH . 
F 3 HOH B 102 302 97 HOH HOH . 
F 3 HOH B 103 303 192 HOH HOH . 
F 3 HOH B 104 304 213 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . C 2 -9.255 -3.849 13.447 1 27.85 ? C1 MLI 101 A 1 
HETATM 2 C C2 MLI . . . C 2 -10.379 -3.097 14.106 1 33.46 ? C2 MLI 101 A 1 
HETATM 3 C C3 MLI . . . C 2 -8.715 -3.014 12.307 1 28.53 ? C3 MLI 101 A 1 
HETATM 4 O O6 MLI . . . C 2 -11.451 -2.899 13.417 1 37.49 ? O6 MLI 101 A 1 
HETATM 5 O O7 MLI . . . C 2 -10.163 -2.736 15.269 1 34.27 ? O7 MLI 101 A 1 
HETATM 6 O O8 MLI . . . C 2 -8.4 -3.605 11.251 1 27.92 ? O8 MLI 101 A 1 
HETATM 7 O O9 MLI . . . C 2 -8.575 -1.792 12.503 1 25.39 ? O9 MLI 101 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           7 
#