data_5F4E # _model_server_result.job_id yakYcPeunoVmCvHccB04Bg _model_server_result.datetime_utc '2025-07-03 09:23:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5F4E # _exptl.entry_id 5F4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.6 _cell.angle_gamma 90 _cell.entry_id 5F4E _cell.length_a 148 _cell.length_b 55.8 _cell.length_c 81.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 22 1_555 A SG CYS 128 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 4 A CYS 25 1_555 A SG CYS 131 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf3 A SG CYS 114 A CYS 135 1_555 A SG CYS 138 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf4 A SG CYS 118 A CYS 139 1_555 A SG CYS 144 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? disulf ? disulf5 A SG CYS 161 A CYS 182 1_555 A SG CYS 212 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 B SG CYS 8 B CYS 27 1_555 B SG CYS 36 B CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf7 B SG CYS 28 B CYS 47 1_555 B SG CYS 76 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? disulf ? disulf8 B SG CYS 37 B CYS 56 1_555 B SG CYS 80 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? disulf ? disulf9 B SG CYS 60 B CYS 79 1_555 B SG CYS 153 B CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? disulf ? disulf10 B SG CYS 67 B CYS 86 1_555 B SG CYS 124 B CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf11 B SG CYS 113 B CYS 132 1_555 B SG CYS 187 B CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? disulf ? disulf12 B SG CYS 117 B CYS 136 1_555 B SG CYS 167 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf13 B SG CYS 130 B CYS 149 1_555 B SG CYS 147 B CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? covale ? covale1 A ND2 ASN 183 A ASN 204 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5F4E _atom_sites.fract_transf_matrix[1][1] 0.006757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001635 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 301 261 NAG NAG . D 4 CL B 1 301 1 CL CL . E 5 GOL B 1 302 1 GOL GOL . F 6 HOH A 1 401 24 HOH HOH . F 6 HOH A 2 402 19 HOH HOH . F 6 HOH A 3 403 10 HOH HOH . F 6 HOH A 4 404 3 HOH HOH . F 6 HOH A 5 405 1 HOH HOH . F 6 HOH A 6 406 14 HOH HOH . F 6 HOH A 7 407 15 HOH HOH . F 6 HOH A 8 408 13 HOH HOH . F 6 HOH A 9 409 6 HOH HOH . F 6 HOH A 10 410 16 HOH HOH . F 6 HOH A 11 411 23 HOH HOH . F 6 HOH A 12 412 17 HOH HOH . G 6 HOH B 1 401 9 HOH HOH . G 6 HOH B 2 402 2 HOH HOH . G 6 HOH B 3 403 11 HOH HOH . G 6 HOH B 4 404 22 HOH HOH . G 6 HOH B 5 405 25 HOH HOH . G 6 HOH B 6 406 21 HOH HOH . G 6 HOH B 7 407 5 HOH HOH . G 6 HOH B 8 408 7 HOH HOH . G 6 HOH B 9 409 4 HOH HOH . G 6 HOH B 10 410 12 HOH HOH . G 6 HOH B 11 411 8 HOH HOH . G 6 HOH B 12 412 18 HOH HOH . G 6 HOH B 13 413 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 53.217 33.704 109.045 1 130.25 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . C 3 53.538 34.25 107.659 1 129.53 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . C 3 54.284 35.576 107.754 1 121.4 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . C 3 53.576 36.534 108.704 1 118.93 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . C 3 53.252 35.851 110.027 1 118.66 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . C 3 52.476 36.785 110.948 1 112.01 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . C 3 54.728 33.529 105.672 1 161.41 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . C 3 56.192 33.336 105.409 1 150.03 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . C 3 54.33 33.288 106.918 1 147.54 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . C 3 54.37 36.169 106.454 1 114.1 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . C 3 54.412 37.671 108.946 1 116.87 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . C 3 52.48 34.678 109.781 1 125.75 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . C 3 53.299 37.903 111.298 1 104.79 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . C 3 53.953 33.885 104.799 1 185.95 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #