data_5F4R
#
_model_server_result.job_id            kmNceRc6aksJVLDao1E3kg 
_model_server_result.datetime_utc      '2024-11-25 19:47:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5f4r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5F4R 
#
_exptl.entry_id    5F4R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5F4R 
_cell.length_a            67.679 
_cell.length_b            127.357 
_cell.length_c            192.064 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5F4R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 54 1_555 A SG CYS 26 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 71 A CYS 119 1_555 A SG CYS 84 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf3 A SG CYS 97 A CYS 218 1_555 A SG CYS 126 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 A SG CYS 107 A CYS 228 1_555 A SG CYS 118 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 A SG CYS 175 A CYS 296 1_555 A SG CYS 194 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 A SG CYS 240 A CYS 378 1_555 A SG CYS 304 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 A SG CYS 247 A CYS 385 1_555 A SG CYS 277 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 B SG CYS 6 C CYS 54 1_555 B SG CYS 26 C CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf9 B SG CYS 97 C CYS 218 1_555 B SG CYS 126 C CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf10 B SG CYS 107 C CYS 228 1_555 B SG CYS 118 C CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf11 B SG CYS 175 C CYS 296 1_555 B SG CYS 194 C CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf12 B SG CYS 240 C CYS 378 1_555 B SG CYS 304 C CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf13 B SG CYS 247 C CYS 385 1_555 B SG CYS 277 C CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 303 n n 
C1 O1 NAG sing 304 n n 
C1 O5 NAG sing 305 n n 
C1 H1 NAG sing 306 n n 
C2 C3 NAG sing 307 n n 
C2 N2 NAG sing 308 n n 
C2 H2 NAG sing 309 n n 
C3 C4 NAG sing 310 n n 
C3 O3 NAG sing 311 n n 
C3 H3 NAG sing 312 n n 
C4 C5 NAG sing 313 n n 
C4 O4 NAG sing 314 n n 
C4 H4 NAG sing 315 n n 
C5 C6 NAG sing 316 n n 
C5 O5 NAG sing 317 n n 
C5 H5 NAG sing 318 n n 
C6 O6 NAG sing 319 n n 
C6 H61 NAG sing 320 n n 
C6 H62 NAG sing 321 n n 
C7 C8 NAG sing 322 n n 
C7 N2 NAG sing 323 n n 
C7 O7 NAG doub 324 n n 
C8 H81 NAG sing 325 n n 
C8 H82 NAG sing 326 n n 
C8 H83 NAG sing 327 n n 
N2 HN2 NAG sing 328 n n 
O1 HO1 NAG sing 329 n n 
O3 HO3 NAG sing 330 n n 
O4 HO4 NAG sing 331 n n 
O6 HO6 NAG sing 332 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5F4R 
_atom_sites.fract_transf_matrix[1][1]    0.014776 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007852 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005207 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMT A 1 501 502 FMT FMT . 
D 3 NAG A 1 502 503 NAG NAG . 
E 3 NAG A 1 503 504 NAG NAG . 
F 3 NAG A 1 504 505 NAG NAG . 
G 3 NAG A 1 505 506 NAG NAG . 
H 3 NAG A 1 506 507 NAG NAG . 
I 3 NAG A 1 507 508 NAG NAG . 
J 4 5VF A 1 508 2 5VF DRG . 
K 2 FMT C 1 501 502 FMT FMT . 
L 3 NAG C 1 502 503 NAG NAG . 
M 3 NAG C 1 503 504 NAG NAG . 
N 3 NAG C 1 504 505 NAG NAG . 
O 3 NAG C 1 505 506 NAG NAG . 
P 3 NAG C 1 506 507 NAG NAG . 
Q 3 NAG C 1 507 508 NAG NAG . 
R 4 5VF C 1 508 1 5VF DRG . 
S 5 HOH A 1 601 3 HOH HOH . 
S 5 HOH A 2 602 34 HOH HOH . 
S 5 HOH A 3 603 11 HOH HOH . 
S 5 HOH A 4 604 25 HOH HOH . 
S 5 HOH A 5 605 29 HOH HOH . 
S 5 HOH A 6 606 15 HOH HOH . 
S 5 HOH A 7 607 30 HOH HOH . 
S 5 HOH A 8 608 2 HOH HOH . 
T 5 HOH C 1 601 7 HOH HOH . 
T 5 HOH C 2 602 33 HOH HOH . 
T 5 HOH C 3 603 4 HOH HOH . 
T 5 HOH C 4 604 31 HOH HOH . 
T 5 HOH C 5 605 16 HOH HOH . 
T 5 HOH C 6 606 1 HOH HOH . 
T 5 HOH C 7 607 5 HOH HOH . 
T 5 HOH C 8 608 14 HOH HOH . 
T 5 HOH C 9 609 21 HOH HOH . 
T 5 HOH C 10 610 6 HOH HOH . 
T 5 HOH C 11 611 28 HOH HOH . 
T 5 HOH C 12 612 8 HOH HOH . 
T 5 HOH C 13 613 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 3 -37.429 -48.102 27.424 1 99.17 ? C1 NAG 502 A 1 
HETATM 2 C C2 NAG . . . D 3 -37.018 -48.126 28.886 1 103.12 ? C2 NAG 502 A 1 
HETATM 3 C C3 NAG . . . D 3 -38.199 -48.551 29.749 1 103.75 ? C3 NAG 502 A 1 
HETATM 4 C C4 NAG . . . D 3 -39.401 -47.654 29.477 1 102.99 ? C4 NAG 502 A 1 
HETATM 5 C C5 NAG . . . D 3 -39.701 -47.583 27.98 1 101.87 ? C5 NAG 502 A 1 
HETATM 6 C C6 NAG . . . D 3 -40.763 -46.563 27.643 1 100.26 ? C6 NAG 502 A 1 
HETATM 7 C C7 NAG . . . D 3 -34.651 -48.556 29.364 1 93.48 ? C7 NAG 502 A 1 
HETATM 8 C C8 NAG . . . D 3 -33.594 -49.603 29.556 1 84.62 ? C8 NAG 502 A 1 
HETATM 9 N N2 NAG . . . D 3 -35.881 -49.008 29.098 1 101.79 ? N2 NAG 502 A 1 
HETATM 10 O O3 NAG . . . D 3 -37.833 -48.477 31.122 1 99.03 ? O3 NAG 502 A 1 
HETATM 11 O O4 NAG . . . D 3 -40.545 -48.163 30.151 1 103.19 ? O4 NAG 502 A 1 
HETATM 12 O O5 NAG . . . D 3 -38.522 -47.204 27.252 1 100.97 ? O5 NAG 502 A 1 
HETATM 13 O O6 NAG . . . D 3 -40.332 -45.682 26.615 1 99 ? O6 NAG 502 A 1 
HETATM 14 O O7 NAG . . . D 3 -34.402 -47.356 29.445 1 83.77 ? O7 NAG 502 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#