data_5F5H # _model_server_result.job_id GmIPAmOA6GH7-5Gsy_nfVA _model_server_result.datetime_utc '2024-11-15 03:09:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f5h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 5F5H # _exptl.entry_id 5F5H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F5H _cell.length_a 89.66 _cell.length_b 115.79 _cell.length_c 42.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F5H _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,H 1 1 B,D,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 C N3 C 2 C C 2 1_555 C N1 G 22 C G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N4 C 2 C C 2 1_555 C O6 G 22 C G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O2 C 2 C C 2 1_555 C N2 G 22 C G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N3 C 3 C C 3 1_555 C N1 G 21 C G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N4 C 3 C C 3 1_555 C O6 G 21 C G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C O2 C 3 C C 3 1_555 C N2 G 21 C G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N1 A 4 C A 4 1_555 C N3 U 20 C U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N6 A 4 C A 4 1_555 C O4 U 20 C U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N3 C 5 C C 5 1_555 C N1 G 18 C G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N4 C 5 C C 5 1_555 C O6 G 18 C G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C O2 C 5 C C 5 1_555 C N2 G 18 C G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N1 A 6 C A 6 1_555 C N3 U 17 C U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N6 A 6 C A 6 1_555 C O4 U 17 C U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N3 C 7 C C 7 1_555 C N1 G 16 C G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N4 C 7 C C 7 1_555 C O6 G 16 C G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C O2 C 7 C C 7 1_555 C N2 G 16 C G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N3 C 8 C C 8 1_555 C N1 G 15 C G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N4 C 8 C C 8 1_555 C O6 G 15 C G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C O2 C 8 C C 8 1_555 C N2 G 15 C G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog20 C N2 G 9 C G 9 1_555 C N3 A 14 C A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog21 D O2 C 2 D C 2 1_555 D N6 A 4 D A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-C MISPAIR' hydrog22 D O2 C 2 D C 2 1_555 D N4 C 5 D C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog23 D N4 C 2 D C 2 1_555 D N7 G 18 D G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 D N3 C 3 D C 3 1_555 D N1 G 21 D G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 D N4 C 3 D C 3 1_555 D O6 G 21 D G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 D O2 C 3 D C 3 1_555 D N2 G 21 D G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 D N1 A 4 D A 4 1_555 D N3 U 20 D U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 D N6 A 4 D A 4 1_555 D O4 U 20 D U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 D N3 C 5 D C 5 1_555 D N1 G 18 D G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 D N4 C 5 D C 5 1_555 D O6 G 18 D G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 D O2 C 5 D C 5 1_555 D N2 G 18 D G 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 D N1 A 6 D A 6 1_555 D N3 U 17 D U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 D N6 A 6 D A 6 1_555 D O4 U 17 D U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 D N3 C 7 D C 7 1_555 D N1 G 16 D G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 D N4 C 7 D C 7 1_555 D O6 G 16 D G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 D O2 C 7 D C 7 1_555 D N2 G 16 D G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 D N3 C 8 D C 8 1_555 D N1 G 15 D G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 D N4 C 8 D C 8 1_555 D O6 G 15 D G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 D O2 C 8 D C 8 1_555 D N2 G 15 D G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog40 D N2 G 9 D G 9 1_555 D N3 A 14 D A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 244 n n C1 C2 GOL sing 245 n n C1 H11 GOL sing 246 n n C1 H12 GOL sing 247 n n O1 HO1 GOL sing 248 n n C2 O2 GOL sing 249 n n C2 C3 GOL sing 250 n n C2 H2 GOL sing 251 n n O2 HO2 GOL sing 252 n n C3 O3 GOL sing 253 n n C3 H31 GOL sing 254 n n C3 H32 GOL sing 255 n n O3 HO3 GOL sing 256 n n # _atom_sites.entry_id 5F5H _atom_sites.fract_transf_matrix[1][1] 0.011153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 401 1 GOL GOL . F 4 HOH A 1 501 61 HOH HOH . F 4 HOH A 2 502 103 HOH HOH . F 4 HOH A 3 503 5 HOH HOH . F 4 HOH A 4 504 107 HOH HOH . F 4 HOH A 5 505 39 HOH HOH . F 4 HOH A 6 506 34 HOH HOH . F 4 HOH A 7 507 90 HOH HOH . F 4 HOH A 8 508 46 HOH HOH . F 4 HOH A 9 509 9 HOH HOH . F 4 HOH A 10 510 83 HOH HOH . F 4 HOH A 11 511 40 HOH HOH . F 4 HOH A 12 512 1 HOH HOH . F 4 HOH A 13 513 58 HOH HOH . F 4 HOH A 14 514 41 HOH HOH . F 4 HOH A 15 515 29 HOH HOH . F 4 HOH A 16 516 32 HOH HOH . F 4 HOH A 17 517 91 HOH HOH . F 4 HOH A 18 518 94 HOH HOH . F 4 HOH A 19 519 35 HOH HOH . F 4 HOH A 20 520 57 HOH HOH . F 4 HOH A 21 521 62 HOH HOH . F 4 HOH A 22 522 82 HOH HOH . F 4 HOH A 23 523 81 HOH HOH . F 4 HOH A 24 524 31 HOH HOH . F 4 HOH A 25 525 92 HOH HOH . F 4 HOH A 26 526 56 HOH HOH . F 4 HOH A 27 527 71 HOH HOH . F 4 HOH A 28 528 8 HOH HOH . F 4 HOH A 29 529 44 HOH HOH . F 4 HOH A 30 530 63 HOH HOH . F 4 HOH A 31 531 110 HOH HOH . F 4 HOH A 32 532 85 HOH HOH . F 4 HOH A 33 533 28 HOH HOH . F 4 HOH A 34 534 64 HOH HOH . F 4 HOH A 35 535 47 HOH HOH . F 4 HOH A 36 536 38 HOH HOH . F 4 HOH A 37 537 12 HOH HOH . F 4 HOH A 38 538 24 HOH HOH . F 4 HOH A 39 539 88 HOH HOH . G 4 HOH B 1 401 102 HOH HOH . G 4 HOH B 2 402 86 HOH HOH . G 4 HOH B 3 403 26 HOH HOH . G 4 HOH B 4 404 101 HOH HOH . G 4 HOH B 5 405 65 HOH HOH . G 4 HOH B 6 406 66 HOH HOH . G 4 HOH B 7 407 87 HOH HOH . G 4 HOH B 8 408 23 HOH HOH . G 4 HOH B 9 409 6 HOH HOH . G 4 HOH B 10 410 100 HOH HOH . G 4 HOH B 11 411 3 HOH HOH . G 4 HOH B 12 412 106 HOH HOH . G 4 HOH B 13 413 97 HOH HOH . G 4 HOH B 14 414 42 HOH HOH . G 4 HOH B 15 415 68 HOH HOH . G 4 HOH B 16 416 72 HOH HOH . G 4 HOH B 17 417 95 HOH HOH . G 4 HOH B 18 418 93 HOH HOH . G 4 HOH B 19 419 78 HOH HOH . G 4 HOH B 20 420 19 HOH HOH . G 4 HOH B 21 421 48 HOH HOH . G 4 HOH B 22 422 36 HOH HOH . G 4 HOH B 23 423 51 HOH HOH . H 4 HOH C 1 101 75 HOH HOH . H 4 HOH C 2 102 16 HOH HOH . H 4 HOH C 3 103 60 HOH HOH . H 4 HOH C 4 104 43 HOH HOH . H 4 HOH C 5 105 89 HOH HOH . H 4 HOH C 6 106 18 HOH HOH . H 4 HOH C 7 107 59 HOH HOH . H 4 HOH C 8 108 76 HOH HOH . H 4 HOH C 9 109 67 HOH HOH . H 4 HOH C 10 110 30 HOH HOH . H 4 HOH C 11 111 79 HOH HOH . H 4 HOH C 12 112 52 HOH HOH . H 4 HOH C 13 113 73 HOH HOH . H 4 HOH C 14 114 17 HOH HOH . H 4 HOH C 15 115 108 HOH HOH . H 4 HOH C 16 116 4 HOH HOH . H 4 HOH C 17 117 37 HOH HOH . H 4 HOH C 18 118 53 HOH HOH . H 4 HOH C 19 119 99 HOH HOH . H 4 HOH C 20 120 109 HOH HOH . H 4 HOH C 21 121 74 HOH HOH . I 4 HOH D 1 101 25 HOH HOH . I 4 HOH D 2 102 69 HOH HOH . I 4 HOH D 3 103 49 HOH HOH . I 4 HOH D 4 104 105 HOH HOH . I 4 HOH D 5 105 54 HOH HOH . I 4 HOH D 6 106 27 HOH HOH . I 4 HOH D 7 107 96 HOH HOH . I 4 HOH D 8 108 77 HOH HOH . I 4 HOH D 9 109 70 HOH HOH . I 4 HOH D 10 110 50 HOH HOH . I 4 HOH D 11 111 21 HOH HOH . I 4 HOH D 12 112 98 HOH HOH . I 4 HOH D 13 113 55 HOH HOH . I 4 HOH D 14 114 20 HOH HOH . I 4 HOH D 15 115 80 HOH HOH . I 4 HOH D 16 116 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 117.8 32.257 49.101 1 65.88 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . E 3 117.572 31.299 50.141 1 64.02 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . E 3 119.064 33.057 49.408 1 66.83 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . E 3 120.218 32.284 49.058 1 66.62 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . E 3 119.068 34.368 48.626 1 67.18 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . E 3 118.449 35.401 49.399 1 66.92 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #