data_5F5W # _model_server_result.job_id 6Zqj-o9W31Ud8grjWPiDYg _model_server_result.datetime_utc '2024-11-04 22:55:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":300}' # _entry.id 5F5W # _exptl.entry_id 5F5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.371 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(glycylsulfamoyl)adenosine" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F5W _cell.length_a 101.829 _cell.length_b 130.01 _cell.length_c 145.52 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F 1 1,2 B,C,G,H,K 2 1 D,E,I,J 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C12 H17 N7 O7 S' _chem_comp.formula_weight 403.371 _chem_comp.id G5A _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(glycylsulfamoyl)adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N3S G5A sing 83 n n N CA G5A sing 84 n n N HN G5A sing 85 n n N HNA G5A sing 86 n n O C G5A doub 87 n n S O5' G5A sing 88 n n S O2S G5A doub 89 n n N1 C2 G5A sing 90 n y C2 H2 G5A sing 91 n n N3 C2 G5A doub 92 n y C4 N3 G5A sing 93 n y C5 C4 G5A doub 94 n y C5 C6 G5A sing 95 n y C6 N1 G5A doub 96 n y N6 C6 G5A sing 97 n n N6 HN6 G5A sing 98 n n N6 HN6A G5A sing 99 n n N7 C5 G5A sing 100 n y N7 C8 G5A doub 101 n y C8 N9 G5A sing 102 n y C8 H8 G5A sing 103 n n N9 C4 G5A sing 104 n y N9 C1' G5A sing 105 n n CA C G5A sing 106 n n CA HA G5A sing 107 n n CA HAA G5A sing 108 n n C1' C2' G5A sing 109 n n C1' H1' G5A sing 110 n n O1S S G5A doub 111 n n C2' O2' G5A sing 112 n n C2' H2' G5A sing 113 n n O2' HO2' G5A sing 114 n n C3' C2' G5A sing 115 n n C3' O3' G5A sing 116 n n N3S S G5A sing 117 n n N3S HN3S G5A sing 118 n n C4' C3' G5A sing 119 n n C4' O4' G5A sing 120 n n C4' H4' G5A sing 121 n n O4' C1' G5A sing 122 n n C5' C4' G5A sing 123 n n C5' H5' G5A sing 124 n n C5' "H5'A" G5A sing 125 n n O5' C5' G5A sing 126 n n C3' H16 G5A sing 127 n n O3' H17 G5A sing 128 n n # _atom_sites.entry_id 5F5W _atom_sites.fract_transf_matrix[1][1] 0.00982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 G5A A 1 300 300 G5A G5A . G 2 G5A B 1 300 300 G5A G5A . H 2 G5A C 1 300 300 G5A G5A . I 2 G5A D 1 300 300 G5A G5A . J 2 G5A E 1 300 300 G5A G5A . K 3 HOH B 1 401 2 HOH HOH . K 3 HOH B 2 402 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C G5A . . . J 2 -96.544 47.984 6.829 1 74.65 ? C G5A 300 E 1 HETATM 2 N N G5A . . . J 2 -96.335 45.529 6.9 1 74.65 ? N G5A 300 E 1 HETATM 3 O O G5A . . . J 2 -95.349 48.051 7.066 1 74.65 ? O G5A 300 E 1 HETATM 4 S S G5A . . . J 2 -96.713 50.533 6.566 1 74.65 ? S G5A 300 E 1 HETATM 5 N N1 G5A . . . J 2 -91.615 56.93 10.265 1 74.65 ? N1 G5A 300 E 1 HETATM 6 C C2 G5A . . . J 2 -92.582 56.848 11.186 1 74.65 ? C2 G5A 300 E 1 HETATM 7 N N3 G5A . . . J 2 -93.613 56.009 11.034 1 74.65 ? N3 G5A 300 E 1 HETATM 8 C C4 G5A . . . J 2 -93.693 55.226 9.935 1 74.65 ? C4 G5A 300 E 1 HETATM 9 C C5 G5A . . . J 2 -92.71 55.29 8.964 1 74.65 ? C5 G5A 300 E 1 HETATM 10 C C6 G5A . . . J 2 -91.647 56.172 9.149 1 74.65 ? C6 G5A 300 E 1 HETATM 11 N N6 G5A . . . J 2 -90.649 56.273 8.235 1 74.65 ? N6 G5A 300 E 1 HETATM 12 N N7 G5A . . . J 2 -93.049 54.41 8.004 1 74.65 ? N7 G5A 300 E 1 HETATM 13 C C8 G5A . . . J 2 -94.21 53.819 8.376 1 74.65 ? C8 G5A 300 E 1 HETATM 14 N N9 G5A . . . J 2 -94.597 54.331 9.553 1 74.65 ? N9 G5A 300 E 1 HETATM 15 C CA G5A . . . J 2 -97.244 46.651 6.712 1 74.65 ? CA G5A 300 E 1 HETATM 16 C C1' G5A . . . J 2 -95.795 53.984 10.359 1 74.65 ? C1' G5A 300 E 1 HETATM 17 O O1S G5A . . . J 2 -97.767 51.43 6.187 1 74.65 ? O1S G5A 300 E 1 HETATM 18 C C2' G5A . . . J 2 -97.098 54.488 9.758 1 74.65 ? C2' G5A 300 E 1 HETATM 19 O O2' G5A . . . J 2 -98.012 54.676 10.847 1 74.65 ? O2' G5A 300 E 1 HETATM 20 O O2S G5A . . . J 2 -95.658 50.581 5.603 1 74.65 ? O2S G5A 300 E 1 HETATM 21 C C3' G5A . . . J 2 -97.549 53.314 8.925 1 74.65 ? C3' G5A 300 E 1 HETATM 22 O O3' G5A . . . J 2 -98.964 53.293 8.692 1 74.65 ? O3' G5A 300 E 1 HETATM 23 N N3S G5A . . . J 2 -97.317 49.052 6.646 1 74.65 ? N3S G5A 300 E 1 HETATM 24 C C4' G5A . . . J 2 -97.147 52.166 9.835 1 74.65 ? C4' G5A 300 E 1 HETATM 25 O O4' G5A . . . J 2 -95.904 52.563 10.419 1 74.65 ? O4' G5A 300 E 1 HETATM 26 C C5' G5A . . . J 2 -97.004 50.833 9.127 1 74.65 ? C5' G5A 300 E 1 HETATM 27 O O5' G5A . . . J 2 -96.143 50.979 8.013 1 74.65 ? O5' G5A 300 E 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 27 #