data_5F5Z # _model_server_result.job_id gmqwtTmpMu750NPv72Hzpw _model_server_result.datetime_utc '2024-11-21 23:38:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5F5Z # _exptl.entry_id 5F5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 509.667 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-~{N}-[3-[[5-methyl-2-[[4-(4-methylpiperazin-1-yl)phenyl]amino]pyrimidin-4-yl]amino]phenyl]propane-2-sulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F5Z _cell.length_a 34.6 _cell.length_b 47.37 _cell.length_c 77.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H35 N7 O2 S' _chem_comp.formula_weight 509.667 _chem_comp.id 5VY _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-~{N}-[3-[[5-methyl-2-[[4-(4-methylpiperazin-1-yl)phenyl]amino]pyrimidin-4-yl]amino]phenyl]propane-2-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C09 5VY doub 1 n y C10 N11 5VY sing 2 n n C10 C18 5VY sing 3 n y C13 C12 5VY sing 4 n n C13 N14 5VY sing 5 n n C15 N14 5VY sing 6 n n C17 N11 5VY sing 7 n n C17 C16 5VY sing 8 n n C21 C02 5VY doub 9 n y C21 N20 5VY sing 10 n y C21 N22 5VY sing 11 n n C24 C23 5VY doub 12 n y C24 C25 5VY sing 13 n y C28 S27 5VY sing 14 n n C28 C29 5VY sing 15 n n C28 C30 5VY sing 16 n n C28 C31 5VY sing 17 n n C01 C02 5VY sing 18 n n C02 C03 5VY sing 19 n y C03 N04 5VY doub 20 n y N04 C05 5VY sing 21 n y C05 N06 5VY sing 22 n n C05 N20 5VY doub 23 n y N06 C07 5VY sing 24 n n C07 C08 5VY doub 25 n y C07 C19 5VY sing 26 n y C08 C09 5VY sing 27 n y N11 C12 5VY sing 28 n n N14 C16 5VY sing 29 n n C18 C19 5VY doub 30 n y N22 C23 5VY sing 31 n n C23 C36 5VY sing 32 n y C25 N26 5VY sing 33 n n C25 C34 5VY doub 34 n y N26 S27 5VY sing 35 n n S27 O32 5VY doub 36 n n S27 O33 5VY doub 37 n n C34 C35 5VY sing 38 n y C35 C36 5VY doub 39 n y C13 H131 5VY sing 40 n n C13 H132 5VY sing 41 n n C15 H151 5VY sing 42 n n C15 H152 5VY sing 43 n n C15 H153 5VY sing 44 n n C17 H171 5VY sing 45 n n C17 H172 5VY sing 46 n n C24 H241 5VY sing 47 n n C01 H011 5VY sing 48 n n C01 H012 5VY sing 49 n n C01 H013 5VY sing 50 n n C03 H031 5VY sing 51 n n N06 H061 5VY sing 52 n n C08 H081 5VY sing 53 n n C09 H091 5VY sing 54 n n C12 H121 5VY sing 55 n n C12 H122 5VY sing 56 n n C16 H161 5VY sing 57 n n C16 H162 5VY sing 58 n n C18 H181 5VY sing 59 n n C19 H191 5VY sing 60 n n N22 H221 5VY sing 61 n n N26 H261 5VY sing 62 n n C29 H291 5VY sing 63 n n C29 H292 5VY sing 64 n n C29 H293 5VY sing 65 n n C30 H301 5VY sing 66 n n C30 H302 5VY sing 67 n n C30 H303 5VY sing 68 n n C31 H311 5VY sing 69 n n C31 H312 5VY sing 70 n n C31 H313 5VY sing 71 n n C34 H341 5VY sing 72 n n C35 H351 5VY sing 73 n n C36 H361 5VY sing 74 n n # _atom_sites.entry_id 5F5Z _atom_sites.fract_transf_matrix[1][1] 0.028902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5VY A 1 201 1 5VY LIG . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 4 HOH A 1 301 66 HOH HOH . E 4 HOH A 2 302 31 HOH HOH . E 4 HOH A 3 303 56 HOH HOH . E 4 HOH A 4 304 39 HOH HOH . E 4 HOH A 5 305 2 HOH HOH . E 4 HOH A 6 306 67 HOH HOH . E 4 HOH A 7 307 54 HOH HOH . E 4 HOH A 8 308 28 HOH HOH . E 4 HOH A 9 309 20 HOH HOH . E 4 HOH A 10 310 29 HOH HOH . E 4 HOH A 11 311 6 HOH HOH . E 4 HOH A 12 312 44 HOH HOH . E 4 HOH A 13 313 43 HOH HOH . E 4 HOH A 14 314 9 HOH HOH . E 4 HOH A 15 315 22 HOH HOH . E 4 HOH A 16 316 72 HOH HOH . E 4 HOH A 17 317 12 HOH HOH . E 4 HOH A 18 318 41 HOH HOH . E 4 HOH A 19 319 14 HOH HOH . E 4 HOH A 20 320 16 HOH HOH . E 4 HOH A 21 321 34 HOH HOH . E 4 HOH A 22 322 4 HOH HOH . E 4 HOH A 23 323 37 HOH HOH . E 4 HOH A 24 324 74 HOH HOH . E 4 HOH A 25 325 17 HOH HOH . E 4 HOH A 26 326 40 HOH HOH . E 4 HOH A 27 327 42 HOH HOH . E 4 HOH A 28 328 80 HOH HOH . E 4 HOH A 29 329 11 HOH HOH . E 4 HOH A 30 330 24 HOH HOH . E 4 HOH A 31 331 3 HOH HOH . E 4 HOH A 32 332 47 HOH HOH . E 4 HOH A 33 333 53 HOH HOH . E 4 HOH A 34 334 60 HOH HOH . E 4 HOH A 35 335 38 HOH HOH . E 4 HOH A 36 336 1 HOH HOH . E 4 HOH A 37 337 18 HOH HOH . E 4 HOH A 38 338 51 HOH HOH . E 4 HOH A 39 339 48 HOH HOH . E 4 HOH A 40 340 30 HOH HOH . E 4 HOH A 41 341 59 HOH HOH . E 4 HOH A 42 342 33 HOH HOH . E 4 HOH A 43 343 15 HOH HOH . E 4 HOH A 44 344 13 HOH HOH . E 4 HOH A 45 345 8 HOH HOH . E 4 HOH A 46 346 75 HOH HOH . E 4 HOH A 47 347 7 HOH HOH . E 4 HOH A 48 348 10 HOH HOH . E 4 HOH A 49 349 68 HOH HOH . E 4 HOH A 50 350 36 HOH HOH . E 4 HOH A 51 351 19 HOH HOH . E 4 HOH A 52 352 35 HOH HOH . E 4 HOH A 53 353 65 HOH HOH . E 4 HOH A 54 354 73 HOH HOH . E 4 HOH A 55 355 49 HOH HOH . E 4 HOH A 56 356 58 HOH HOH . E 4 HOH A 57 357 26 HOH HOH . E 4 HOH A 58 358 21 HOH HOH . E 4 HOH A 59 359 45 HOH HOH . E 4 HOH A 60 360 46 HOH HOH . E 4 HOH A 61 361 71 HOH HOH . E 4 HOH A 62 362 52 HOH HOH . E 4 HOH A 63 363 69 HOH HOH . E 4 HOH A 64 364 76 HOH HOH . E 4 HOH A 65 365 79 HOH HOH . E 4 HOH A 66 366 62 HOH HOH . E 4 HOH A 67 367 32 HOH HOH . E 4 HOH A 68 368 55 HOH HOH . E 4 HOH A 69 369 5 HOH HOH . E 4 HOH A 70 370 23 HOH HOH . E 4 HOH A 71 371 64 HOH HOH . E 4 HOH A 72 372 63 HOH HOH . E 4 HOH A 73 373 25 HOH HOH . E 4 HOH A 74 374 78 HOH HOH . E 4 HOH A 75 375 77 HOH HOH . E 4 HOH A 76 376 70 HOH HOH . E 4 HOH A 77 377 61 HOH HOH . E 4 HOH A 78 378 27 HOH HOH . E 4 HOH A 79 379 57 HOH HOH . E 4 HOH A 80 380 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 5VY . . . B 2 63.601 81.414 81.535 1 22.31 ? C10 5VY 201 A 1 HETATM 2 C C13 5VY . . . B 2 61.806 84.723 81.869 1 27.77 ? C13 5VY 201 A 1 HETATM 3 C C15 5VY . . . B 2 61.513 86.065 83.939 1 29.9 ? C15 5VY 201 A 1 HETATM 4 C C17 5VY . . . B 2 63.961 83.188 83.118 1 27.96 ? C17 5VY 201 A 1 HETATM 5 C C21 5VY . . . B 2 62.941 76.349 77.219 1 17.33 ? C21 5VY 201 A 1 HETATM 6 C C24 5VY . . . B 2 59.788 78.008 76.399 1 19.05 ? C24 5VY 201 A 1 HETATM 7 C C28 5VY . . . B 2 57.055 78.783 73.56 1 20.22 ? C28 5VY 201 A 1 HETATM 8 C C01 5VY . . . B 2 63.347 74.304 75.724 1 19.49 ? C01 5VY 201 A 1 HETATM 9 C C02 5VY . . . B 2 63.78 75.326 76.725 1 18.41 ? C02 5VY 201 A 1 HETATM 10 C C03 5VY . . . B 2 65.098 75.3 77.214 1 18.55 ? C03 5VY 201 A 1 HETATM 11 N N04 5VY . . . B 2 65.536 76.209 78.088 1 17.43 ? N04 5VY 201 A 1 HETATM 12 C C05 5VY . . . B 2 64.743 77.179 78.583 1 18.16 ? C05 5VY 201 A 1 HETATM 13 N N06 5VY . . . B 2 65.218 78.059 79.503 1 19.81 ? N06 5VY 201 A 1 HETATM 14 C C07 5VY . . . B 2 64.629 79.126 80.125 1 20.47 ? C07 5VY 201 A 1 HETATM 15 C C08 5VY . . . B 2 63.333 79.616 79.862 1 20.57 ? C08 5VY 201 A 1 HETATM 16 C C09 5VY . . . B 2 62.841 80.743 80.55 1 21.17 ? C09 5VY 201 A 1 HETATM 17 N N11 5VY . . . B 2 63.07 82.527 82.177 1 25.75 ? N11 5VY 201 A 1 HETATM 18 C C12 5VY . . . B 2 62.258 83.36 81.307 1 26.96 ? C12 5VY 201 A 1 HETATM 19 N N14 5VY . . . B 2 62.053 84.827 83.333 1 29.96 ? N14 5VY 201 A 1 HETATM 20 C C16 5VY . . . B 2 63.424 84.478 83.786 1 30.51 ? C16 5VY 201 A 1 HETATM 21 C C18 5VY . . . B 2 64.903 80.919 81.79 1 22.24 ? C18 5VY 201 A 1 HETATM 22 C C19 5VY . . . B 2 65.404 79.789 81.1 1 21.72 ? C19 5VY 201 A 1 HETATM 23 N N20 5VY . . . B 2 63.465 77.221 78.142 1 18.84 ? N20 5VY 201 A 1 HETATM 24 N N22 5VY . . . B 2 61.637 76.456 76.82 1 17.96 ? N22 5VY 201 A 1 HETATM 25 C C23 5VY . . . B 2 60.7 77.369 77.247 1 18.07 ? C23 5VY 201 A 1 HETATM 26 C C25 5VY . . . B 2 58.848 78.919 76.89 1 19.6 ? C25 5VY 201 A 1 HETATM 27 N N26 5VY . . . B 2 57.958 79.563 76.101 1 17.91 ? N26 5VY 201 A 1 HETATM 28 S S27 5VY . . . B 2 58.155 79.934 74.456 1 19.84 ? S27 5VY 201 A 1 HETATM 29 C C29 5VY . . . B 2 57.625 77.344 73.76 1 20.22 ? C29 5VY 201 A 1 HETATM 30 C C30 5VY . . . B 2 55.613 78.931 74.137 1 21.69 ? C30 5VY 201 A 1 HETATM 31 C C31 5VY . . . B 2 57.169 79.286 72.098 1 20.16 ? C31 5VY 201 A 1 HETATM 32 O O32 5VY . . . B 2 59.668 79.779 74.006 1 19.61 ? O32 5VY 201 A 1 HETATM 33 O O33 5VY . . . B 2 57.545 81.378 74.256 1 20.51 ? O33 5VY 201 A 1 HETATM 34 C C34 5VY . . . B 2 58.804 79.203 78.273 1 19.63 ? C34 5VY 201 A 1 HETATM 35 C C35 5VY . . . B 2 59.694 78.56 79.151 1 19.7 ? C35 5VY 201 A 1 HETATM 36 C C36 5VY . . . B 2 60.631 77.656 78.638 1 17.27 ? C36 5VY 201 A 1 HETATM 37 H H131 5VY . . . B 2 60.844 84.838 81.698 1 33.32 ? H131 5VY 201 A 1 HETATM 38 H H132 5VY . . . B 2 62.3 85.438 81.41 1 33.32 ? H132 5VY 201 A 1 HETATM 39 H H151 5VY . . . B 2 61.063 86.59 83.241 1 35.89 ? H151 5VY 201 A 1 HETATM 40 H H152 5VY . . . B 2 60.856 85.835 84.633 1 35.89 ? H152 5VY 201 A 1 HETATM 41 H H153 5VY . . . B 2 62.246 86.598 84.319 1 35.89 ? H153 5VY 201 A 1 HETATM 42 H H171 5VY . . . B 2 64.182 82.546 83.83 1 33.55 ? H171 5VY 201 A 1 HETATM 43 H H172 5VY . . . B 2 64.791 83.415 82.643 1 33.55 ? H172 5VY 201 A 1 HETATM 44 H H241 5VY . . . B 2 59.816 77.821 75.438 1 22.86 ? H241 5VY 201 A 1 HETATM 45 H H011 5VY . . . B 2 62.623 73.758 76.105 1 23.39 ? H011 5VY 201 A 1 HETATM 46 H H012 5VY . . . B 2 63.024 74.756 74.913 1 23.39 ? H012 5VY 201 A 1 HETATM 47 H H013 5VY . . . B 2 64.108 73.725 75.496 1 23.39 ? H013 5VY 201 A 1 HETATM 48 H H031 5VY . . . B 2 65.718 74.616 76.883 1 22.26 ? H031 5VY 201 A 1 HETATM 49 H H061 5VY . . . B 2 66.087 77.911 79.751 1 23.77 ? H061 5VY 201 A 1 HETATM 50 H H081 5VY . . . B 2 62.775 79.177 79.185 1 24.69 ? H081 5VY 201 A 1 HETATM 51 H H091 5VY . . . B 2 61.936 81.064 80.348 1 25.41 ? H091 5VY 201 A 1 HETATM 52 H H121 5VY . . . B 2 61.451 82.849 81.067 1 32.36 ? H121 5VY 201 A 1 HETATM 53 H H122 5VY . . . B 2 62.769 83.526 80.484 1 32.36 ? H122 5VY 201 A 1 HETATM 54 H H161 5VY . . . B 2 63.413 84.35 84.76 1 36.61 ? H161 5VY 201 A 1 HETATM 55 H H162 5VY . . . B 2 64.028 85.222 83.57 1 36.61 ? H162 5VY 201 A 1 HETATM 56 H H181 5VY . . . B 2 65.464 81.362 82.462 1 26.69 ? H181 5VY 201 A 1 HETATM 57 H H191 5VY . . . B 2 66.31 79.468 81.296 1 26.06 ? H191 5VY 201 A 1 HETATM 58 H H221 5VY . . . B 2 61.431 76.019 76.042 1 21.55 ? H221 5VY 201 A 1 HETATM 59 H H261 5VY . . . B 2 57.173 79.825 76.492 1 21.49 ? H261 5VY 201 A 1 HETATM 60 H H291 5VY . . . B 2 56.934 76.684 73.529 1 24.27 ? H291 5VY 201 A 1 HETATM 61 H H292 5VY . . . B 2 58.406 77.218 73.178 1 24.27 ? H292 5VY 201 A 1 HETATM 62 H H293 5VY . . . B 2 57.892 77.225 74.698 1 24.27 ? H293 5VY 201 A 1 HETATM 63 H H301 5VY . . . B 2 54.985 78.41 73.587 1 26.02 ? H301 5VY 201 A 1 HETATM 64 H H302 5VY . . . B 2 55.593 78.597 75.061 1 26.02 ? H302 5VY 201 A 1 HETATM 65 H H303 5VY . . . B 2 55.35 79.878 74.125 1 26.02 ? H303 5VY 201 A 1 HETATM 66 H H311 5VY . . . B 2 56.674 78.679 71.503 1 24.19 ? H311 5VY 201 A 1 HETATM 67 H H312 5VY . . . B 2 58.114 79.307 71.831 1 24.19 ? H312 5VY 201 A 1 HETATM 68 H H313 5VY . . . B 2 56.79 80.19 72.032 1 24.19 ? H313 5VY 201 A 1 HETATM 69 H H341 5VY . . . B 2 58.142 79.837 78.623 1 23.55 ? H341 5VY 201 A 1 HETATM 70 H H351 5VY . . . B 2 59.668 78.754 80.112 1 23.64 ? H351 5VY 201 A 1 HETATM 71 H H361 5VY . . . B 2 61.257 77.213 79.251 1 20.72 ? H361 5VY 201 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 71 #