data_5F60 # _model_server_result.job_id dmDDJWD-iYsaVMV-T8J5NA _model_server_result.datetime_utc '2024-11-24 16:45:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f60 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5F60 # _exptl.entry_id 5F60 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F60 _cell.length_a 37.97 _cell.length_b 44.31 _cell.length_c 78.77 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F60 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 157 n n C1 C2 EDO sing 158 n n C1 H11 EDO sing 159 n n C1 H12 EDO sing 160 n n O1 HO1 EDO sing 161 n n C2 O2 EDO sing 162 n n C2 H21 EDO sing 163 n n C2 H22 EDO sing 164 n n O2 HO2 EDO sing 165 n n # _atom_sites.entry_id 5F60 _atom_sites.fract_transf_matrix[1][1] 0.026337 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5VZ A 1 201 1 5VZ LIG . C 3 PEG A 1 202 1 PEG PEG . D 4 EDO A 1 203 1 EDO EDO . E 4 EDO A 1 204 2 EDO EDO . F 4 EDO A 1 205 3 EDO EDO . G 5 HOH A 1 301 132 HOH HOH . G 5 HOH A 2 302 135 HOH HOH . G 5 HOH A 3 303 155 HOH HOH . G 5 HOH A 4 304 29 HOH HOH . G 5 HOH A 5 305 142 HOH HOH . G 5 HOH A 6 306 121 HOH HOH . G 5 HOH A 7 307 138 HOH HOH . G 5 HOH A 8 308 125 HOH HOH . G 5 HOH A 9 309 160 HOH HOH . G 5 HOH A 10 310 145 HOH HOH . G 5 HOH A 11 311 35 HOH HOH . G 5 HOH A 12 312 122 HOH HOH . G 5 HOH A 13 313 87 HOH HOH . G 5 HOH A 14 314 51 HOH HOH . G 5 HOH A 15 315 174 HOH HOH . G 5 HOH A 16 316 188 HOH HOH . G 5 HOH A 17 317 115 HOH HOH . G 5 HOH A 18 318 102 HOH HOH . G 5 HOH A 19 319 124 HOH HOH . G 5 HOH A 20 320 77 HOH HOH . G 5 HOH A 21 321 37 HOH HOH . G 5 HOH A 22 322 10 HOH HOH . G 5 HOH A 23 323 86 HOH HOH . G 5 HOH A 24 324 95 HOH HOH . G 5 HOH A 25 325 93 HOH HOH . G 5 HOH A 26 326 151 HOH HOH . G 5 HOH A 27 327 31 HOH HOH . G 5 HOH A 28 328 128 HOH HOH . G 5 HOH A 29 329 120 HOH HOH . G 5 HOH A 30 330 166 HOH HOH . G 5 HOH A 31 331 7 HOH HOH . G 5 HOH A 32 332 1 HOH HOH . G 5 HOH A 33 333 112 HOH HOH . G 5 HOH A 34 334 80 HOH HOH . G 5 HOH A 35 335 137 HOH HOH . G 5 HOH A 36 336 28 HOH HOH . G 5 HOH A 37 337 70 HOH HOH . G 5 HOH A 38 338 161 HOH HOH . G 5 HOH A 39 339 57 HOH HOH . G 5 HOH A 40 340 21 HOH HOH . G 5 HOH A 41 341 184 HOH HOH . G 5 HOH A 42 342 43 HOH HOH . G 5 HOH A 43 343 11 HOH HOH . G 5 HOH A 44 344 49 HOH HOH . G 5 HOH A 45 345 48 HOH HOH . G 5 HOH A 46 346 33 HOH HOH . G 5 HOH A 47 347 89 HOH HOH . G 5 HOH A 48 348 26 HOH HOH . G 5 HOH A 49 349 3 HOH HOH . G 5 HOH A 50 350 19 HOH HOH . G 5 HOH A 51 351 52 HOH HOH . G 5 HOH A 52 352 47 HOH HOH . G 5 HOH A 53 353 67 HOH HOH . G 5 HOH A 54 354 53 HOH HOH . G 5 HOH A 55 355 60 HOH HOH . G 5 HOH A 56 356 36 HOH HOH . G 5 HOH A 57 357 118 HOH HOH . G 5 HOH A 58 358 169 HOH HOH . G 5 HOH A 59 359 91 HOH HOH . G 5 HOH A 60 360 159 HOH HOH . G 5 HOH A 61 361 119 HOH HOH . G 5 HOH A 62 362 71 HOH HOH . G 5 HOH A 63 363 32 HOH HOH . G 5 HOH A 64 364 117 HOH HOH . G 5 HOH A 65 365 104 HOH HOH . G 5 HOH A 66 366 42 HOH HOH . G 5 HOH A 67 367 4 HOH HOH . G 5 HOH A 68 368 106 HOH HOH . G 5 HOH A 69 369 79 HOH HOH . G 5 HOH A 70 370 6 HOH HOH . G 5 HOH A 71 371 63 HOH HOH . G 5 HOH A 72 372 2 HOH HOH . G 5 HOH A 73 373 101 HOH HOH . G 5 HOH A 74 374 75 HOH HOH . G 5 HOH A 75 375 44 HOH HOH . G 5 HOH A 76 376 72 HOH HOH . G 5 HOH A 77 377 110 HOH HOH . G 5 HOH A 78 378 25 HOH HOH . G 5 HOH A 79 379 176 HOH HOH . G 5 HOH A 80 380 20 HOH HOH . G 5 HOH A 81 381 5 HOH HOH . G 5 HOH A 82 382 82 HOH HOH . G 5 HOH A 83 383 141 HOH HOH . G 5 HOH A 84 384 22 HOH HOH . G 5 HOH A 85 385 92 HOH HOH . G 5 HOH A 86 386 18 HOH HOH . G 5 HOH A 87 387 56 HOH HOH . G 5 HOH A 88 388 175 HOH HOH . G 5 HOH A 89 389 15 HOH HOH . G 5 HOH A 90 390 17 HOH HOH . G 5 HOH A 91 391 158 HOH HOH . G 5 HOH A 92 392 179 HOH HOH . G 5 HOH A 93 393 14 HOH HOH . G 5 HOH A 94 394 34 HOH HOH . G 5 HOH A 95 395 24 HOH HOH . G 5 HOH A 96 396 108 HOH HOH . G 5 HOH A 97 397 154 HOH HOH . G 5 HOH A 98 398 170 HOH HOH . G 5 HOH A 99 399 64 HOH HOH . G 5 HOH A 100 400 143 HOH HOH . G 5 HOH A 101 401 50 HOH HOH . G 5 HOH A 102 402 8 HOH HOH . G 5 HOH A 103 403 61 HOH HOH . G 5 HOH A 104 404 76 HOH HOH . G 5 HOH A 105 405 41 HOH HOH . G 5 HOH A 106 406 12 HOH HOH . G 5 HOH A 107 407 98 HOH HOH . G 5 HOH A 108 408 131 HOH HOH . G 5 HOH A 109 409 130 HOH HOH . G 5 HOH A 110 410 23 HOH HOH . G 5 HOH A 111 411 27 HOH HOH . G 5 HOH A 112 412 165 HOH HOH . G 5 HOH A 113 413 152 HOH HOH . G 5 HOH A 114 414 127 HOH HOH . G 5 HOH A 115 415 39 HOH HOH . G 5 HOH A 116 416 68 HOH HOH . G 5 HOH A 117 417 38 HOH HOH . G 5 HOH A 118 418 157 HOH HOH . G 5 HOH A 119 419 109 HOH HOH . G 5 HOH A 120 420 78 HOH HOH . G 5 HOH A 121 421 73 HOH HOH . G 5 HOH A 122 422 13 HOH HOH . G 5 HOH A 123 423 45 HOH HOH . G 5 HOH A 124 424 84 HOH HOH . G 5 HOH A 125 425 59 HOH HOH . G 5 HOH A 126 426 114 HOH HOH . G 5 HOH A 127 427 16 HOH HOH . G 5 HOH A 128 428 97 HOH HOH . G 5 HOH A 129 429 111 HOH HOH . G 5 HOH A 130 430 177 HOH HOH . G 5 HOH A 131 431 136 HOH HOH . G 5 HOH A 132 432 153 HOH HOH . G 5 HOH A 133 433 74 HOH HOH . G 5 HOH A 134 434 107 HOH HOH . G 5 HOH A 135 435 58 HOH HOH . G 5 HOH A 136 436 171 HOH HOH . G 5 HOH A 137 437 133 HOH HOH . G 5 HOH A 138 438 190 HOH HOH . G 5 HOH A 139 439 172 HOH HOH . G 5 HOH A 140 440 65 HOH HOH . G 5 HOH A 141 441 9 HOH HOH . G 5 HOH A 142 442 182 HOH HOH . G 5 HOH A 143 443 147 HOH HOH . G 5 HOH A 144 444 173 HOH HOH . G 5 HOH A 145 445 185 HOH HOH . G 5 HOH A 146 446 162 HOH HOH . G 5 HOH A 147 447 90 HOH HOH . G 5 HOH A 148 448 99 HOH HOH . G 5 HOH A 149 449 186 HOH HOH . G 5 HOH A 150 450 100 HOH HOH . G 5 HOH A 151 451 105 HOH HOH . G 5 HOH A 152 452 83 HOH HOH . G 5 HOH A 153 453 126 HOH HOH . G 5 HOH A 154 454 139 HOH HOH . G 5 HOH A 155 455 148 HOH HOH . G 5 HOH A 156 456 46 HOH HOH . G 5 HOH A 157 457 103 HOH HOH . G 5 HOH A 158 458 164 HOH HOH . G 5 HOH A 159 459 180 HOH HOH . G 5 HOH A 160 460 96 HOH HOH . G 5 HOH A 161 461 189 HOH HOH . G 5 HOH A 162 462 94 HOH HOH . G 5 HOH A 163 463 150 HOH HOH . G 5 HOH A 164 464 54 HOH HOH . G 5 HOH A 165 465 62 HOH HOH . G 5 HOH A 166 466 55 HOH HOH . G 5 HOH A 167 467 140 HOH HOH . G 5 HOH A 168 468 30 HOH HOH . G 5 HOH A 169 469 187 HOH HOH . G 5 HOH A 170 470 123 HOH HOH . G 5 HOH A 171 471 168 HOH HOH . G 5 HOH A 172 472 40 HOH HOH . G 5 HOH A 173 473 183 HOH HOH . G 5 HOH A 174 474 144 HOH HOH . G 5 HOH A 175 475 66 HOH HOH . G 5 HOH A 176 476 69 HOH HOH . G 5 HOH A 177 477 134 HOH HOH . G 5 HOH A 178 478 129 HOH HOH . G 5 HOH A 179 479 163 HOH HOH . G 5 HOH A 180 480 88 HOH HOH . G 5 HOH A 181 481 167 HOH HOH . G 5 HOH A 182 482 149 HOH HOH . G 5 HOH A 183 483 146 HOH HOH . G 5 HOH A 184 484 113 HOH HOH . G 5 HOH A 185 485 156 HOH HOH . G 5 HOH A 186 486 85 HOH HOH . G 5 HOH A 187 487 116 HOH HOH . G 5 HOH A 188 488 178 HOH HOH . G 5 HOH A 189 489 81 HOH HOH . G 5 HOH A 190 490 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 25.2 41.412 85.201 1 17.39 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . D 4 25.464 40.389 86.158 1 18.94 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . D 4 24.218 42.388 85.826 1 16.02 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . D 4 22.997 41.7 86.113 1 12.74 ? O2 EDO 203 A 1 HETATM 5 H H11 EDO . . . D 4 26.125 41.928 84.937 1 20.87 ? H11 EDO 203 A 1 HETATM 6 H H12 EDO . . . D 4 24.773 40.978 84.294 1 20.87 ? H12 EDO 203 A 1 HETATM 7 H HO1 EDO . . . D 4 26.089 39.752 85.785 1 22.73 ? HO1 EDO 203 A 1 HETATM 8 H H21 EDO . . . D 4 24.637 42.798 86.747 1 19.22 ? H21 EDO 203 A 1 HETATM 9 H H22 EDO . . . D 4 24.026 43.214 85.138 1 19.22 ? H22 EDO 203 A 1 HETATM 10 H HO2 EDO . . . D 4 22.367 42.316 86.511 1 15.29 ? HO2 EDO 203 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #