data_5F61
#
_model_server_result.job_id            r5jPA8IBy6YISG80ZHlCQg 
_model_server_result.datetime_utc      '2024-10-18 16:24:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5f61 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":205}' 
#
_entry.id    5F61 
#
_exptl.entry_id    5F61 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.74 
_cell.angle_gamma         90 
_cell.entry_id            5F61 
_cell.length_a            34.85 
_cell.length_b            78.51 
_cell.length_c            47.09 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5F61 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,N 1 1 
B,F,G,H,I,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 157 n n 
C1 C2 EDO sing 158 n n 
C1 H11 EDO sing 159 n n 
C1 H12 EDO sing 160 n n 
O1 HO1 EDO sing 161 n n 
C2 O2 EDO sing 162 n n 
C2 H21 EDO sing 163 n n 
C2 H22 EDO sing 164 n n 
O2 HO2 EDO sing 165 n n 
#
_atom_sites.entry_id                     5F61 
_atom_sites.fract_transf_matrix[1][1]    0.028694 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000872 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012737 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021246 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 201 201 EDO EDO . 
D 2 EDO A 1 202 202 EDO EDO . 
E 3 5W0 A 1 203 203 5W0 5W0 . 
F 2 EDO B 1 201 201 EDO EDO . 
G 2 EDO B 1 202 202 EDO EDO . 
H 2 EDO B 1 203 203 EDO EDO . 
I 2 EDO B 1 204 204 EDO EDO . 
J 2 EDO B 1 205 205 EDO EDO . 
K 2 EDO B 1 206 206 EDO EDO . 
L 2 EDO B 1 207 207 EDO EDO . 
M 3 5W0 B 1 208 208 5W0 5W0 . 
N 4 HOH A 1 301 301 HOH HOH . 
N 4 HOH A 2 302 305 HOH HOH . 
N 4 HOH A 3 303 303 HOH HOH . 
N 4 HOH A 4 304 304 HOH HOH . 
N 4 HOH A 5 305 306 HOH HOH . 
N 4 HOH A 6 306 308 HOH HOH . 
N 4 HOH A 7 307 307 HOH HOH . 
N 4 HOH A 8 308 315 HOH HOH . 
N 4 HOH A 9 309 309 HOH HOH . 
N 4 HOH A 10 310 310 HOH HOH . 
N 4 HOH A 11 311 302 HOH HOH . 
N 4 HOH A 12 312 379 HOH HOH . 
N 4 HOH A 13 313 311 HOH HOH . 
N 4 HOH A 14 314 313 HOH HOH . 
N 4 HOH A 15 315 312 HOH HOH . 
N 4 HOH A 16 316 441 HOH HOH . 
N 4 HOH A 17 317 314 HOH HOH . 
N 4 HOH A 18 318 316 HOH HOH . 
N 4 HOH A 19 319 322 HOH HOH . 
N 4 HOH A 20 320 320 HOH HOH . 
N 4 HOH A 21 321 321 HOH HOH . 
N 4 HOH A 22 322 318 HOH HOH . 
N 4 HOH A 23 323 319 HOH HOH . 
N 4 HOH A 24 324 317 HOH HOH . 
N 4 HOH A 25 325 323 HOH HOH . 
N 4 HOH A 26 326 324 HOH HOH . 
N 4 HOH A 27 327 325 HOH HOH . 
N 4 HOH A 28 328 326 HOH HOH . 
N 4 HOH A 29 329 330 HOH HOH . 
N 4 HOH A 30 330 339 HOH HOH . 
N 4 HOH A 31 331 328 HOH HOH . 
N 4 HOH A 32 332 329 HOH HOH . 
N 4 HOH A 33 333 327 HOH HOH . 
N 4 HOH A 34 334 333 HOH HOH . 
N 4 HOH A 35 335 332 HOH HOH . 
N 4 HOH A 36 336 337 HOH HOH . 
N 4 HOH A 37 337 338 HOH HOH . 
N 4 HOH A 38 338 334 HOH HOH . 
N 4 HOH A 39 339 335 HOH HOH . 
N 4 HOH A 40 340 336 HOH HOH . 
N 4 HOH A 41 341 331 HOH HOH . 
N 4 HOH A 42 342 347 HOH HOH . 
N 4 HOH A 43 343 341 HOH HOH . 
N 4 HOH A 44 344 342 HOH HOH . 
N 4 HOH A 45 345 343 HOH HOH . 
N 4 HOH A 46 346 340 HOH HOH . 
N 4 HOH A 47 347 346 HOH HOH . 
N 4 HOH A 48 348 348 HOH HOH . 
N 4 HOH A 49 349 344 HOH HOH . 
N 4 HOH A 50 350 353 HOH HOH . 
N 4 HOH A 51 351 352 HOH HOH . 
N 4 HOH A 52 352 365 HOH HOH . 
N 4 HOH A 53 353 345 HOH HOH . 
N 4 HOH A 54 354 350 HOH HOH . 
N 4 HOH A 55 355 355 HOH HOH . 
N 4 HOH A 56 356 360 HOH HOH . 
N 4 HOH A 57 357 357 HOH HOH . 
N 4 HOH A 58 358 356 HOH HOH . 
N 4 HOH A 59 359 349 HOH HOH . 
N 4 HOH A 60 360 364 HOH HOH . 
N 4 HOH A 61 361 367 HOH HOH . 
N 4 HOH A 62 362 363 HOH HOH . 
N 4 HOH A 63 363 354 HOH HOH . 
N 4 HOH A 64 364 351 HOH HOH . 
N 4 HOH A 65 365 362 HOH HOH . 
N 4 HOH A 66 366 359 HOH HOH . 
N 4 HOH A 67 367 366 HOH HOH . 
N 4 HOH A 68 368 303 HOH HOH . 
N 4 HOH A 69 369 358 HOH HOH . 
N 4 HOH A 70 370 369 HOH HOH . 
N 4 HOH A 71 371 368 HOH HOH . 
N 4 HOH A 72 372 370 HOH HOH . 
N 4 HOH A 73 373 372 HOH HOH . 
N 4 HOH A 74 374 374 HOH HOH . 
N 4 HOH A 75 375 373 HOH HOH . 
N 4 HOH A 76 376 378 HOH HOH . 
N 4 HOH A 77 377 377 HOH HOH . 
N 4 HOH A 78 378 382 HOH HOH . 
N 4 HOH A 79 379 381 HOH HOH . 
N 4 HOH A 80 380 375 HOH HOH . 
N 4 HOH A 81 381 383 HOH HOH . 
N 4 HOH A 82 382 376 HOH HOH . 
N 4 HOH A 83 383 380 HOH HOH . 
N 4 HOH A 84 384 384 HOH HOH . 
N 4 HOH A 85 385 386 HOH HOH . 
N 4 HOH A 86 386 385 HOH HOH . 
N 4 HOH A 87 387 388 HOH HOH . 
N 4 HOH A 88 388 394 HOH HOH . 
N 4 HOH A 89 389 390 HOH HOH . 
N 4 HOH A 90 390 387 HOH HOH . 
N 4 HOH A 91 391 391 HOH HOH . 
N 4 HOH A 92 392 389 HOH HOH . 
N 4 HOH A 93 393 392 HOH HOH . 
N 4 HOH A 94 394 395 HOH HOH . 
N 4 HOH A 95 395 399 HOH HOH . 
N 4 HOH A 96 396 401 HOH HOH . 
N 4 HOH A 97 397 402 HOH HOH . 
N 4 HOH A 98 398 396 HOH HOH . 
N 4 HOH A 99 399 400 HOH HOH . 
N 4 HOH A 100 400 403 HOH HOH . 
N 4 HOH A 101 401 405 HOH HOH . 
N 4 HOH A 102 402 371 HOH HOH . 
N 4 HOH A 103 403 404 HOH HOH . 
N 4 HOH A 104 404 407 HOH HOH . 
N 4 HOH A 105 405 361 HOH HOH . 
N 4 HOH A 106 406 409 HOH HOH . 
N 4 HOH A 107 407 408 HOH HOH . 
N 4 HOH A 108 408 410 HOH HOH . 
N 4 HOH A 109 409 411 HOH HOH . 
N 4 HOH A 110 410 406 HOH HOH . 
N 4 HOH A 111 411 398 HOH HOH . 
N 4 HOH A 112 412 412 HOH HOH . 
N 4 HOH A 113 413 413 HOH HOH . 
N 4 HOH A 114 414 405 HOH HOH . 
N 4 HOH A 115 415 414 HOH HOH . 
N 4 HOH A 116 416 415 HOH HOH . 
N 4 HOH A 117 417 416 HOH HOH . 
N 4 HOH A 118 418 417 HOH HOH . 
N 4 HOH A 119 419 357 HOH HOH . 
N 4 HOH A 120 420 397 HOH HOH . 
N 4 HOH A 121 421 419 HOH HOH . 
N 4 HOH A 122 422 418 HOH HOH . 
N 4 HOH A 123 423 420 HOH HOH . 
N 4 HOH A 124 424 421 HOH HOH . 
N 4 HOH A 125 425 422 HOH HOH . 
N 4 HOH A 126 426 423 HOH HOH . 
N 4 HOH A 127 427 424 HOH HOH . 
N 4 HOH A 128 428 425 HOH HOH . 
N 4 HOH A 129 429 426 HOH HOH . 
N 4 HOH A 130 430 435 HOH HOH . 
O 4 HOH B 1 301 301 HOH HOH . 
O 4 HOH B 2 302 437 HOH HOH . 
O 4 HOH B 3 303 302 HOH HOH . 
O 4 HOH B 4 304 305 HOH HOH . 
O 4 HOH B 5 305 436 HOH HOH . 
O 4 HOH B 6 306 304 HOH HOH . 
O 4 HOH B 7 307 306 HOH HOH . 
O 4 HOH B 8 308 307 HOH HOH . 
O 4 HOH B 9 309 308 HOH HOH . 
O 4 HOH B 10 310 310 HOH HOH . 
O 4 HOH B 11 311 312 HOH HOH . 
O 4 HOH B 12 312 314 HOH HOH . 
O 4 HOH B 13 313 311 HOH HOH . 
O 4 HOH B 14 314 315 HOH HOH . 
O 4 HOH B 15 315 317 HOH HOH . 
O 4 HOH B 16 316 313 HOH HOH . 
O 4 HOH B 17 317 319 HOH HOH . 
O 4 HOH B 18 318 316 HOH HOH . 
O 4 HOH B 19 319 322 HOH HOH . 
O 4 HOH B 20 320 320 HOH HOH . 
O 4 HOH B 21 321 328 HOH HOH . 
O 4 HOH B 22 322 327 HOH HOH . 
O 4 HOH B 23 323 318 HOH HOH . 
O 4 HOH B 24 324 321 HOH HOH . 
O 4 HOH B 25 325 309 HOH HOH . 
O 4 HOH B 26 326 324 HOH HOH . 
O 4 HOH B 27 327 330 HOH HOH . 
O 4 HOH B 28 328 323 HOH HOH . 
O 4 HOH B 29 329 335 HOH HOH . 
O 4 HOH B 30 330 331 HOH HOH . 
O 4 HOH B 31 331 326 HOH HOH . 
O 4 HOH B 32 332 334 HOH HOH . 
O 4 HOH B 33 333 329 HOH HOH . 
O 4 HOH B 34 334 333 HOH HOH . 
O 4 HOH B 35 335 325 HOH HOH . 
O 4 HOH B 36 336 340 HOH HOH . 
O 4 HOH B 37 337 332 HOH HOH . 
O 4 HOH B 38 338 342 HOH HOH . 
O 4 HOH B 39 339 338 HOH HOH . 
O 4 HOH B 40 340 337 HOH HOH . 
O 4 HOH B 41 341 336 HOH HOH . 
O 4 HOH B 42 342 339 HOH HOH . 
O 4 HOH B 43 343 351 HOH HOH . 
O 4 HOH B 44 344 341 HOH HOH . 
O 4 HOH B 45 345 345 HOH HOH . 
O 4 HOH B 46 346 343 HOH HOH . 
O 4 HOH B 47 347 442 HOH HOH . 
O 4 HOH B 48 348 352 HOH HOH . 
O 4 HOH B 49 349 350 HOH HOH . 
O 4 HOH B 50 350 353 HOH HOH . 
O 4 HOH B 51 351 348 HOH HOH . 
O 4 HOH B 52 352 347 HOH HOH . 
O 4 HOH B 53 353 349 HOH HOH . 
O 4 HOH B 54 354 344 HOH HOH . 
O 4 HOH B 55 355 354 HOH HOH . 
O 4 HOH B 56 356 355 HOH HOH . 
O 4 HOH B 57 357 346 HOH HOH . 
O 4 HOH B 58 358 356 HOH HOH . 
O 4 HOH B 59 359 361 HOH HOH . 
O 4 HOH B 60 360 359 HOH HOH . 
O 4 HOH B 61 361 362 HOH HOH . 
O 4 HOH B 62 362 360 HOH HOH . 
O 4 HOH B 63 363 364 HOH HOH . 
O 4 HOH B 64 364 365 HOH HOH . 
O 4 HOH B 65 365 358 HOH HOH . 
O 4 HOH B 66 366 363 HOH HOH . 
O 4 HOH B 67 367 367 HOH HOH . 
O 4 HOH B 68 368 366 HOH HOH . 
O 4 HOH B 69 369 368 HOH HOH . 
O 4 HOH B 70 370 369 HOH HOH . 
O 4 HOH B 71 371 370 HOH HOH . 
O 4 HOH B 72 372 378 HOH HOH . 
O 4 HOH B 73 373 371 HOH HOH . 
O 4 HOH B 74 374 373 HOH HOH . 
O 4 HOH B 75 375 372 HOH HOH . 
O 4 HOH B 76 376 381 HOH HOH . 
O 4 HOH B 77 377 374 HOH HOH . 
O 4 HOH B 78 378 375 HOH HOH . 
O 4 HOH B 79 379 376 HOH HOH . 
O 4 HOH B 80 380 380 HOH HOH . 
O 4 HOH B 81 381 385 HOH HOH . 
O 4 HOH B 82 382 383 HOH HOH . 
O 4 HOH B 83 383 382 HOH HOH . 
O 4 HOH B 84 384 386 HOH HOH . 
O 4 HOH B 85 385 387 HOH HOH . 
O 4 HOH B 86 386 379 HOH HOH . 
O 4 HOH B 87 387 384 HOH HOH . 
O 4 HOH B 88 388 388 HOH HOH . 
O 4 HOH B 89 389 440 HOH HOH . 
O 4 HOH B 90 390 377 HOH HOH . 
O 4 HOH B 91 391 389 HOH HOH . 
O 4 HOH B 92 392 390 HOH HOH . 
O 4 HOH B 93 393 444 HOH HOH . 
O 4 HOH B 94 394 394 HOH HOH . 
O 4 HOH B 95 395 391 HOH HOH . 
O 4 HOH B 96 396 392 HOH HOH . 
O 4 HOH B 97 397 395 HOH HOH . 
O 4 HOH B 98 398 403 HOH HOH . 
O 4 HOH B 99 399 393 HOH HOH . 
O 4 HOH B 100 400 400 HOH HOH . 
O 4 HOH B 101 401 443 HOH HOH . 
O 4 HOH B 102 402 401 HOH HOH . 
O 4 HOH B 103 403 398 HOH HOH . 
O 4 HOH B 104 404 397 HOH HOH . 
O 4 HOH B 105 405 404 HOH HOH . 
O 4 HOH B 106 406 438 HOH HOH . 
O 4 HOH B 107 407 402 HOH HOH . 
O 4 HOH B 108 408 396 HOH HOH . 
O 4 HOH B 109 409 406 HOH HOH . 
O 4 HOH B 110 410 407 HOH HOH . 
O 4 HOH B 111 411 408 HOH HOH . 
O 4 HOH B 112 412 409 HOH HOH . 
O 4 HOH B 113 413 410 HOH HOH . 
O 4 HOH B 114 414 412 HOH HOH . 
O 4 HOH B 115 415 414 HOH HOH . 
O 4 HOH B 116 416 415 HOH HOH . 
O 4 HOH B 117 417 416 HOH HOH . 
O 4 HOH B 118 418 413 HOH HOH . 
O 4 HOH B 119 419 411 HOH HOH . 
O 4 HOH B 120 420 418 HOH HOH . 
O 4 HOH B 121 421 417 HOH HOH . 
O 4 HOH B 122 422 419 HOH HOH . 
O 4 HOH B 123 423 420 HOH HOH . 
O 4 HOH B 124 424 421 HOH HOH . 
O 4 HOH B 125 425 422 HOH HOH . 
O 4 HOH B 126 426 423 HOH HOH . 
O 4 HOH B 127 427 426 HOH HOH . 
O 4 HOH B 128 428 425 HOH HOH . 
O 4 HOH B 129 429 427 HOH HOH . 
O 4 HOH B 130 430 428 HOH HOH . 
O 4 HOH B 131 431 424 HOH HOH . 
O 4 HOH B 132 432 430 HOH HOH . 
O 4 HOH B 133 433 429 HOH HOH . 
O 4 HOH B 134 434 431 HOH HOH . 
O 4 HOH B 135 435 432 HOH HOH . 
O 4 HOH B 136 436 433 HOH HOH . 
O 4 HOH B 137 437 439 HOH HOH . 
O 4 HOH B 138 438 434 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 2 8.112 -13.548 14.536 1 20.87 ? C1 EDO 205 B 1 
HETATM 2 O O1 EDO . . . J 2 7.841 -12.755 13.361 1 19.03 ? O1 EDO 205 B 1 
HETATM 3 C C2 EDO . . . J 2 7.017 -13.373 15.586 1 22 ? C2 EDO 205 B 1 
HETATM 4 O O2 EDO . . . J 2 7.041 -12.024 16.078 1 23.1 ? O2 EDO 205 B 1 
HETATM 5 H H11 EDO . . . J 2 8.181 -14.601 14.255 1 25.04 ? H11 EDO 205 B 1 
HETATM 6 H H12 EDO . . . J 2 9.073 -13.251 14.961 1 25.04 ? H12 EDO 205 B 1 
HETATM 7 H HO1 EDO . . . J 2 8.549 -12.885 12.715 1 22.84 ? HO1 EDO 205 B 1 
HETATM 8 H H21 EDO . . . J 2 6.042 -13.589 15.144 1 26.41 ? H21 EDO 205 B 1 
HETATM 9 H H22 EDO . . . J 2 7.181 -14.071 16.411 1 26.41 ? H22 EDO 205 B 1 
HETATM 10 H HO2 EDO . . . J 2 6.349 -11.911 16.744 1 27.72 ? HO2 EDO 205 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#