data_5F62 # _model_server_result.job_id 6gjlpXJD6Qo-ZAKRtRdMrA _model_server_result.datetime_utc '2024-11-13 11:54:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5F62 # _exptl.entry_id 5F62 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F62 _cell.length_a 37.83 _cell.length_b 44.21 _cell.length_c 78.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 157 n n C1 C2 EDO sing 158 n n C1 H11 EDO sing 159 n n C1 H12 EDO sing 160 n n O1 HO1 EDO sing 161 n n C2 O2 EDO sing 162 n n C2 H21 EDO sing 163 n n C2 H22 EDO sing 164 n n O2 HO2 EDO sing 165 n n # _atom_sites.entry_id 5F62 _atom_sites.fract_transf_matrix[1][1] 0.026434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5W1 A 1 201 1 5W1 LIG . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 3 EDO A 1 204 4 EDO EDO . F 3 EDO A 1 205 6 EDO EDO . G 3 EDO A 1 206 7 EDO EDO . H 3 EDO A 1 207 8 EDO EDO . I 4 HOH A 1 301 100 HOH HOH . I 4 HOH A 2 302 71 HOH HOH . I 4 HOH A 3 303 74 HOH HOH . I 4 HOH A 4 304 138 HOH HOH . I 4 HOH A 5 305 39 HOH HOH . I 4 HOH A 6 306 117 HOH HOH . I 4 HOH A 7 307 72 HOH HOH . I 4 HOH A 8 308 144 HOH HOH . I 4 HOH A 9 309 107 HOH HOH . I 4 HOH A 10 310 75 HOH HOH . I 4 HOH A 11 311 129 HOH HOH . I 4 HOH A 12 312 85 HOH HOH . I 4 HOH A 13 313 44 HOH HOH . I 4 HOH A 14 314 106 HOH HOH . I 4 HOH A 15 315 89 HOH HOH . I 4 HOH A 16 316 126 HOH HOH . I 4 HOH A 17 317 120 HOH HOH . I 4 HOH A 18 318 118 HOH HOH . I 4 HOH A 19 319 1 HOH HOH . I 4 HOH A 20 320 23 HOH HOH . I 4 HOH A 21 321 151 HOH HOH . I 4 HOH A 22 322 139 HOH HOH . I 4 HOH A 23 323 29 HOH HOH . I 4 HOH A 24 324 87 HOH HOH . I 4 HOH A 25 325 59 HOH HOH . I 4 HOH A 26 326 8 HOH HOH . I 4 HOH A 27 327 140 HOH HOH . I 4 HOH A 28 328 6 HOH HOH . I 4 HOH A 29 329 102 HOH HOH . I 4 HOH A 30 330 67 HOH HOH . I 4 HOH A 31 331 5 HOH HOH . I 4 HOH A 32 332 22 HOH HOH . I 4 HOH A 33 333 45 HOH HOH . I 4 HOH A 34 334 81 HOH HOH . I 4 HOH A 35 335 76 HOH HOH . I 4 HOH A 36 336 18 HOH HOH . I 4 HOH A 37 337 116 HOH HOH . I 4 HOH A 38 338 36 HOH HOH . I 4 HOH A 39 339 10 HOH HOH . I 4 HOH A 40 340 99 HOH HOH . I 4 HOH A 41 341 54 HOH HOH . I 4 HOH A 42 342 20 HOH HOH . I 4 HOH A 43 343 38 HOH HOH . I 4 HOH A 44 344 90 HOH HOH . I 4 HOH A 45 345 3 HOH HOH . I 4 HOH A 46 346 113 HOH HOH . I 4 HOH A 47 347 11 HOH HOH . I 4 HOH A 48 348 152 HOH HOH . I 4 HOH A 49 349 42 HOH HOH . I 4 HOH A 50 350 27 HOH HOH . I 4 HOH A 51 351 64 HOH HOH . I 4 HOH A 52 352 57 HOH HOH . I 4 HOH A 53 353 148 HOH HOH . I 4 HOH A 54 354 51 HOH HOH . I 4 HOH A 55 355 119 HOH HOH . I 4 HOH A 56 356 30 HOH HOH . I 4 HOH A 57 357 56 HOH HOH . I 4 HOH A 58 358 79 HOH HOH . I 4 HOH A 59 359 25 HOH HOH . I 4 HOH A 60 360 58 HOH HOH . I 4 HOH A 61 361 108 HOH HOH . I 4 HOH A 62 362 9 HOH HOH . I 4 HOH A 63 363 14 HOH HOH . I 4 HOH A 64 364 63 HOH HOH . I 4 HOH A 65 365 2 HOH HOH . I 4 HOH A 66 366 142 HOH HOH . I 4 HOH A 67 367 92 HOH HOH . I 4 HOH A 68 368 109 HOH HOH . I 4 HOH A 69 369 12 HOH HOH . I 4 HOH A 70 370 112 HOH HOH . I 4 HOH A 71 371 28 HOH HOH . I 4 HOH A 72 372 37 HOH HOH . I 4 HOH A 73 373 46 HOH HOH . I 4 HOH A 74 374 145 HOH HOH . I 4 HOH A 75 375 48 HOH HOH . I 4 HOH A 76 376 7 HOH HOH . I 4 HOH A 77 377 65 HOH HOH . I 4 HOH A 78 378 62 HOH HOH . I 4 HOH A 79 379 4 HOH HOH . I 4 HOH A 80 380 77 HOH HOH . I 4 HOH A 81 381 115 HOH HOH . I 4 HOH A 82 382 82 HOH HOH . I 4 HOH A 83 383 110 HOH HOH . I 4 HOH A 84 384 123 HOH HOH . I 4 HOH A 85 385 34 HOH HOH . I 4 HOH A 86 386 136 HOH HOH . I 4 HOH A 87 387 105 HOH HOH . I 4 HOH A 88 388 32 HOH HOH . I 4 HOH A 89 389 40 HOH HOH . I 4 HOH A 90 390 26 HOH HOH . I 4 HOH A 91 391 35 HOH HOH . I 4 HOH A 92 392 70 HOH HOH . I 4 HOH A 93 393 78 HOH HOH . I 4 HOH A 94 394 47 HOH HOH . I 4 HOH A 95 395 15 HOH HOH . I 4 HOH A 96 396 141 HOH HOH . I 4 HOH A 97 397 68 HOH HOH . I 4 HOH A 98 398 33 HOH HOH . I 4 HOH A 99 399 127 HOH HOH . I 4 HOH A 100 400 55 HOH HOH . I 4 HOH A 101 401 16 HOH HOH . I 4 HOH A 102 402 21 HOH HOH . I 4 HOH A 103 403 61 HOH HOH . I 4 HOH A 104 404 80 HOH HOH . I 4 HOH A 105 405 147 HOH HOH . I 4 HOH A 106 406 13 HOH HOH . I 4 HOH A 107 407 111 HOH HOH . I 4 HOH A 108 408 97 HOH HOH . I 4 HOH A 109 409 24 HOH HOH . I 4 HOH A 110 410 43 HOH HOH . I 4 HOH A 111 411 84 HOH HOH . I 4 HOH A 112 412 95 HOH HOH . I 4 HOH A 113 413 98 HOH HOH . I 4 HOH A 114 414 114 HOH HOH . I 4 HOH A 115 415 103 HOH HOH . I 4 HOH A 116 416 73 HOH HOH . I 4 HOH A 117 417 134 HOH HOH . I 4 HOH A 118 418 125 HOH HOH . I 4 HOH A 119 419 41 HOH HOH . I 4 HOH A 120 420 101 HOH HOH . I 4 HOH A 121 421 153 HOH HOH . I 4 HOH A 122 422 83 HOH HOH . I 4 HOH A 123 423 132 HOH HOH . I 4 HOH A 124 424 135 HOH HOH . I 4 HOH A 125 425 88 HOH HOH . I 4 HOH A 126 426 19 HOH HOH . I 4 HOH A 127 427 124 HOH HOH . I 4 HOH A 128 428 86 HOH HOH . I 4 HOH A 129 429 69 HOH HOH . I 4 HOH A 130 430 52 HOH HOH . I 4 HOH A 131 431 128 HOH HOH . I 4 HOH A 132 432 49 HOH HOH . I 4 HOH A 133 433 91 HOH HOH . I 4 HOH A 134 434 150 HOH HOH . I 4 HOH A 135 435 149 HOH HOH . I 4 HOH A 136 436 154 HOH HOH . I 4 HOH A 137 437 137 HOH HOH . I 4 HOH A 138 438 31 HOH HOH . I 4 HOH A 139 439 146 HOH HOH . I 4 HOH A 140 440 17 HOH HOH . I 4 HOH A 141 441 53 HOH HOH . I 4 HOH A 142 442 60 HOH HOH . I 4 HOH A 143 443 66 HOH HOH . I 4 HOH A 144 444 96 HOH HOH . I 4 HOH A 145 445 130 HOH HOH . I 4 HOH A 146 446 104 HOH HOH . I 4 HOH A 147 447 131 HOH HOH . I 4 HOH A 148 448 122 HOH HOH . I 4 HOH A 149 449 50 HOH HOH . I 4 HOH A 150 450 133 HOH HOH . I 4 HOH A 151 451 94 HOH HOH . I 4 HOH A 152 452 121 HOH HOH . I 4 HOH A 153 453 93 HOH HOH . I 4 HOH A 154 454 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 17.316 5.531 -10.878 1 24.83 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . D 3 16.981 6.708 -10.128 1 24.94 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . D 3 18.558 4.849 -10.304 1 23.24 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . D 3 18.268 4.15 -9.086 1 21.57 ? O2 EDO 203 A 1 HETATM 5 H H11 EDO . . . D 3 17.499 5.802 -11.919 1 29.8 ? H11 EDO 203 A 1 HETATM 6 H H12 EDO . . . D 3 16.476 4.834 -10.855 1 29.8 ? H12 EDO 203 A 1 HETATM 7 H HO1 EDO . . . D 3 16.194 7.12 -10.51 1 29.93 ? HO1 EDO 203 A 1 HETATM 8 H H21 EDO . . . D 3 19.328 5.6 -10.115 1 27.89 ? H21 EDO 203 A 1 HETATM 9 H H22 EDO . . . D 3 18.955 4.145 -11.038 1 27.89 ? H22 EDO 203 A 1 HETATM 10 H HO2 EDO . . . D 3 19.074 3.733 -8.753 1 25.88 ? HO2 EDO 203 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #