data_5F63
#
_model_server_result.job_id            Evv9WLL14CDA0871-DRNow 
_model_server_result.datetime_utc      '2024-10-19 01:38:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5f63 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5F63 
#
_exptl.entry_id    5F63 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5F63 
_cell.length_a            37.89 
_cell.length_b            44.44 
_cell.length_c            78.75 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5F63 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 162 n n 
C1 C2 EDO sing 163 n n 
C1 H11 EDO sing 164 n n 
C1 H12 EDO sing 165 n n 
O1 HO1 EDO sing 166 n n 
C2 O2 EDO sing 167 n n 
C2 H21 EDO sing 168 n n 
C2 H22 EDO sing 169 n n 
O2 HO2 EDO sing 170 n n 
#
_atom_sites.entry_id                     5F63 
_atom_sites.fract_transf_matrix[1][1]    0.026392 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022502 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012698 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 5W2 A 1 201 1 5W2 LIG . 
C 3 EDO A 1 202 1 EDO EDO . 
D 3 EDO A 1 203 2 EDO EDO . 
E 4 HOH A 1 301 179 HOH HOH . 
E 4 HOH A 2 302 74 HOH HOH . 
E 4 HOH A 3 303 18 HOH HOH . 
E 4 HOH A 4 304 102 HOH HOH . 
E 4 HOH A 5 305 137 HOH HOH . 
E 4 HOH A 6 306 181 HOH HOH . 
E 4 HOH A 7 307 194 HOH HOH . 
E 4 HOH A 8 308 156 HOH HOH . 
E 4 HOH A 9 309 45 HOH HOH . 
E 4 HOH A 10 310 77 HOH HOH . 
E 4 HOH A 11 311 200 HOH HOH . 
E 4 HOH A 12 312 177 HOH HOH . 
E 4 HOH A 13 313 167 HOH HOH . 
E 4 HOH A 14 314 132 HOH HOH . 
E 4 HOH A 15 315 85 HOH HOH . 
E 4 HOH A 16 316 204 HOH HOH . 
E 4 HOH A 17 317 112 HOH HOH . 
E 4 HOH A 18 318 150 HOH HOH . 
E 4 HOH A 19 319 71 HOH HOH . 
E 4 HOH A 20 320 57 HOH HOH . 
E 4 HOH A 21 321 1 HOH HOH . 
E 4 HOH A 22 322 107 HOH HOH . 
E 4 HOH A 23 323 114 HOH HOH . 
E 4 HOH A 24 324 23 HOH HOH . 
E 4 HOH A 25 325 128 HOH HOH . 
E 4 HOH A 26 326 50 HOH HOH . 
E 4 HOH A 27 327 16 HOH HOH . 
E 4 HOH A 28 328 205 HOH HOH . 
E 4 HOH A 29 329 162 HOH HOH . 
E 4 HOH A 30 330 24 HOH HOH . 
E 4 HOH A 31 331 126 HOH HOH . 
E 4 HOH A 32 332 95 HOH HOH . 
E 4 HOH A 33 333 12 HOH HOH . 
E 4 HOH A 34 334 198 HOH HOH . 
E 4 HOH A 35 335 53 HOH HOH . 
E 4 HOH A 36 336 86 HOH HOH . 
E 4 HOH A 37 337 27 HOH HOH . 
E 4 HOH A 38 338 191 HOH HOH . 
E 4 HOH A 39 339 169 HOH HOH . 
E 4 HOH A 40 340 115 HOH HOH . 
E 4 HOH A 41 341 146 HOH HOH . 
E 4 HOH A 42 342 72 HOH HOH . 
E 4 HOH A 43 343 101 HOH HOH . 
E 4 HOH A 44 344 25 HOH HOH . 
E 4 HOH A 45 345 62 HOH HOH . 
E 4 HOH A 46 346 161 HOH HOH . 
E 4 HOH A 47 347 37 HOH HOH . 
E 4 HOH A 48 348 19 HOH HOH . 
E 4 HOH A 49 349 13 HOH HOH . 
E 4 HOH A 50 350 39 HOH HOH . 
E 4 HOH A 51 351 2 HOH HOH . 
E 4 HOH A 52 352 99 HOH HOH . 
E 4 HOH A 53 353 17 HOH HOH . 
E 4 HOH A 54 354 92 HOH HOH . 
E 4 HOH A 55 355 183 HOH HOH . 
E 4 HOH A 56 356 97 HOH HOH . 
E 4 HOH A 57 357 63 HOH HOH . 
E 4 HOH A 58 358 8 HOH HOH . 
E 4 HOH A 59 359 60 HOH HOH . 
E 4 HOH A 60 360 3 HOH HOH . 
E 4 HOH A 61 361 20 HOH HOH . 
E 4 HOH A 62 362 93 HOH HOH . 
E 4 HOH A 63 363 9 HOH HOH . 
E 4 HOH A 64 364 94 HOH HOH . 
E 4 HOH A 65 365 40 HOH HOH . 
E 4 HOH A 66 366 10 HOH HOH . 
E 4 HOH A 67 367 196 HOH HOH . 
E 4 HOH A 68 368 80 HOH HOH . 
E 4 HOH A 69 369 143 HOH HOH . 
E 4 HOH A 70 370 31 HOH HOH . 
E 4 HOH A 71 371 121 HOH HOH . 
E 4 HOH A 72 372 81 HOH HOH . 
E 4 HOH A 73 373 87 HOH HOH . 
E 4 HOH A 74 374 149 HOH HOH . 
E 4 HOH A 75 375 38 HOH HOH . 
E 4 HOH A 76 376 36 HOH HOH . 
E 4 HOH A 77 377 120 HOH HOH . 
E 4 HOH A 78 378 184 HOH HOH . 
E 4 HOH A 79 379 91 HOH HOH . 
E 4 HOH A 80 380 163 HOH HOH . 
E 4 HOH A 81 381 28 HOH HOH . 
E 4 HOH A 82 382 33 HOH HOH . 
E 4 HOH A 83 383 11 HOH HOH . 
E 4 HOH A 84 384 118 HOH HOH . 
E 4 HOH A 85 385 104 HOH HOH . 
E 4 HOH A 86 386 15 HOH HOH . 
E 4 HOH A 87 387 170 HOH HOH . 
E 4 HOH A 88 388 175 HOH HOH . 
E 4 HOH A 89 389 152 HOH HOH . 
E 4 HOH A 90 390 70 HOH HOH . 
E 4 HOH A 91 391 54 HOH HOH . 
E 4 HOH A 92 392 201 HOH HOH . 
E 4 HOH A 93 393 67 HOH HOH . 
E 4 HOH A 94 394 56 HOH HOH . 
E 4 HOH A 95 395 48 HOH HOH . 
E 4 HOH A 96 396 108 HOH HOH . 
E 4 HOH A 97 397 64 HOH HOH . 
E 4 HOH A 98 398 135 HOH HOH . 
E 4 HOH A 99 399 78 HOH HOH . 
E 4 HOH A 100 400 61 HOH HOH . 
E 4 HOH A 101 401 47 HOH HOH . 
E 4 HOH A 102 402 29 HOH HOH . 
E 4 HOH A 103 403 195 HOH HOH . 
E 4 HOH A 104 404 66 HOH HOH . 
E 4 HOH A 105 405 68 HOH HOH . 
E 4 HOH A 106 406 165 HOH HOH . 
E 4 HOH A 107 407 49 HOH HOH . 
E 4 HOH A 108 408 7 HOH HOH . 
E 4 HOH A 109 409 4 HOH HOH . 
E 4 HOH A 110 410 178 HOH HOH . 
E 4 HOH A 111 411 98 HOH HOH . 
E 4 HOH A 112 412 21 HOH HOH . 
E 4 HOH A 113 413 83 HOH HOH . 
E 4 HOH A 114 414 138 HOH HOH . 
E 4 HOH A 115 415 133 HOH HOH . 
E 4 HOH A 116 416 134 HOH HOH . 
E 4 HOH A 117 417 144 HOH HOH . 
E 4 HOH A 118 418 55 HOH HOH . 
E 4 HOH A 119 419 43 HOH HOH . 
E 4 HOH A 120 420 100 HOH HOH . 
E 4 HOH A 121 421 58 HOH HOH . 
E 4 HOH A 122 422 73 HOH HOH . 
E 4 HOH A 123 423 32 HOH HOH . 
E 4 HOH A 124 424 65 HOH HOH . 
E 4 HOH A 125 425 171 HOH HOH . 
E 4 HOH A 126 426 131 HOH HOH . 
E 4 HOH A 127 427 59 HOH HOH . 
E 4 HOH A 128 428 5 HOH HOH . 
E 4 HOH A 129 429 185 HOH HOH . 
E 4 HOH A 130 430 123 HOH HOH . 
E 4 HOH A 131 431 52 HOH HOH . 
E 4 HOH A 132 432 6 HOH HOH . 
E 4 HOH A 133 433 34 HOH HOH . 
E 4 HOH A 134 434 69 HOH HOH . 
E 4 HOH A 135 435 51 HOH HOH . 
E 4 HOH A 136 436 35 HOH HOH . 
E 4 HOH A 137 437 142 HOH HOH . 
E 4 HOH A 138 438 103 HOH HOH . 
E 4 HOH A 139 439 180 HOH HOH . 
E 4 HOH A 140 440 182 HOH HOH . 
E 4 HOH A 141 441 174 HOH HOH . 
E 4 HOH A 142 442 90 HOH HOH . 
E 4 HOH A 143 443 89 HOH HOH . 
E 4 HOH A 144 444 116 HOH HOH . 
E 4 HOH A 145 445 88 HOH HOH . 
E 4 HOH A 146 446 136 HOH HOH . 
E 4 HOH A 147 447 186 HOH HOH . 
E 4 HOH A 148 448 140 HOH HOH . 
E 4 HOH A 149 449 155 HOH HOH . 
E 4 HOH A 150 450 176 HOH HOH . 
E 4 HOH A 151 451 22 HOH HOH . 
E 4 HOH A 152 452 168 HOH HOH . 
E 4 HOH A 153 453 188 HOH HOH . 
E 4 HOH A 154 454 154 HOH HOH . 
E 4 HOH A 155 455 159 HOH HOH . 
E 4 HOH A 156 456 141 HOH HOH . 
E 4 HOH A 157 457 164 HOH HOH . 
E 4 HOH A 158 458 189 HOH HOH . 
E 4 HOH A 159 459 147 HOH HOH . 
E 4 HOH A 160 460 192 HOH HOH . 
E 4 HOH A 161 461 206 HOH HOH . 
E 4 HOH A 162 462 105 HOH HOH . 
E 4 HOH A 163 463 46 HOH HOH . 
E 4 HOH A 164 464 199 HOH HOH . 
E 4 HOH A 165 465 151 HOH HOH . 
E 4 HOH A 166 466 76 HOH HOH . 
E 4 HOH A 167 467 119 HOH HOH . 
E 4 HOH A 168 468 145 HOH HOH . 
E 4 HOH A 169 469 203 HOH HOH . 
E 4 HOH A 170 470 42 HOH HOH . 
E 4 HOH A 171 471 127 HOH HOH . 
E 4 HOH A 172 472 124 HOH HOH . 
E 4 HOH A 173 473 84 HOH HOH . 
E 4 HOH A 174 474 197 HOH HOH . 
E 4 HOH A 175 475 173 HOH HOH . 
E 4 HOH A 176 476 75 HOH HOH . 
E 4 HOH A 177 477 158 HOH HOH . 
E 4 HOH A 178 478 30 HOH HOH . 
E 4 HOH A 179 479 82 HOH HOH . 
E 4 HOH A 180 480 148 HOH HOH . 
E 4 HOH A 181 481 14 HOH HOH . 
E 4 HOH A 182 482 129 HOH HOH . 
E 4 HOH A 183 483 79 HOH HOH . 
E 4 HOH A 184 484 187 HOH HOH . 
E 4 HOH A 185 485 106 HOH HOH . 
E 4 HOH A 186 486 41 HOH HOH . 
E 4 HOH A 187 487 44 HOH HOH . 
E 4 HOH A 188 488 166 HOH HOH . 
E 4 HOH A 189 489 190 HOH HOH . 
E 4 HOH A 190 490 109 HOH HOH . 
E 4 HOH A 191 491 202 HOH HOH . 
E 4 HOH A 192 492 160 HOH HOH . 
E 4 HOH A 193 493 26 HOH HOH . 
E 4 HOH A 194 494 111 HOH HOH . 
E 4 HOH A 195 495 172 HOH HOH . 
E 4 HOH A 196 496 117 HOH HOH . 
E 4 HOH A 197 497 125 HOH HOH . 
E 4 HOH A 198 498 122 HOH HOH . 
E 4 HOH A 199 499 157 HOH HOH . 
E 4 HOH A 200 500 153 HOH HOH . 
E 4 HOH A 201 501 130 HOH HOH . 
E 4 HOH A 202 502 139 HOH HOH . 
E 4 HOH A 203 503 96 HOH HOH . 
E 4 HOH A 204 504 193 HOH HOH . 
E 4 HOH A 205 505 113 HOH HOH . 
E 4 HOH A 206 506 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 6.319 20.328 2.434 1 41.24 ? C1 EDO 203 A 1 
HETATM 2 O O1 EDO . . . D 3 5.375 19.651 3.191 1 40.79 ? O1 EDO 203 A 1 
HETATM 3 C C2 EDO . . . D 3 6.294 19.764 1.075 1 41.02 ? C2 EDO 203 A 1 
HETATM 4 O O2 EDO . . . D 3 6.179 18.446 1.255 1 41.32 ? O2 EDO 203 A 1 
HETATM 5 H H11 EDO . . . D 3 7.309 20.2 2.87 1 49.49 ? H11 EDO 203 A 1 
HETATM 6 H H12 EDO . . . D 3 6.1 21.392 2.425 1 49.49 ? H12 EDO 203 A 1 
HETATM 7 H HO1 EDO . . . D 3 5.25 20.119 4.016 1 48.94 ? HO1 EDO 203 A 1 
HETATM 8 H H21 EDO . . . D 3 5.447 20.104 0.506 1 49.22 ? H21 EDO 203 A 1 
HETATM 9 H H22 EDO . . . D 3 7.198 19.987 0.526 1 49.22 ? H22 EDO 203 A 1 
HETATM 10 H HO2 EDO . . . D 3 6.157 18.032 0.382 1 49.59 ? HO2 EDO 203 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#