data_5F6U # _model_server_result.job_id l_Kg5JK3WDwkwe0BWjQnTQ _model_server_result.datetime_utc '2024-11-29 01:43:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f6u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5F6U # _exptl.entry_id 5F6U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.322 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl 3-[4-(2-hydroxyphenyl)-3-oxidanyl-phenyl]propanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.79 _cell.angle_gamma 90 _cell.entry_id 5F6U _cell.length_a 50.696 _cell.length_b 35.675 _cell.length_c 58.077 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F6U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H18 O4' _chem_comp.formula_weight 286.322 _chem_comp.id 5VK _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl 3-[4-(2-hydroxyphenyl)-3-oxidanyl-phenyl]propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAL 5VK sing 1 n n CAL OAO 5VK sing 2 n n CAG CAE 5VK doub 3 n y CAG CAR 5VK sing 4 n y OAO CAP 5VK sing 5 n n CAE CAF 5VK sing 6 n y OAC CAR 5VK sing 7 n n CAR CAT 5VK doub 8 n y OAB CAP 5VK doub 9 n n CAF CAH 5VK doub 10 n y CAP CAM 5VK sing 11 n n CAT CAH 5VK sing 12 n y CAT CAU 5VK sing 13 n n CAU CAJ 5VK doub 14 n y CAU CAS 5VK sing 15 n y CAJ CAI 5VK sing 16 n y OAD CAS 5VK sing 17 n n CAS CAK 5VK doub 18 n y CAI CAQ 5VK doub 19 n y CAM CAN 5VK sing 20 n n CAK CAQ 5VK sing 21 n y CAQ CAN 5VK sing 22 n n CAA H1 5VK sing 23 n n CAA H2 5VK sing 24 n n CAA H3 5VK sing 25 n n CAL H4 5VK sing 26 n n CAL H5 5VK sing 27 n n CAM H6 5VK sing 28 n n CAM H7 5VK sing 29 n n CAN H8 5VK sing 30 n n CAN H9 5VK sing 31 n n CAK H10 5VK sing 32 n n OAD H11 5VK sing 33 n n CAI H12 5VK sing 34 n n CAJ H13 5VK sing 35 n n CAH H14 5VK sing 36 n n CAF H15 5VK sing 37 n n CAE H16 5VK sing 38 n n CAG H17 5VK sing 39 n n OAC H18 5VK sing 40 n n # _atom_sites.entry_id 5F6U _atom_sites.fract_transf_matrix[1][1] 0.019725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007885 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5VK A 1 201 1 5VK DRG . C 3 HOH A 1 301 204 HOH HOH . C 3 HOH A 2 302 43 HOH HOH . C 3 HOH A 3 303 238 HOH HOH . C 3 HOH A 4 304 137 HOH HOH . C 3 HOH A 5 305 156 HOH HOH . C 3 HOH A 6 306 65 HOH HOH . C 3 HOH A 7 307 74 HOH HOH . C 3 HOH A 8 308 30 HOH HOH . C 3 HOH A 9 309 22 HOH HOH . C 3 HOH A 10 310 29 HOH HOH . C 3 HOH A 11 311 92 HOH HOH . C 3 HOH A 12 312 9 HOH HOH . C 3 HOH A 13 313 187 HOH HOH . C 3 HOH A 14 314 278 HOH HOH . C 3 HOH A 15 315 132 HOH HOH . C 3 HOH A 16 316 207 HOH HOH . C 3 HOH A 17 317 251 HOH HOH . C 3 HOH A 18 318 52 HOH HOH . C 3 HOH A 19 319 14 HOH HOH . C 3 HOH A 20 320 7 HOH HOH . C 3 HOH A 21 321 130 HOH HOH . C 3 HOH A 22 322 158 HOH HOH . C 3 HOH A 23 323 88 HOH HOH . C 3 HOH A 24 324 46 HOH HOH . C 3 HOH A 25 325 57 HOH HOH . C 3 HOH A 26 326 20 HOH HOH . C 3 HOH A 27 327 3 HOH HOH . C 3 HOH A 28 328 262 HOH HOH . C 3 HOH A 29 329 15 HOH HOH . C 3 HOH A 30 330 2 HOH HOH . C 3 HOH A 31 331 131 HOH HOH . C 3 HOH A 32 332 54 HOH HOH . C 3 HOH A 33 333 1 HOH HOH . C 3 HOH A 34 334 39 HOH HOH . C 3 HOH A 35 335 33 HOH HOH . C 3 HOH A 36 336 28 HOH HOH . C 3 HOH A 37 337 134 HOH HOH . C 3 HOH A 38 338 103 HOH HOH . C 3 HOH A 39 339 110 HOH HOH . C 3 HOH A 40 340 91 HOH HOH . C 3 HOH A 41 341 161 HOH HOH . C 3 HOH A 42 342 136 HOH HOH . C 3 HOH A 43 343 4 HOH HOH . C 3 HOH A 44 344 69 HOH HOH . C 3 HOH A 45 345 31 HOH HOH . C 3 HOH A 46 346 125 HOH HOH . C 3 HOH A 47 347 61 HOH HOH . C 3 HOH A 48 348 23 HOH HOH . C 3 HOH A 49 349 154 HOH HOH . C 3 HOH A 50 350 64 HOH HOH . C 3 HOH A 51 351 215 HOH HOH . C 3 HOH A 52 352 37 HOH HOH . C 3 HOH A 53 353 17 HOH HOH . C 3 HOH A 54 354 41 HOH HOH . C 3 HOH A 55 355 80 HOH HOH . C 3 HOH A 56 356 26 HOH HOH . C 3 HOH A 57 357 67 HOH HOH . C 3 HOH A 58 358 59 HOH HOH . C 3 HOH A 59 359 195 HOH HOH . C 3 HOH A 60 360 6 HOH HOH . C 3 HOH A 61 361 25 HOH HOH . C 3 HOH A 62 362 34 HOH HOH . C 3 HOH A 63 363 98 HOH HOH . C 3 HOH A 64 364 121 HOH HOH . C 3 HOH A 65 365 189 HOH HOH . C 3 HOH A 66 366 63 HOH HOH . C 3 HOH A 67 367 218 HOH HOH . C 3 HOH A 68 368 73 HOH HOH . C 3 HOH A 69 369 35 HOH HOH . C 3 HOH A 70 370 36 HOH HOH . C 3 HOH A 71 371 144 HOH HOH . C 3 HOH A 72 372 124 HOH HOH . C 3 HOH A 73 373 68 HOH HOH . C 3 HOH A 74 374 19 HOH HOH . C 3 HOH A 75 375 8 HOH HOH . C 3 HOH A 76 376 13 HOH HOH . C 3 HOH A 77 377 142 HOH HOH . C 3 HOH A 78 378 70 HOH HOH . C 3 HOH A 79 379 205 HOH HOH . C 3 HOH A 80 380 133 HOH HOH . C 3 HOH A 81 381 81 HOH HOH . C 3 HOH A 82 382 5 HOH HOH . C 3 HOH A 83 383 71 HOH HOH . C 3 HOH A 84 384 62 HOH HOH . C 3 HOH A 85 385 248 HOH HOH . C 3 HOH A 86 386 118 HOH HOH . C 3 HOH A 87 387 40 HOH HOH . C 3 HOH A 88 388 178 HOH HOH . C 3 HOH A 89 389 90 HOH HOH . C 3 HOH A 90 390 249 HOH HOH . C 3 HOH A 91 391 115 HOH HOH . C 3 HOH A 92 392 16 HOH HOH . C 3 HOH A 93 393 42 HOH HOH . C 3 HOH A 94 394 111 HOH HOH . C 3 HOH A 95 395 12 HOH HOH . C 3 HOH A 96 396 287 HOH HOH . C 3 HOH A 97 397 203 HOH HOH . C 3 HOH A 98 398 86 HOH HOH . C 3 HOH A 99 399 102 HOH HOH . C 3 HOH A 100 400 117 HOH HOH . C 3 HOH A 101 401 27 HOH HOH . C 3 HOH A 102 402 147 HOH HOH . C 3 HOH A 103 403 219 HOH HOH . C 3 HOH A 104 404 38 HOH HOH . C 3 HOH A 105 405 76 HOH HOH . C 3 HOH A 106 406 47 HOH HOH . C 3 HOH A 107 407 77 HOH HOH . C 3 HOH A 108 408 18 HOH HOH . C 3 HOH A 109 409 254 HOH HOH . C 3 HOH A 110 410 24 HOH HOH . C 3 HOH A 111 411 217 HOH HOH . C 3 HOH A 112 412 84 HOH HOH . C 3 HOH A 113 413 75 HOH HOH . C 3 HOH A 114 414 247 HOH HOH . C 3 HOH A 115 415 45 HOH HOH . C 3 HOH A 116 416 107 HOH HOH . C 3 HOH A 117 417 21 HOH HOH . C 3 HOH A 118 418 10 HOH HOH . C 3 HOH A 119 419 82 HOH HOH . C 3 HOH A 120 420 211 HOH HOH . C 3 HOH A 121 421 250 HOH HOH . C 3 HOH A 122 422 180 HOH HOH . C 3 HOH A 123 423 11 HOH HOH . C 3 HOH A 124 424 213 HOH HOH . C 3 HOH A 125 425 120 HOH HOH . C 3 HOH A 126 426 232 HOH HOH . C 3 HOH A 127 427 96 HOH HOH . C 3 HOH A 128 428 114 HOH HOH . C 3 HOH A 129 429 141 HOH HOH . C 3 HOH A 130 430 97 HOH HOH . C 3 HOH A 131 431 159 HOH HOH . C 3 HOH A 132 432 78 HOH HOH . C 3 HOH A 133 433 128 HOH HOH . C 3 HOH A 134 434 190 HOH HOH . C 3 HOH A 135 435 55 HOH HOH . C 3 HOH A 136 436 221 HOH HOH . C 3 HOH A 137 437 186 HOH HOH . C 3 HOH A 138 438 216 HOH HOH . C 3 HOH A 139 439 242 HOH HOH . C 3 HOH A 140 440 143 HOH HOH . C 3 HOH A 141 441 191 HOH HOH . C 3 HOH A 142 442 56 HOH HOH . C 3 HOH A 143 443 181 HOH HOH . C 3 HOH A 144 444 113 HOH HOH . C 3 HOH A 145 445 53 HOH HOH . C 3 HOH A 146 446 227 HOH HOH . C 3 HOH A 147 447 210 HOH HOH . C 3 HOH A 148 448 60 HOH HOH . C 3 HOH A 149 449 272 HOH HOH . C 3 HOH A 150 450 206 HOH HOH . C 3 HOH A 151 451 264 HOH HOH . C 3 HOH A 152 452 119 HOH HOH . C 3 HOH A 153 453 246 HOH HOH . C 3 HOH A 154 454 270 HOH HOH . C 3 HOH A 155 455 202 HOH HOH . C 3 HOH A 156 456 271 HOH HOH . C 3 HOH A 157 457 176 HOH HOH . C 3 HOH A 158 458 83 HOH HOH . C 3 HOH A 159 459 72 HOH HOH . C 3 HOH A 160 460 79 HOH HOH . C 3 HOH A 161 461 127 HOH HOH . C 3 HOH A 162 462 208 HOH HOH . C 3 HOH A 163 463 50 HOH HOH . C 3 HOH A 164 464 32 HOH HOH . C 3 HOH A 165 465 173 HOH HOH . C 3 HOH A 166 466 51 HOH HOH . C 3 HOH A 167 467 166 HOH HOH . C 3 HOH A 168 468 273 HOH HOH . C 3 HOH A 169 469 146 HOH HOH . C 3 HOH A 170 470 87 HOH HOH . C 3 HOH A 171 471 185 HOH HOH . C 3 HOH A 172 472 182 HOH HOH . C 3 HOH A 173 473 171 HOH HOH . C 3 HOH A 174 474 48 HOH HOH . C 3 HOH A 175 475 167 HOH HOH . C 3 HOH A 176 476 256 HOH HOH . C 3 HOH A 177 477 168 HOH HOH . C 3 HOH A 178 478 116 HOH HOH . C 3 HOH A 179 479 157 HOH HOH . C 3 HOH A 180 480 209 HOH HOH . C 3 HOH A 181 481 150 HOH HOH . C 3 HOH A 182 482 172 HOH HOH . C 3 HOH A 183 483 239 HOH HOH . C 3 HOH A 184 484 99 HOH HOH . C 3 HOH A 185 485 126 HOH HOH . C 3 HOH A 186 486 197 HOH HOH . C 3 HOH A 187 487 162 HOH HOH . C 3 HOH A 188 488 222 HOH HOH . C 3 HOH A 189 489 223 HOH HOH . C 3 HOH A 190 490 235 HOH HOH . C 3 HOH A 191 491 148 HOH HOH . C 3 HOH A 192 492 153 HOH HOH . C 3 HOH A 193 493 94 HOH HOH . C 3 HOH A 194 494 263 HOH HOH . C 3 HOH A 195 495 152 HOH HOH . C 3 HOH A 196 496 138 HOH HOH . C 3 HOH A 197 497 169 HOH HOH . C 3 HOH A 198 498 220 HOH HOH . C 3 HOH A 199 499 200 HOH HOH . C 3 HOH A 200 500 44 HOH HOH . C 3 HOH A 201 501 106 HOH HOH . C 3 HOH A 202 502 160 HOH HOH . C 3 HOH A 203 503 95 HOH HOH . C 3 HOH A 204 504 135 HOH HOH . C 3 HOH A 205 505 269 HOH HOH . C 3 HOH A 206 506 49 HOH HOH . C 3 HOH A 207 507 255 HOH HOH . C 3 HOH A 208 508 252 HOH HOH . C 3 HOH A 209 509 175 HOH HOH . C 3 HOH A 210 510 85 HOH HOH . C 3 HOH A 211 511 105 HOH HOH . C 3 HOH A 212 512 123 HOH HOH . C 3 HOH A 213 513 129 HOH HOH . C 3 HOH A 214 514 259 HOH HOH . C 3 HOH A 215 515 236 HOH HOH . C 3 HOH A 216 516 58 HOH HOH . C 3 HOH A 217 517 234 HOH HOH . C 3 HOH A 218 518 279 HOH HOH . C 3 HOH A 219 519 104 HOH HOH . C 3 HOH A 220 520 179 HOH HOH . C 3 HOH A 221 521 140 HOH HOH . C 3 HOH A 222 522 109 HOH HOH . C 3 HOH A 223 523 66 HOH HOH . C 3 HOH A 224 524 112 HOH HOH . C 3 HOH A 225 525 100 HOH HOH . C 3 HOH A 226 526 177 HOH HOH . C 3 HOH A 227 527 151 HOH HOH . C 3 HOH A 228 528 285 HOH HOH . C 3 HOH A 229 529 260 HOH HOH . C 3 HOH A 230 530 174 HOH HOH . C 3 HOH A 231 531 212 HOH HOH . C 3 HOH A 232 532 89 HOH HOH . C 3 HOH A 233 533 164 HOH HOH . C 3 HOH A 234 534 145 HOH HOH . C 3 HOH A 235 535 277 HOH HOH . C 3 HOH A 236 536 265 HOH HOH . C 3 HOH A 237 537 122 HOH HOH . C 3 HOH A 238 538 258 HOH HOH . C 3 HOH A 239 539 266 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 5VK . . . B 2 -12.095 11 -25.889 1 30.16 ? CAA 5VK 201 A 1 HETATM 2 C CAL 5VK . . . B 2 -13.596 11.007 -25.871 1 35.28 ? CAL 5VK 201 A 1 HETATM 3 O OAO 5VK . . . B 2 -14.039 11.467 -24.58 1 49.84 ? OAO 5VK 201 A 1 HETATM 4 C CAP 5VK . . . B 2 -14.173 10.468 -23.599 1 30.71 ? CAP 5VK 201 A 1 HETATM 5 O OAB 5VK . . . B 2 -13.923 9.312 -23.859 1 42.94 ? OAB 5VK 201 A 1 HETATM 6 C CAM 5VK . . . B 2 -14.293 10.912 -22.095 1 32.3 ? CAM 5VK 201 A 1 HETATM 7 C CAN 5VK . . . B 2 -12.957 10.74 -21.373 1 31.41 ? CAN 5VK 201 A 1 HETATM 8 C CAQ 5VK . . . B 2 -11.81 11.666 -21.968 1 21.7 ? CAQ 5VK 201 A 1 HETATM 9 C CAK 5VK . . . B 2 -11.977 13.033 -22.026 1 25.32 ? CAK 5VK 201 A 1 HETATM 10 C CAS 5VK . . . B 2 -10.953 13.857 -22.548 1 20.82 ? CAS 5VK 201 A 1 HETATM 11 O OAD 5VK . . . B 2 -11.154 15.256 -22.596 1 27.74 ? OAD 5VK 201 A 1 HETATM 12 C CAI 5VK . . . B 2 -10.61 11.093 -22.446 1 23.9 ? CAI 5VK 201 A 1 HETATM 13 C CAJ 5VK . . . B 2 -9.62 11.889 -22.96 1 19.34 ? CAJ 5VK 201 A 1 HETATM 14 C CAU 5VK . . . B 2 -9.774 13.286 -23.034 1 21.48 ? CAU 5VK 201 A 1 HETATM 15 C CAT 5VK . . . B 2 -8.615 14.072 -23.577 1 22.58 ? CAT 5VK 201 A 1 HETATM 16 C CAH 5VK . . . B 2 -7.393 13.507 -23.388 1 19.81 ? CAH 5VK 201 A 1 HETATM 17 C CAF 5VK . . . B 2 -6.226 14.162 -23.842 1 19.02 ? CAF 5VK 201 A 1 HETATM 18 C CAE 5VK . . . B 2 -6.3 15.393 -24.475 1 21.12 ? CAE 5VK 201 A 1 HETATM 19 C CAG 5VK . . . B 2 -7.509 15.967 -24.667 1 24.39 ? CAG 5VK 201 A 1 HETATM 20 C CAR 5VK . . . B 2 -8.686 15.318 -24.217 1 23.14 ? CAR 5VK 201 A 1 HETATM 21 O OAC 5VK . . . B 2 -9.905 15.973 -24.443 1 24.2 ? OAC 5VK 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 21 #