data_5F7G # _model_server_result.job_id XwJKFmqW_PK55HSiAKJ39Q _model_server_result.datetime_utc '2025-01-25 08:32:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f7g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5F7G # _exptl.entry_id 5F7G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.87 _cell.angle_beta 91.33 _cell.angle_gamma 114.36 _cell.entry_id 5F7G _cell.length_a 29.97 _cell.length_b 35.722 _cell.length_c 64.455 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F7G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 108 A LYS 108 1_555 C C15 RET . A RET 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? covale ? covale2 B NZ LYS 108 B LYS 108 1_555 E C15 RET . B RET 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.26 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 266 n n C1 C6 RET sing 267 n n C1 C16 RET sing 268 n n C1 C17 RET sing 269 n n C2 C3 RET sing 270 n n C2 H21 RET sing 271 n n C2 H22 RET sing 272 n n C3 C4 RET sing 273 n n C3 H31 RET sing 274 n n C3 H32 RET sing 275 n n C4 C5 RET sing 276 n n C4 H41 RET sing 277 n n C4 H42 RET sing 278 n n C5 C6 RET doub 279 n n C5 C18 RET sing 280 n n C6 C7 RET sing 281 n n C7 C8 RET doub 282 e n C7 H7 RET sing 283 n n C8 C9 RET sing 284 n n C8 H8 RET sing 285 n n C9 C10 RET doub 286 e n C9 C19 RET sing 287 n n C10 C11 RET sing 288 n n C10 H10 RET sing 289 n n C11 C12 RET doub 290 e n C11 H11 RET sing 291 n n C12 C13 RET sing 292 n n C12 H12 RET sing 293 n n C13 C14 RET doub 294 e n C13 C20 RET sing 295 n n C14 C15 RET sing 296 n n C14 H14 RET sing 297 n n C15 O1 RET doub 298 n n C15 H15 RET sing 299 n n C16 H161 RET sing 300 n n C16 H162 RET sing 301 n n C16 H163 RET sing 302 n n C17 H171 RET sing 303 n n C17 H172 RET sing 304 n n C17 H173 RET sing 305 n n C18 H181 RET sing 306 n n C18 H182 RET sing 307 n n C18 H183 RET sing 308 n n C19 H191 RET sing 309 n n C19 H192 RET sing 310 n n C19 H193 RET sing 311 n n C20 H201 RET sing 312 n n C20 H202 RET sing 313 n n C20 H203 RET sing 314 n n # _atom_sites.entry_id 5F7G _atom_sites.fract_transf_matrix[1][1] 0.033367 _atom_sites.fract_transf_matrix[1][2] 0.015108 _atom_sites.fract_transf_matrix[1][3] 0.001183 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03073 _atom_sites.fract_transf_matrix[2][3] 0.000833 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 201 1 RET RET . D 3 ACT A 1 202 1 ACT ACT . E 2 RET B 1 201 1 RET RET . F 3 ACT B 1 202 1 ACT ACT . G 3 ACT B 1 203 1 ACT ACT . H 4 HOH A 1 301 152 HOH HOH . H 4 HOH A 2 302 195 HOH HOH . H 4 HOH A 3 303 218 HOH HOH . H 4 HOH A 4 304 66 HOH HOH . H 4 HOH A 5 305 105 HOH HOH . H 4 HOH A 6 306 209 HOH HOH . H 4 HOH A 7 307 70 HOH HOH . H 4 HOH A 8 308 52 HOH HOH . H 4 HOH A 9 309 122 HOH HOH . H 4 HOH A 10 310 176 HOH HOH . H 4 HOH A 11 311 42 HOH HOH . H 4 HOH A 12 312 78 HOH HOH . H 4 HOH A 13 313 121 HOH HOH . H 4 HOH A 14 314 77 HOH HOH . H 4 HOH A 15 315 75 HOH HOH . H 4 HOH A 16 316 172 HOH HOH . H 4 HOH A 17 317 39 HOH HOH . H 4 HOH A 18 318 47 HOH HOH . H 4 HOH A 19 319 129 HOH HOH . H 4 HOH A 20 320 208 HOH HOH . H 4 HOH A 21 321 147 HOH HOH . H 4 HOH A 22 322 28 HOH HOH . H 4 HOH A 23 323 212 HOH HOH . H 4 HOH A 24 324 65 HOH HOH . H 4 HOH A 25 325 111 HOH HOH . H 4 HOH A 26 326 137 HOH HOH . H 4 HOH A 27 327 5 HOH HOH . H 4 HOH A 28 328 25 HOH HOH . H 4 HOH A 29 329 138 HOH HOH . H 4 HOH A 30 330 132 HOH HOH . H 4 HOH A 31 331 81 HOH HOH . H 4 HOH A 32 332 205 HOH HOH . H 4 HOH A 33 333 89 HOH HOH . H 4 HOH A 34 334 136 HOH HOH . H 4 HOH A 35 335 128 HOH HOH . H 4 HOH A 36 336 86 HOH HOH . H 4 HOH A 37 337 127 HOH HOH . H 4 HOH A 38 338 7 HOH HOH . H 4 HOH A 39 339 14 HOH HOH . H 4 HOH A 40 340 103 HOH HOH . H 4 HOH A 41 341 173 HOH HOH . H 4 HOH A 42 342 155 HOH HOH . H 4 HOH A 43 343 27 HOH HOH . H 4 HOH A 44 344 18 HOH HOH . H 4 HOH A 45 345 153 HOH HOH . H 4 HOH A 46 346 145 HOH HOH . H 4 HOH A 47 347 61 HOH HOH . H 4 HOH A 48 348 102 HOH HOH . H 4 HOH A 49 349 112 HOH HOH . H 4 HOH A 50 350 96 HOH HOH . H 4 HOH A 51 351 174 HOH HOH . H 4 HOH A 52 352 180 HOH HOH . H 4 HOH A 53 353 57 HOH HOH . H 4 HOH A 54 354 149 HOH HOH . H 4 HOH A 55 355 58 HOH HOH . H 4 HOH A 56 356 123 HOH HOH . H 4 HOH A 57 357 124 HOH HOH . H 4 HOH A 58 358 210 HOH HOH . H 4 HOH A 59 359 68 HOH HOH . H 4 HOH A 60 360 211 HOH HOH . H 4 HOH A 61 361 206 HOH HOH . H 4 HOH A 62 362 216 HOH HOH . H 4 HOH A 63 363 80 HOH HOH . H 4 HOH A 64 364 22 HOH HOH . H 4 HOH A 65 365 207 HOH HOH . H 4 HOH A 66 366 30 HOH HOH . H 4 HOH A 67 367 29 HOH HOH . H 4 HOH A 68 368 214 HOH HOH . H 4 HOH A 69 369 10 HOH HOH . H 4 HOH A 70 370 11 HOH HOH . H 4 HOH A 71 371 37 HOH HOH . H 4 HOH A 72 372 8 HOH HOH . H 4 HOH A 73 373 101 HOH HOH . H 4 HOH A 74 374 94 HOH HOH . H 4 HOH A 75 375 125 HOH HOH . H 4 HOH A 76 376 200 HOH HOH . H 4 HOH A 77 377 117 HOH HOH . H 4 HOH A 78 378 50 HOH HOH . H 4 HOH A 79 379 183 HOH HOH . H 4 HOH A 80 380 146 HOH HOH . H 4 HOH A 81 381 51 HOH HOH . H 4 HOH A 82 382 217 HOH HOH . H 4 HOH A 83 383 142 HOH HOH . H 4 HOH A 84 384 9 HOH HOH . H 4 HOH A 85 385 63 HOH HOH . H 4 HOH A 86 386 48 HOH HOH . H 4 HOH A 87 387 43 HOH HOH . H 4 HOH A 88 388 184 HOH HOH . H 4 HOH A 89 389 164 HOH HOH . H 4 HOH A 90 390 16 HOH HOH . H 4 HOH A 91 391 6 HOH HOH . H 4 HOH A 92 392 190 HOH HOH . H 4 HOH A 93 393 179 HOH HOH . H 4 HOH A 94 394 166 HOH HOH . H 4 HOH A 95 395 131 HOH HOH . H 4 HOH A 96 396 119 HOH HOH . H 4 HOH A 97 397 24 HOH HOH . H 4 HOH A 98 398 60 HOH HOH . H 4 HOH A 99 399 162 HOH HOH . H 4 HOH A 100 400 54 HOH HOH . H 4 HOH A 101 401 163 HOH HOH . H 4 HOH A 102 402 171 HOH HOH . H 4 HOH A 103 403 196 HOH HOH . H 4 HOH A 104 404 161 HOH HOH . H 4 HOH A 105 405 194 HOH HOH . H 4 HOH A 106 406 175 HOH HOH . H 4 HOH A 107 407 177 HOH HOH . H 4 HOH A 108 408 154 HOH HOH . H 4 HOH A 109 409 160 HOH HOH . H 4 HOH A 110 410 199 HOH HOH . H 4 HOH A 111 411 133 HOH HOH . H 4 HOH A 112 412 67 HOH HOH . H 4 HOH A 113 413 201 HOH HOH . H 4 HOH A 114 414 76 HOH HOH . H 4 HOH A 115 415 193 HOH HOH . H 4 HOH A 116 416 192 HOH HOH . H 4 HOH A 117 417 74 HOH HOH . H 4 HOH A 118 418 181 HOH HOH . H 4 HOH A 119 419 188 HOH HOH . H 4 HOH A 120 420 100 HOH HOH . H 4 HOH A 121 421 197 HOH HOH . I 4 HOH B 1 301 143 HOH HOH . I 4 HOH B 2 302 168 HOH HOH . I 4 HOH B 3 303 115 HOH HOH . I 4 HOH B 4 304 140 HOH HOH . I 4 HOH B 5 305 87 HOH HOH . I 4 HOH B 6 306 219 HOH HOH . I 4 HOH B 7 307 157 HOH HOH . I 4 HOH B 8 308 106 HOH HOH . I 4 HOH B 9 309 158 HOH HOH . I 4 HOH B 10 310 178 HOH HOH . I 4 HOH B 11 311 213 HOH HOH . I 4 HOH B 12 312 46 HOH HOH . I 4 HOH B 13 313 215 HOH HOH . I 4 HOH B 14 314 90 HOH HOH . I 4 HOH B 15 315 109 HOH HOH . I 4 HOH B 16 316 19 HOH HOH . I 4 HOH B 17 317 130 HOH HOH . I 4 HOH B 18 318 20 HOH HOH . I 4 HOH B 19 319 36 HOH HOH . I 4 HOH B 20 320 108 HOH HOH . I 4 HOH B 21 321 186 HOH HOH . I 4 HOH B 22 322 95 HOH HOH . I 4 HOH B 23 323 15 HOH HOH . I 4 HOH B 24 324 107 HOH HOH . I 4 HOH B 25 325 98 HOH HOH . I 4 HOH B 26 326 49 HOH HOH . I 4 HOH B 27 327 202 HOH HOH . I 4 HOH B 28 328 44 HOH HOH . I 4 HOH B 29 329 113 HOH HOH . I 4 HOH B 30 330 21 HOH HOH . I 4 HOH B 31 331 139 HOH HOH . I 4 HOH B 32 332 13 HOH HOH . I 4 HOH B 33 333 2 HOH HOH . I 4 HOH B 34 334 114 HOH HOH . I 4 HOH B 35 335 84 HOH HOH . I 4 HOH B 36 336 118 HOH HOH . I 4 HOH B 37 337 170 HOH HOH . I 4 HOH B 38 338 71 HOH HOH . I 4 HOH B 39 339 144 HOH HOH . I 4 HOH B 40 340 4 HOH HOH . I 4 HOH B 41 341 120 HOH HOH . I 4 HOH B 42 342 31 HOH HOH . I 4 HOH B 43 343 134 HOH HOH . I 4 HOH B 44 344 32 HOH HOH . I 4 HOH B 45 345 204 HOH HOH . I 4 HOH B 46 346 99 HOH HOH . I 4 HOH B 47 347 3 HOH HOH . I 4 HOH B 48 348 83 HOH HOH . I 4 HOH B 49 349 148 HOH HOH . I 4 HOH B 50 350 17 HOH HOH . I 4 HOH B 51 351 45 HOH HOH . I 4 HOH B 52 352 203 HOH HOH . I 4 HOH B 53 353 59 HOH HOH . I 4 HOH B 54 354 55 HOH HOH . I 4 HOH B 55 355 34 HOH HOH . I 4 HOH B 56 356 41 HOH HOH . I 4 HOH B 57 357 110 HOH HOH . I 4 HOH B 58 358 82 HOH HOH . I 4 HOH B 59 359 91 HOH HOH . I 4 HOH B 60 360 33 HOH HOH . I 4 HOH B 61 361 12 HOH HOH . I 4 HOH B 62 362 97 HOH HOH . I 4 HOH B 63 363 182 HOH HOH . I 4 HOH B 64 364 169 HOH HOH . I 4 HOH B 65 365 73 HOH HOH . I 4 HOH B 66 366 62 HOH HOH . I 4 HOH B 67 367 23 HOH HOH . I 4 HOH B 68 368 1 HOH HOH . I 4 HOH B 69 369 35 HOH HOH . I 4 HOH B 70 370 126 HOH HOH . I 4 HOH B 71 371 92 HOH HOH . I 4 HOH B 72 372 141 HOH HOH . I 4 HOH B 73 373 116 HOH HOH . I 4 HOH B 74 374 135 HOH HOH . I 4 HOH B 75 375 38 HOH HOH . I 4 HOH B 76 376 64 HOH HOH . I 4 HOH B 77 377 53 HOH HOH . I 4 HOH B 78 378 26 HOH HOH . I 4 HOH B 79 379 72 HOH HOH . I 4 HOH B 80 380 151 HOH HOH . I 4 HOH B 81 381 165 HOH HOH . I 4 HOH B 82 382 150 HOH HOH . I 4 HOH B 83 383 69 HOH HOH . I 4 HOH B 84 384 185 HOH HOH . I 4 HOH B 85 385 93 HOH HOH . I 4 HOH B 86 386 56 HOH HOH . I 4 HOH B 87 387 85 HOH HOH . I 4 HOH B 88 388 156 HOH HOH . I 4 HOH B 89 389 159 HOH HOH . I 4 HOH B 90 390 88 HOH HOH . I 4 HOH B 91 391 167 HOH HOH . I 4 HOH B 92 392 40 HOH HOH . I 4 HOH B 93 393 104 HOH HOH . I 4 HOH B 94 394 189 HOH HOH . I 4 HOH B 95 395 198 HOH HOH . I 4 HOH B 96 396 79 HOH HOH . I 4 HOH B 97 397 191 HOH HOH . I 4 HOH B 98 398 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . E 2 -10.531 5.515 -24.41 1 41.79 ? C1 RET 201 B 1 HETATM 2 C C2 RET . . . E 2 -10.54 5.791 -22.91 1 40.83 ? C2 RET 201 B 1 HETATM 3 C C3 RET . . . E 2 -9.797 4.737 -22.109 1 38.7 ? C3 RET 201 B 1 HETATM 4 C C4 RET . . . E 2 -10.404 3.402 -22.465 1 39.83 ? C4 RET 201 B 1 HETATM 5 C C5 RET . . . E 2 -9.928 3.147 -23.865 1 35.94 ? C5 RET 201 B 1 HETATM 6 C C6 RET . . . E 2 -9.988 4.144 -24.781 1 33.24 ? C6 RET 201 B 1 HETATM 7 C C7 RET . . . E 2 -9.535 4.032 -26.194 1 31.85 ? C7 RET 201 B 1 HETATM 8 C C8 RET . . . E 2 -8.42 3.398 -26.558 1 40.86 ? C8 RET 201 B 1 HETATM 9 C C9 RET . . . E 2 -7.964 3.274 -27.952 1 39.62 ? C9 RET 201 B 1 HETATM 10 C C10 RET . . . E 2 -7.009 2.367 -28.203 1 38.84 ? C10 RET 201 B 1 HETATM 11 C C11 RET . . . E 2 -6.473 2.119 -29.538 1 36.37 ? C11 RET 201 B 1 HETATM 12 C C12 RET . . . E 2 -5.482 1.241 -29.673 1 39.09 ? C12 RET 201 B 1 HETATM 13 C C13 RET . . . E 2 -4.945 0.953 -31.012 1 31.84 ? C13 RET 201 B 1 HETATM 14 C C14 RET . . . E 2 -3.927 0.097 -31.179 1 34.08 ? C14 RET 201 B 1 HETATM 15 C C15 RET . . . E 2 -3.464 -0.15 -32.54 1 34.78 ? C15 RET 201 B 1 HETATM 16 C C16 RET . . . E 2 -9.669 6.556 -25.117 1 32.02 ? C16 RET 201 B 1 HETATM 17 C C17 RET . . . E 2 -11.968 5.612 -24.915 1 42.3 ? C17 RET 201 B 1 HETATM 18 C C18 RET . . . E 2 -9.424 1.753 -24.105 1 43.39 ? C18 RET 201 B 1 HETATM 19 C C19 RET . . . E 2 -8.527 4.154 -29.032 1 33.01 ? C19 RET 201 B 1 HETATM 20 C C20 RET . . . E 2 -5.564 1.608 -32.208 1 36.65 ? C20 RET 201 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #