data_5F84 # _model_server_result.job_id 2AQOoZCHVWAY9UQaVRXP-Q _model_server_result.datetime_utc '2024-11-23 01:07:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 5F84 # _exptl.entry_id 5F84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5F84 _cell.length_a 271.016 _cell.length_b 271.016 _cell.length_c 47.427 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 64 1_555 A SG CYS 63 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf2 A SG CYS 61 A CYS 73 1_555 A SG CYS 366 A CYS 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 108 A CYS 120 1_555 A SG CYS 114 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 270 A CYS 282 1_555 A SG CYS 293 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 B SG CYS 9 B CYS 51 1_555 B SG CYS 20 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 14 B CYS 56 1_555 B SG CYS 29 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf7 B SG CYS 31 B CYS 73 1_555 B SG CYS 40 B CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? covale ? covale1 B OG SER 11 B SER 53 1_555 I C1 BGC . B BGC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 314 n n S O2 SO4 doub 315 n n S O3 SO4 sing 316 n n S O4 SO4 sing 317 n n # _atom_sites.entry_id 5F84 _atom_sites.fract_transf_matrix[1][1] 0.00369 _atom_sites.fract_transf_matrix[1][2] 0.00213 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UDP A 1 501 1 UDP UDP . D 4 SO4 A 1 502 1 SO4 SO4 . E 4 SO4 A 1 503 2 SO4 SO4 . F 4 SO4 A 1 504 3 SO4 SO4 . G 4 SO4 A 1 505 4 SO4 SO4 . H 4 SO4 A 1 506 5 SO4 SO4 . I 5 BGC B 1 101 455 BGC BGC . J 6 HOH A 1 601 73 HOH HOH . J 6 HOH A 2 602 88 HOH HOH . J 6 HOH A 3 603 19 HOH HOH . J 6 HOH A 4 604 58 HOH HOH . J 6 HOH A 5 605 46 HOH HOH . J 6 HOH A 6 606 89 HOH HOH . J 6 HOH A 7 607 18 HOH HOH . J 6 HOH A 8 608 36 HOH HOH . J 6 HOH A 9 609 85 HOH HOH . J 6 HOH A 10 610 48 HOH HOH . J 6 HOH A 11 611 50 HOH HOH . J 6 HOH A 12 612 92 HOH HOH . J 6 HOH A 13 613 22 HOH HOH . J 6 HOH A 14 614 43 HOH HOH . J 6 HOH A 15 615 44 HOH HOH . J 6 HOH A 16 616 10 HOH HOH . J 6 HOH A 17 617 87 HOH HOH . J 6 HOH A 18 618 63 HOH HOH . J 6 HOH A 19 619 21 HOH HOH . J 6 HOH A 20 620 17 HOH HOH . J 6 HOH A 21 621 83 HOH HOH . J 6 HOH A 22 622 57 HOH HOH . J 6 HOH A 23 623 12 HOH HOH . J 6 HOH A 24 624 15 HOH HOH . J 6 HOH A 25 625 99 HOH HOH . J 6 HOH A 26 626 40 HOH HOH . J 6 HOH A 27 627 51 HOH HOH . J 6 HOH A 28 628 35 HOH HOH . J 6 HOH A 29 629 79 HOH HOH . J 6 HOH A 30 630 61 HOH HOH . J 6 HOH A 31 631 29 HOH HOH . J 6 HOH A 32 632 39 HOH HOH . J 6 HOH A 33 633 47 HOH HOH . J 6 HOH A 34 634 97 HOH HOH . J 6 HOH A 35 635 11 HOH HOH . J 6 HOH A 36 636 8 HOH HOH . J 6 HOH A 37 637 84 HOH HOH . J 6 HOH A 38 638 80 HOH HOH . J 6 HOH A 39 639 4 HOH HOH . J 6 HOH A 40 640 38 HOH HOH . J 6 HOH A 41 641 32 HOH HOH . J 6 HOH A 42 642 13 HOH HOH . J 6 HOH A 43 643 74 HOH HOH . J 6 HOH A 44 644 16 HOH HOH . J 6 HOH A 45 645 7 HOH HOH . J 6 HOH A 46 646 25 HOH HOH . J 6 HOH A 47 647 49 HOH HOH . J 6 HOH A 48 648 34 HOH HOH . J 6 HOH A 49 649 42 HOH HOH . J 6 HOH A 50 650 31 HOH HOH . J 6 HOH A 51 651 91 HOH HOH . J 6 HOH A 52 652 41 HOH HOH . J 6 HOH A 53 653 67 HOH HOH . J 6 HOH A 54 654 33 HOH HOH . J 6 HOH A 55 655 70 HOH HOH . J 6 HOH A 56 656 90 HOH HOH . J 6 HOH A 57 657 5 HOH HOH . J 6 HOH A 58 658 9 HOH HOH . J 6 HOH A 59 659 53 HOH HOH . J 6 HOH A 60 660 81 HOH HOH . J 6 HOH A 61 661 37 HOH HOH . J 6 HOH A 62 662 68 HOH HOH . J 6 HOH A 63 663 30 HOH HOH . J 6 HOH A 64 664 20 HOH HOH . J 6 HOH A 65 665 78 HOH HOH . J 6 HOH A 66 666 69 HOH HOH . J 6 HOH A 67 667 6 HOH HOH . J 6 HOH A 68 668 23 HOH HOH . J 6 HOH A 69 669 95 HOH HOH . J 6 HOH A 70 670 86 HOH HOH . J 6 HOH A 71 671 28 HOH HOH . J 6 HOH A 72 672 54 HOH HOH . J 6 HOH A 73 673 52 HOH HOH . J 6 HOH A 74 674 55 HOH HOH . J 6 HOH A 75 675 75 HOH HOH . J 6 HOH A 76 676 14 HOH HOH . J 6 HOH A 77 677 3 HOH HOH . J 6 HOH A 78 678 66 HOH HOH . J 6 HOH A 79 679 94 HOH HOH . J 6 HOH A 80 680 26 HOH HOH . J 6 HOH A 81 681 60 HOH HOH . J 6 HOH A 82 682 56 HOH HOH . J 6 HOH A 83 683 64 HOH HOH . J 6 HOH A 84 684 76 HOH HOH . J 6 HOH A 85 685 82 HOH HOH . J 6 HOH A 86 686 77 HOH HOH . J 6 HOH A 87 687 65 HOH HOH . K 6 HOH B 1 201 45 HOH HOH . K 6 HOH B 2 202 96 HOH HOH . K 6 HOH B 3 203 59 HOH HOH . K 6 HOH B 4 204 24 HOH HOH . K 6 HOH B 5 205 72 HOH HOH . K 6 HOH B 6 206 62 HOH HOH . K 6 HOH B 7 207 27 HOH HOH . K 6 HOH B 8 208 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 4 49.165 14.332 21.04 1 37.23 ? S SO4 502 A 1 HETATM 2 O O1 SO4 . . . D 4 50.008 14.514 19.833 1 36.23 ? O1 SO4 502 A 1 HETATM 3 O O2 SO4 . . . D 4 47.837 14.938 20.837 1 36.91 ? O2 SO4 502 A 1 HETATM 4 O O3 SO4 . . . D 4 49.006 12.885 21.268 1 38.07 ? O3 SO4 502 A 1 HETATM 5 O O4 SO4 . . . D 4 49.786 14.969 22.237 1 36.51 ? O4 SO4 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #