data_5F8B # _model_server_result.job_id EtjWoSrn9W0RdBAx57dEew _model_server_result.datetime_utc '2025-03-06 21:30:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f8b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5F8B # _exptl.entry_id 5F8B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5F8B _cell.length_a 123.331 _cell.length_b 123.331 _cell.length_c 75.638 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F8B _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C SG2 GSH . A GSH 302 1_555 D C10 PZS . A PZS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? metalc ? metalc1 B CO CO . A CO 301 1_555 E O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 B CO CO . A CO 301 1_555 E O HOH . A HOH 412 11_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 5F8B _atom_sites.fract_transf_matrix[1][1] 0.008108 _atom_sites.fract_transf_matrix[1][2] 0.004681 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 301 1 CO CO . C 3 GSH A 1 302 3 GSH PZS . D 4 PZS A 1 303 3 PZS PZS . E 5 HOH A 1 401 12 HOH HOH . E 5 HOH A 2 402 8 HOH HOH . E 5 HOH A 3 403 2 HOH HOH . E 5 HOH A 4 404 10 HOH HOH . E 5 HOH A 5 405 7 HOH HOH . E 5 HOH A 6 406 3 HOH HOH . E 5 HOH A 7 407 1 HOH HOH . E 5 HOH A 8 408 6 HOH HOH . E 5 HOH A 9 409 9 HOH HOH . E 5 HOH A 10 410 4 HOH HOH . E 5 HOH A 11 411 5 HOH HOH . E 5 HOH A 12 412 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . C 3 54.93 1.867 5.169 1 61.92 ? N1 GSH 302 A 1 HETATM 2 C CA1 GSH . . . C 3 54.846 2.571 6.465 1 53.76 ? CA1 GSH 302 A 1 HETATM 3 C C1 GSH . . . C 3 53.58 3.393 6.355 1 55.69 ? C1 GSH 302 A 1 HETATM 4 O O11 GSH . . . C 3 53.172 3.594 5.232 1 54.33 ? O11 GSH 302 A 1 HETATM 5 O O12 GSH . . . C 3 52.899 3.919 7.38 1 92.06 ? O12 GSH 302 A 1 HETATM 6 C CB1 GSH . . . C 3 56.099 3.449 6.607 1 62.4 ? CB1 GSH 302 A 1 HETATM 7 C CG1 GSH . . . C 3 56.106 4.518 7.706 1 59.13 ? CG1 GSH 302 A 1 HETATM 8 C CD1 GSH . . . C 3 57.504 5.077 7.886 1 66.25 ? CD1 GSH 302 A 1 HETATM 9 O OE1 GSH . . . C 3 58.478 4.429 7.548 1 70.98 ? OE1 GSH 302 A 1 HETATM 10 N N2 GSH . . . C 3 57.599 6.273 8.462 1 69.99 ? N2 GSH 302 A 1 HETATM 11 C CA2 GSH . . . C 3 58.838 6.94 8.847 1 77.73 ? CA2 GSH 302 A 1 HETATM 12 C C2 GSH . . . C 3 59.348 6.553 10.227 1 81.76 ? C2 GSH 302 A 1 HETATM 13 O O2 GSH . . . C 3 58.574 6.555 11.183 1 66.47 ? O2 GSH 302 A 1 HETATM 14 C CB2 GSH . . . C 3 58.553 8.433 8.745 1 78.34 ? CB2 GSH 302 A 1 HETATM 15 S SG2 GSH . . . C 3 58.211 8.97 7.069 1 76.58 ? SG2 GSH 302 A 1 HETATM 16 N N3 GSH . . . C 3 60.65 6.212 10.35 1 91.93 ? N3 GSH 302 A 1 HETATM 17 C CA3 GSH . . . C 3 61.3 5.875 11.619 1 87.65 ? CA3 GSH 302 A 1 HETATM 18 C C3 GSH . . . C 3 61.943 4.495 11.704 1 95.73 ? C3 GSH 302 A 1 HETATM 19 O O31 GSH . . . C 3 61.577 3.578 10.982 1 98.43 ? O31 GSH 302 A 1 HETATM 20 O O32 GSH . . . C 3 62.914 4.222 12.595 1 88.86 ? O32 GSH 302 A 1 HETATM 21 H HN11 GSH . . . C 3 54.097 1.268 5.047 1 74.3 ? HN11 GSH 302 A 1 HETATM 22 H HN12 GSH . . . C 3 55.781 1.281 5.149 1 74.3 ? HN12 GSH 302 A 1 HETATM 23 H HA1 GSH . . . C 3 54.779 1.862 7.302 1 64.52 ? HA1 GSH 302 A 1 HETATM 24 H H12 GSH . . . C 3 52.605 3.21 7.969 1 110.47 ? H12 GSH 302 A 1 HETATM 25 H HB12 GSH . . . C 3 56.955 2.791 6.772 1 74.88 ? HB12 GSH 302 A 1 HETATM 26 H HB13 GSH . . . C 3 56.271 3.948 5.651 1 74.88 ? HB13 GSH 302 A 1 HETATM 27 H HG12 GSH . . . C 3 55.42 5.325 7.437 1 70.96 ? HG12 GSH 302 A 1 HETATM 28 H HG13 GSH . . . C 3 55.762 4.081 8.645 1 70.96 ? HG13 GSH 302 A 1 HETATM 29 H HN2 GSH . . . C 3 56.743 6.749 8.706 1 83.99 ? HN2 GSH 302 A 1 HETATM 30 H HA2 GSH . . . C 3 59.61 6.689 8.106 1 93.27 ? HA2 GSH 302 A 1 HETATM 31 H HB22 GSH . . . C 3 57.697 8.676 9.378 1 94.01 ? HB22 GSH 302 A 1 HETATM 32 H HB23 GSH . . . C 3 59.412 8.987 9.128 1 94.01 ? HB23 GSH 302 A 1 HETATM 33 H HN3 GSH . . . C 3 61.231 6.218 9.524 1 110.31 ? HN3 GSH 302 A 1 HETATM 34 H HA31 GSH . . . C 3 60.558 5.958 12.417 1 105.18 ? HA31 GSH 302 A 1 HETATM 35 H HA32 GSH . . . C 3 62.068 6.625 11.821 1 105.18 ? HA32 GSH 302 A 1 HETATM 36 H H32 GSH . . . C 3 63.192 3.301 12.496 1 106.63 ? H32 GSH 302 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 36 #