data_5F8P # _model_server_result.job_id MdD6_swaSUIW8pPokZLsPg _model_server_result.datetime_utc '2024-11-30 07:48:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5F8P # _exptl.entry_id 5F8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 369.239 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-chloranyl-6-[(2~{S})-6-chloranyl-2,4,4-trimethyl-7-oxidanyl-3~{H}-chromen-2-yl]benzene-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5F8P _cell.length_a 142.218 _cell.length_b 142.218 _cell.length_c 83.028 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 77 1_555 A SG CYS 366 A CYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 78 A CYS 104 1_555 A SG CYS 300 A CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 430 A CYS 456 1_555 A SG CYS 446 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc1 A OD1 ASP 207 A ASP 233 1_555 E FE FE2 . A FE2 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc2 A NE2 HIS 281 A HIS 307 1_555 E FE FE2 . A FE2 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc3 D O5 AKG . A AKG 603 1_555 E FE FE2 . A FE2 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? # _chem_comp.formula 'C18 H18 Cl2 O4' _chem_comp.formula_weight 369.239 _chem_comp.id FIJ _chem_comp.mon_nstd_flag . _chem_comp.name 4-chloranyl-6-[(2~{S})-6-chloranyl-2,4,4-trimethyl-7-oxidanyl-3~{H}-chromen-2-yl]benzene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C07 FIJ sing 98 n n CL1 C05 FIJ sing 99 n n C12 C07 FIJ sing 100 n n C06 C05 FIJ sing 101 n y C06 C01 FIJ doub 102 n y C07 C01 FIJ sing 103 n n C07 C08 FIJ sing 104 n n C05 C04 FIJ doub 105 n y C01 C02 FIJ sing 106 n y C08 C09 FIJ sing 107 n n O C11 FIJ sing 108 n n C04 O02 FIJ sing 109 n n C04 C03 FIJ sing 110 n y C02 C03 FIJ doub 111 n y C02 O01 FIJ sing 112 n n C09 O01 FIJ sing 113 n n C09 C15 FIJ sing 114 n n C09 C14 FIJ sing 115 n n C11 C15 FIJ sing 116 n y C11 C10 FIJ doub 117 n y C15 C16 FIJ doub 118 n y C10 C FIJ sing 119 n y C16 C17 FIJ sing 120 n y C C17 FIJ doub 121 n y C O03 FIJ sing 122 n n C17 CL FIJ sing 123 n n C14 H1 FIJ sing 124 n n C14 H2 FIJ sing 125 n n C14 H3 FIJ sing 126 n n C16 H4 FIJ sing 127 n n C10 H5 FIJ sing 128 n n C12 H6 FIJ sing 129 n n C12 H7 FIJ sing 130 n n C12 H8 FIJ sing 131 n n C13 H9 FIJ sing 132 n n C13 H10 FIJ sing 133 n n C13 H11 FIJ sing 134 n n C03 H12 FIJ sing 135 n n C06 H13 FIJ sing 136 n n C08 H14 FIJ sing 137 n n C08 H15 FIJ sing 138 n n O02 H16 FIJ sing 139 n n O03 H17 FIJ sing 140 n n O H18 FIJ sing 141 n n # _atom_sites.entry_id 5F8P _atom_sites.fract_transf_matrix[1][1] 0.007031 _atom_sites.fract_transf_matrix[1][2] 0.00406 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008119 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 601 1 SO4 SO4 . C 3 FIJ A 1 602 0 FIJ FIJ . D 4 AKG A 1 603 1 AKG AKG . E 5 FE2 A 1 604 300 FE2 FE2 . F 6 HOH A 1 701 5 HOH HOH . F 6 HOH A 2 702 24 HOH HOH . F 6 HOH A 3 703 13 HOH HOH . F 6 HOH A 4 704 2 HOH HOH . F 6 HOH A 5 705 51 HOH HOH . F 6 HOH A 6 706 21 HOH HOH . F 6 HOH A 7 707 45 HOH HOH . F 6 HOH A 8 708 25 HOH HOH . F 6 HOH A 9 709 18 HOH HOH . F 6 HOH A 10 710 32 HOH HOH . F 6 HOH A 11 711 88 HOH HOH . F 6 HOH A 12 712 15 HOH HOH . F 6 HOH A 13 713 34 HOH HOH . F 6 HOH A 14 714 59 HOH HOH . F 6 HOH A 15 715 67 HOH HOH . F 6 HOH A 16 716 8 HOH HOH . F 6 HOH A 17 717 7 HOH HOH . F 6 HOH A 18 718 79 HOH HOH . F 6 HOH A 19 719 64 HOH HOH . F 6 HOH A 20 720 19 HOH HOH . F 6 HOH A 21 721 23 HOH HOH . F 6 HOH A 22 722 17 HOH HOH . F 6 HOH A 23 723 69 HOH HOH . F 6 HOH A 24 724 33 HOH HOH . F 6 HOH A 25 725 54 HOH HOH . F 6 HOH A 26 726 31 HOH HOH . F 6 HOH A 27 727 6 HOH HOH . F 6 HOH A 28 728 27 HOH HOH . F 6 HOH A 29 729 3 HOH HOH . F 6 HOH A 30 730 74 HOH HOH . F 6 HOH A 31 731 76 HOH HOH . F 6 HOH A 32 732 41 HOH HOH . F 6 HOH A 33 733 55 HOH HOH . F 6 HOH A 34 734 86 HOH HOH . F 6 HOH A 35 735 1 HOH HOH . F 6 HOH A 36 736 47 HOH HOH . F 6 HOH A 37 737 11 HOH HOH . F 6 HOH A 38 738 26 HOH HOH . F 6 HOH A 39 739 28 HOH HOH . F 6 HOH A 40 740 22 HOH HOH . F 6 HOH A 41 741 30 HOH HOH . F 6 HOH A 42 742 4 HOH HOH . F 6 HOH A 43 743 20 HOH HOH . F 6 HOH A 44 744 63 HOH HOH . F 6 HOH A 45 745 78 HOH HOH . F 6 HOH A 46 746 57 HOH HOH . F 6 HOH A 47 747 80 HOH HOH . F 6 HOH A 48 748 12 HOH HOH . F 6 HOH A 49 749 16 HOH HOH . F 6 HOH A 50 750 10 HOH HOH . F 6 HOH A 51 751 81 HOH HOH . F 6 HOH A 52 752 46 HOH HOH . F 6 HOH A 53 753 83 HOH HOH . F 6 HOH A 54 754 56 HOH HOH . F 6 HOH A 55 755 43 HOH HOH . F 6 HOH A 56 756 71 HOH HOH . F 6 HOH A 57 757 37 HOH HOH . F 6 HOH A 58 758 14 HOH HOH . F 6 HOH A 59 759 77 HOH HOH . F 6 HOH A 60 760 39 HOH HOH . F 6 HOH A 61 761 48 HOH HOH . F 6 HOH A 62 762 9 HOH HOH . F 6 HOH A 63 763 29 HOH HOH . F 6 HOH A 64 764 58 HOH HOH . F 6 HOH A 65 765 75 HOH HOH . F 6 HOH A 66 766 66 HOH HOH . F 6 HOH A 67 767 73 HOH HOH . F 6 HOH A 68 768 84 HOH HOH . F 6 HOH A 69 769 35 HOH HOH . F 6 HOH A 70 770 53 HOH HOH . F 6 HOH A 71 771 85 HOH HOH . F 6 HOH A 72 772 40 HOH HOH . F 6 HOH A 73 773 36 HOH HOH . F 6 HOH A 74 774 65 HOH HOH . F 6 HOH A 75 775 87 HOH HOH . F 6 HOH A 76 776 50 HOH HOH . F 6 HOH A 77 777 52 HOH HOH . F 6 HOH A 78 778 49 HOH HOH . F 6 HOH A 79 779 62 HOH HOH . F 6 HOH A 80 780 42 HOH HOH . F 6 HOH A 81 781 68 HOH HOH . F 6 HOH A 82 782 44 HOH HOH . F 6 HOH A 83 783 38 HOH HOH . F 6 HOH A 84 784 70 HOH HOH . F 6 HOH A 85 785 89 HOH HOH . F 6 HOH A 86 786 72 HOH HOH . F 6 HOH A 87 787 61 HOH HOH . F 6 HOH A 88 788 82 HOH HOH . F 6 HOH A 89 789 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 FIJ . . . C 3 -18.866 -26.47 -32.223 1 76.41 ? C14 FIJ 602 A 1 HETATM 2 C C15 FIJ . . . C 3 -18.86 -24.097 -32.399 1 72.52 ? C15 FIJ 602 A 1 HETATM 3 C C16 FIJ . . . C 3 -19.482 -23.352 -31.417 1 70.34 ? C16 FIJ 602 A 1 HETATM 4 C C17 FIJ . . . C 3 -18.873 -22.242 -30.864 1 73.05 ? C17 FIJ 602 A 1 HETATM 5 C C10 FIJ . . . C 3 -16.952 -22.661 -32.181 1 67.71 ? C10 FIJ 602 A 1 HETATM 6 C C11 FIJ . . . C 3 -17.554 -23.782 -32.749 1 70.8 ? C11 FIJ 602 A 1 HETATM 7 C C12 FIJ . . . C 3 -19.357 -23.49 -35.643 1 72.63 ? C12 FIJ 602 A 1 HETATM 8 C C13 FIJ . . . C 3 -20.403 -25.501 -36.5 1 71.45 ? C13 FIJ 602 A 1 HETATM 9 C C01 FIJ . . . C 3 -21.429 -24.3 -34.662 1 67.41 ? C01 FIJ 602 A 1 HETATM 10 C C02 FIJ . . . C 3 -21.722 -24.616 -33.317 1 65.99 ? C02 FIJ 602 A 1 HETATM 11 C C03 FIJ . . . C 3 -22.987 -24.222 -32.804 1 63.33 ? C03 FIJ 602 A 1 HETATM 12 C C04 FIJ . . . C 3 -23.948 -23.531 -33.543 1 64.3 ? C04 FIJ 602 A 1 HETATM 13 C C05 FIJ . . . C 3 -23.628 -23.218 -34.884 1 65.42 ? C05 FIJ 602 A 1 HETATM 14 C C06 FIJ . . . C 3 -22.389 -23.594 -35.431 1 60.32 ? C06 FIJ 602 A 1 HETATM 15 C C07 FIJ . . . C 3 -20.124 -24.713 -35.268 1 72.85 ? C07 FIJ 602 A 1 HETATM 16 C C08 FIJ . . . C 3 -19.29 -25.546 -34.358 1 75.77 ? C08 FIJ 602 A 1 HETATM 17 C C09 FIJ . . . C 3 -19.534 -25.331 -32.904 1 74.47 ? C09 FIJ 602 A 1 HETATM 18 C C FIJ . . . C 3 -17.585 -21.867 -31.228 1 68.11 ? C FIJ 602 A 1 HETATM 19 O O01 FIJ . . . C 3 -20.855 -25.355 -32.535 1 70.23 ? O01 FIJ 602 A 1 HETATM 20 O O02 FIJ . . . C 3 -25.153 -23.165 -32.984 1 67.53 ? O02 FIJ 602 A 1 HETATM 21 O O03 FIJ . . . C 3 -16.964 -20.776 -30.667 1 61.42 ? O03 FIJ 602 A 1 HETATM 22 O O FIJ . . . C 3 -16.868 -24.528 -33.678 1 72.59 ? O FIJ 602 A 1 HETATM 23 CL CL1 FIJ . . . C 3 -24.767 -22.361 -35.867 1 70.65 ? CL1 FIJ 602 A 1 HETATM 24 CL CL FIJ . . . C 3 -19.736 -21.315 -29.686 1 81.19 ? CL FIJ 602 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #