data_5F8Z # _model_server_result.job_id bixXVNp2kh666HBT6ufkDg _model_server_result.datetime_utc '2024-11-27 00:01:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f8z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":100}' # _entry.id 5F8Z # _exptl.entry_id 5F8Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 127.188 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description piperidine-1-carboximidamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5F8Z _cell.length_a 90.279 _cell.length_b 90.279 _cell.length_c 57.623 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F8Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf5 B SG CYS 1 B CYS 1 1_555 B SG CYS 10 B CYS 10 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 B SG CYS 1 B CYS 1 1_555 B SG CYS 10 B CYS 10 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.047 ? covale ? covale1 B CB ALA 6 B ALA 6 1_555 H C1 MRZ . B MRZ 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? # _chem_comp.formula 'C6 H13 N3' _chem_comp.formula_weight 127.188 _chem_comp.id MRZ _chem_comp.mon_nstd_flag . _chem_comp.name piperidine-1-carboximidamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C7 MRZ doub 237 n n C3 C2 MRZ sing 238 n n C3 N4 MRZ sing 239 n n C2 C1 MRZ sing 240 n n C7 N4 MRZ sing 241 n n C7 N8 MRZ sing 242 n n N4 C5 MRZ sing 243 n n C1 C6 MRZ sing 244 n n C5 C6 MRZ sing 245 n n C1 H1 MRZ sing 246 n n C1 H2 MRZ sing 247 n n C6 H3 MRZ sing 248 n n C6 H4 MRZ sing 249 n n C5 H5 MRZ sing 250 n n C5 H6 MRZ sing 251 n n C3 H7 MRZ sing 252 n n C3 H8 MRZ sing 253 n n C2 H9 MRZ sing 254 n n C2 H10 MRZ sing 255 n n N8 H11 MRZ sing 256 n n N8 H12 MRZ sing 257 n n N9 H13 MRZ sing 258 n n # _atom_sites.entry_id 5F8Z _atom_sites.fract_transf_matrix[1][1] 0.011077 _atom_sites.fract_transf_matrix[1][2] 0.006395 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 301 301 SO4 SO4 . D 3 SO4 A 1 302 302 SO4 SO4 . E 3 SO4 A 1 303 303 SO4 SO4 . F 3 SO4 A 1 304 304 SO4 SO4 . G 3 SO4 A 1 305 305 SO4 SO4 . H 4 MRZ B 1 100 100 MRZ MRZ . I 5 HOH A 1 401 403 HOH HOH . I 5 HOH A 2 402 404 HOH HOH . I 5 HOH A 3 403 426 HOH HOH . I 5 HOH A 4 404 441 HOH HOH . I 5 HOH A 5 405 405 HOH HOH . I 5 HOH A 6 406 402 HOH HOH . I 5 HOH A 7 407 406 HOH HOH . I 5 HOH A 8 408 428 HOH HOH . I 5 HOH A 9 409 408 HOH HOH . I 5 HOH A 10 410 412 HOH HOH . I 5 HOH A 11 411 424 HOH HOH . I 5 HOH A 12 412 422 HOH HOH . I 5 HOH A 13 413 411 HOH HOH . I 5 HOH A 14 414 421 HOH HOH . I 5 HOH A 15 415 456 HOH HOH . I 5 HOH A 16 416 420 HOH HOH . I 5 HOH A 17 417 442 HOH HOH . I 5 HOH A 18 418 423 HOH HOH . I 5 HOH A 19 419 463 HOH HOH . I 5 HOH A 20 420 413 HOH HOH . I 5 HOH A 21 421 414 HOH HOH . I 5 HOH A 22 422 431 HOH HOH . I 5 HOH A 23 423 427 HOH HOH . I 5 HOH A 24 424 475 HOH HOH . I 5 HOH A 25 425 416 HOH HOH . I 5 HOH A 26 426 429 HOH HOH . I 5 HOH A 27 427 453 HOH HOH . I 5 HOH A 28 428 419 HOH HOH . I 5 HOH A 29 429 418 HOH HOH . I 5 HOH A 30 430 478 HOH HOH . I 5 HOH A 31 431 410 HOH HOH . I 5 HOH A 32 432 432 HOH HOH . I 5 HOH A 33 433 437 HOH HOH . I 5 HOH A 34 434 502 HOH HOH . I 5 HOH A 35 435 450 HOH HOH . I 5 HOH A 36 436 457 HOH HOH . I 5 HOH A 37 437 465 HOH HOH . I 5 HOH A 38 438 435 HOH HOH . I 5 HOH A 39 439 440 HOH HOH . I 5 HOH A 40 440 444 HOH HOH . I 5 HOH A 41 441 417 HOH HOH . I 5 HOH A 42 442 462 HOH HOH . I 5 HOH A 43 443 433 HOH HOH . I 5 HOH A 44 444 497 HOH HOH . I 5 HOH A 45 445 445 HOH HOH . I 5 HOH A 46 446 451 HOH HOH . I 5 HOH A 47 447 482 HOH HOH . I 5 HOH A 48 448 469 HOH HOH . I 5 HOH A 49 449 443 HOH HOH . I 5 HOH A 50 450 474 HOH HOH . I 5 HOH A 51 451 446 HOH HOH . I 5 HOH A 52 452 484 HOH HOH . I 5 HOH A 53 453 466 HOH HOH . I 5 HOH A 54 454 448 HOH HOH . I 5 HOH A 55 455 460 HOH HOH . I 5 HOH A 56 456 407 HOH HOH . I 5 HOH A 57 457 480 HOH HOH . I 5 HOH A 58 458 507 HOH HOH . I 5 HOH A 59 459 461 HOH HOH . I 5 HOH A 60 460 458 HOH HOH . I 5 HOH A 61 461 449 HOH HOH . I 5 HOH A 62 462 438 HOH HOH . I 5 HOH A 63 463 471 HOH HOH . I 5 HOH A 64 464 481 HOH HOH . I 5 HOH A 65 465 536 HOH HOH . I 5 HOH A 66 466 434 HOH HOH . I 5 HOH A 67 467 486 HOH HOH . I 5 HOH A 68 468 483 HOH HOH . I 5 HOH A 69 469 488 HOH HOH . I 5 HOH A 70 470 454 HOH HOH . I 5 HOH A 71 471 436 HOH HOH . I 5 HOH A 72 472 415 HOH HOH . I 5 HOH A 73 473 476 HOH HOH . I 5 HOH A 74 474 452 HOH HOH . I 5 HOH A 75 475 439 HOH HOH . I 5 HOH A 76 476 470 HOH HOH . I 5 HOH A 77 477 472 HOH HOH . I 5 HOH A 78 478 495 HOH HOH . I 5 HOH A 79 479 498 HOH HOH . I 5 HOH A 80 480 464 HOH HOH . I 5 HOH A 81 481 473 HOH HOH . I 5 HOH A 82 482 491 HOH HOH . I 5 HOH A 83 483 511 HOH HOH . I 5 HOH A 84 484 490 HOH HOH . I 5 HOH A 85 485 534 HOH HOH . I 5 HOH A 86 486 459 HOH HOH . I 5 HOH A 87 487 479 HOH HOH . I 5 HOH A 88 488 503 HOH HOH . I 5 HOH A 89 489 492 HOH HOH . I 5 HOH A 90 490 519 HOH HOH . I 5 HOH A 91 491 489 HOH HOH . I 5 HOH A 92 492 455 HOH HOH . I 5 HOH A 93 493 494 HOH HOH . I 5 HOH A 94 494 499 HOH HOH . I 5 HOH A 95 495 485 HOH HOH . I 5 HOH A 96 496 425 HOH HOH . I 5 HOH A 97 497 554 HOH HOH . I 5 HOH A 98 498 526 HOH HOH . I 5 HOH A 99 499 508 HOH HOH . I 5 HOH A 100 500 467 HOH HOH . I 5 HOH A 101 501 500 HOH HOH . I 5 HOH A 102 502 523 HOH HOH . I 5 HOH A 103 503 447 HOH HOH . I 5 HOH A 104 504 513 HOH HOH . I 5 HOH A 105 505 504 HOH HOH . I 5 HOH A 106 506 514 HOH HOH . I 5 HOH A 107 507 518 HOH HOH . I 5 HOH A 108 508 530 HOH HOH . I 5 HOH A 109 509 509 HOH HOH . I 5 HOH A 110 510 522 HOH HOH . I 5 HOH A 111 511 487 HOH HOH . I 5 HOH A 112 512 529 HOH HOH . I 5 HOH A 113 513 506 HOH HOH . I 5 HOH A 114 514 510 HOH HOH . I 5 HOH A 115 515 493 HOH HOH . I 5 HOH A 116 516 512 HOH HOH . I 5 HOH A 117 517 537 HOH HOH . I 5 HOH A 118 518 528 HOH HOH . I 5 HOH A 119 519 477 HOH HOH . I 5 HOH A 120 520 524 HOH HOH . I 5 HOH A 121 521 525 HOH HOH . I 5 HOH A 122 522 468 HOH HOH . I 5 HOH A 123 523 517 HOH HOH . I 5 HOH A 124 524 541 HOH HOH . I 5 HOH A 125 525 535 HOH HOH . I 5 HOH A 126 526 515 HOH HOH . I 5 HOH A 127 527 520 HOH HOH . I 5 HOH A 128 528 532 HOH HOH . I 5 HOH A 129 529 542 HOH HOH . I 5 HOH A 130 530 505 HOH HOH . I 5 HOH A 131 531 543 HOH HOH . I 5 HOH A 132 532 568 HOH HOH . I 5 HOH A 133 533 546 HOH HOH . I 5 HOH A 134 534 533 HOH HOH . I 5 HOH A 135 535 547 HOH HOH . I 5 HOH A 136 536 521 HOH HOH . I 5 HOH A 137 537 545 HOH HOH . I 5 HOH A 138 538 540 HOH HOH . I 5 HOH A 139 539 516 HOH HOH . I 5 HOH A 140 540 501 HOH HOH . I 5 HOH A 141 541 531 HOH HOH . I 5 HOH A 142 542 564 HOH HOH . I 5 HOH A 143 543 539 HOH HOH . I 5 HOH A 144 544 538 HOH HOH . I 5 HOH A 145 545 549 HOH HOH . I 5 HOH A 146 546 552 HOH HOH . I 5 HOH A 147 547 544 HOH HOH . I 5 HOH A 148 548 548 HOH HOH . I 5 HOH A 149 549 557 HOH HOH . I 5 HOH A 150 550 496 HOH HOH . I 5 HOH A 151 551 553 HOH HOH . I 5 HOH A 152 552 550 HOH HOH . I 5 HOH A 153 553 555 HOH HOH . I 5 HOH A 154 554 558 HOH HOH . I 5 HOH A 155 555 409 HOH HOH . I 5 HOH A 156 556 551 HOH HOH . I 5 HOH A 157 557 570 HOH HOH . I 5 HOH A 158 558 562 HOH HOH . I 5 HOH A 159 559 559 HOH HOH . I 5 HOH A 160 560 556 HOH HOH . I 5 HOH A 161 561 566 HOH HOH . I 5 HOH A 162 562 563 HOH HOH . I 5 HOH A 163 563 561 HOH HOH . I 5 HOH A 164 564 560 HOH HOH . I 5 HOH A 165 565 569 HOH HOH . I 5 HOH A 166 566 565 HOH HOH . I 5 HOH A 167 567 527 HOH HOH . I 5 HOH A 168 568 430 HOH HOH . I 5 HOH A 169 569 572 HOH HOH . I 5 HOH A 170 570 573 HOH HOH . I 5 HOH A 171 571 571 HOH HOH . I 5 HOH A 172 572 575 HOH HOH . I 5 HOH A 173 573 581 HOH HOH . I 5 HOH A 174 574 583 HOH HOH . I 5 HOH A 175 575 579 HOH HOH . I 5 HOH A 176 576 576 HOH HOH . I 5 HOH A 177 577 587 HOH HOH . I 5 HOH A 178 578 574 HOH HOH . I 5 HOH A 179 579 580 HOH HOH . I 5 HOH A 180 580 584 HOH HOH . I 5 HOH A 181 581 577 HOH HOH . I 5 HOH A 182 582 586 HOH HOH . I 5 HOH A 183 583 578 HOH HOH . I 5 HOH A 184 584 582 HOH HOH . I 5 HOH A 185 585 588 HOH HOH . I 5 HOH A 186 586 590 HOH HOH . I 5 HOH A 187 587 585 HOH HOH . I 5 HOH A 188 588 589 HOH HOH . I 5 HOH A 189 589 567 HOH HOH . I 5 HOH A 190 590 592 HOH HOH . I 5 HOH A 191 591 591 HOH HOH . I 5 HOH A 192 592 594 HOH HOH . I 5 HOH A 193 593 593 HOH HOH . I 5 HOH A 194 594 595 HOH HOH . I 5 HOH A 195 595 596 HOH HOH . I 5 HOH A 196 596 597 HOH HOH . I 5 HOH A 197 597 599 HOH HOH . J 5 HOH B 1 201 201 HOH HOH . J 5 HOH B 2 202 202 HOH HOH . J 5 HOH B 3 203 203 HOH HOH . J 5 HOH B 4 204 598 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRZ . . . H 4 -31.784 -22.675 -3.082 1 15.7 ? C1 MRZ 100 B 1 HETATM 2 C C6 MRZ . . . H 4 -33.188 -23.264 -3.333 1 15.38 ? C6 MRZ 100 B 1 HETATM 3 C C5 MRZ . . . H 4 -33.227 -23.784 -4.766 1 15.47 ? C5 MRZ 100 B 1 HETATM 4 N N4 MRZ . . . H 4 -32.192 -24.823 -4.983 1 15.57 ? N4 MRZ 100 B 1 HETATM 5 C C3 MRZ . . . H 4 -30.83 -24.453 -4.554 1 16.3 ? C3 MRZ 100 B 1 HETATM 6 C C2 MRZ . . . H 4 -30.814 -23.833 -3.183 1 15.52 ? C2 MRZ 100 B 1 HETATM 7 C C7 MRZ . . . H 4 -32.419 -25.974 -5.649 1 15.71 ? C7 MRZ 100 B 1 HETATM 8 N N8 MRZ . . . H 4 -31.478 -26.7 -6.11 1 18.34 ? N8 MRZ 100 B 1 HETATM 9 N N9 MRZ . . . H 4 -33.64 -26.423 -5.937 1 16.86 ? N9 MRZ 100 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #