data_5F9B # _model_server_result.job_id Cw0xTqHw6-MNX7X2ItmXlQ _model_server_result.datetime_utc '2024-10-12 16:30:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5F9B # _exptl.entry_id 5F9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.699 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Caulophyllogenin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.8 _cell.angle_gamma 90 _cell.entry_id 5F9B _cell.length_a 93.21 _cell.length_b 61.66 _cell.length_c 118.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H48 O5' _chem_comp.formula_weight 488.699 _chem_comp.id 5VN _chem_comp.mon_nstd_flag . _chem_comp.name Caulophyllogenin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 C12 5VN sing 1 n n C12 C10 5VN sing 2 n n O9 C7 5VN sing 3 n n C11 C10 5VN sing 4 n n C10 C7 5VN sing 5 n n C10 C1 5VN sing 6 n n C7 C6 5VN sing 7 n n C1 C19 5VN sing 8 n n C1 C3 5VN sing 9 n n C19 C18 5VN sing 10 n n C6 C5 5VN sing 11 n n C18 C16 5VN sing 12 n n C5 C3 5VN sing 13 n n C3 C4 5VN sing 14 n n C3 C14 5VN sing 15 n n C21 C20 5VN sing 16 n n C14 C16 5VN sing 17 n n C14 C24 5VN sing 18 n n C16 C17 5VN sing 19 n n C16 C20 5VN sing 20 n n C20 C34 5VN sing 21 n n C20 C22 5VN sing 22 n n C34 C31 5VN sing 23 n n O33 C31 5VN sing 24 n n C24 C23 5VN sing 25 n n C31 C27 5VN sing 26 n n C22 C23 5VN doub 27 n n C22 C25 5VN sing 28 n n C40 C25 5VN sing 29 n n C40 C37 5VN sing 30 n n C25 C27 5VN sing 31 n n C27 C28 5VN sing 32 n n C27 C35 5VN sing 33 n n C28 O29 5VN doub 34 n n C28 O30 5VN sing 35 n n C39 C37 5VN sing 36 n n C36 C37 5VN sing 37 n n C36 C35 5VN sing 38 n n C37 C38 5VN sing 39 n n C21 H1 5VN sing 40 n n C21 H2 5VN sing 41 n n C21 H3 5VN sing 42 n n C34 H4 5VN sing 43 n n C34 H5 5VN sing 44 n n C31 H6 5VN sing 45 n n O33 H7 5VN sing 46 n n O30 H8 5VN sing 47 n n C35 H9 5VN sing 48 n n C35 H10 5VN sing 49 n n C36 H11 5VN sing 50 n n C36 H12 5VN sing 51 n n C38 H13 5VN sing 52 n n C38 H14 5VN sing 53 n n C38 H15 5VN sing 54 n n C39 H16 5VN sing 55 n n C39 H17 5VN sing 56 n n C39 H18 5VN sing 57 n n C40 H19 5VN sing 58 n n C40 H20 5VN sing 59 n n C25 H21 5VN sing 60 n n C23 H22 5VN sing 61 n n C24 H23 5VN sing 62 n n C24 H24 5VN sing 63 n n C14 H25 5VN sing 64 n n C17 H26 5VN sing 65 n n C17 H27 5VN sing 66 n n C17 H28 5VN sing 67 n n C18 H29 5VN sing 68 n n C18 H30 5VN sing 69 n n C19 H31 5VN sing 70 n n C19 H32 5VN sing 71 n n C1 H33 5VN sing 72 n n C4 H34 5VN sing 73 n n C4 H35 5VN sing 74 n n C4 H36 5VN sing 75 n n C5 H37 5VN sing 76 n n C5 H38 5VN sing 77 n n C6 H39 5VN sing 78 n n C6 H40 5VN sing 79 n n C7 H41 5VN sing 80 n n O9 H42 5VN sing 81 n n C11 H43 5VN sing 82 n n C11 H44 5VN sing 83 n n C11 H45 5VN sing 84 n n C12 H46 5VN sing 85 n n C12 H47 5VN sing 86 n n O13 H48 5VN sing 87 n n # _atom_sites.entry_id 5F9B _atom_sites.fract_transf_matrix[1][1] 0.010728 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002437 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5VN B 1 501 501 5VN 5VN . D 3 HOH A 1 501 45 HOH HOH . D 3 HOH A 2 502 3 HOH HOH . D 3 HOH A 3 503 70 HOH HOH . D 3 HOH A 4 504 59 HOH HOH . D 3 HOH A 5 505 13 HOH HOH . D 3 HOH A 6 506 18 HOH HOH . D 3 HOH A 7 507 23 HOH HOH . D 3 HOH A 8 508 60 HOH HOH . D 3 HOH A 9 509 74 HOH HOH . D 3 HOH A 10 510 92 HOH HOH . D 3 HOH A 11 511 56 HOH HOH . D 3 HOH A 12 512 82 HOH HOH . D 3 HOH A 13 513 5 HOH HOH . D 3 HOH A 14 514 94 HOH HOH . D 3 HOH A 15 515 95 HOH HOH . D 3 HOH A 16 516 10 HOH HOH . D 3 HOH A 17 517 22 HOH HOH . D 3 HOH A 18 518 87 HOH HOH . D 3 HOH A 19 519 64 HOH HOH . D 3 HOH A 20 520 17 HOH HOH . D 3 HOH A 21 521 30 HOH HOH . D 3 HOH A 22 522 20 HOH HOH . D 3 HOH A 23 523 79 HOH HOH . D 3 HOH A 24 524 14 HOH HOH . D 3 HOH A 25 525 66 HOH HOH . D 3 HOH A 26 526 35 HOH HOH . D 3 HOH A 27 527 38 HOH HOH . D 3 HOH A 28 528 41 HOH HOH . D 3 HOH A 29 529 69 HOH HOH . D 3 HOH A 30 530 72 HOH HOH . D 3 HOH A 31 531 12 HOH HOH . D 3 HOH A 32 532 97 HOH HOH . D 3 HOH A 33 533 1 HOH HOH . D 3 HOH A 34 534 91 HOH HOH . D 3 HOH A 35 535 21 HOH HOH . D 3 HOH A 36 536 49 HOH HOH . D 3 HOH A 37 537 90 HOH HOH . D 3 HOH A 38 538 19 HOH HOH . D 3 HOH A 39 539 16 HOH HOH . D 3 HOH A 40 540 75 HOH HOH . D 3 HOH A 41 541 93 HOH HOH . D 3 HOH A 42 542 89 HOH HOH . D 3 HOH A 43 543 37 HOH HOH . D 3 HOH A 44 544 32 HOH HOH . D 3 HOH A 45 545 54 HOH HOH . D 3 HOH A 46 546 11 HOH HOH . D 3 HOH A 47 547 28 HOH HOH . D 3 HOH A 48 548 62 HOH HOH . D 3 HOH A 49 549 46 HOH HOH . D 3 HOH A 50 550 2 HOH HOH . D 3 HOH A 51 551 58 HOH HOH . D 3 HOH A 52 552 25 HOH HOH . D 3 HOH A 53 553 51 HOH HOH . D 3 HOH A 54 554 40 HOH HOH . D 3 HOH A 55 555 43 HOH HOH . E 3 HOH B 1 601 85 HOH HOH . E 3 HOH B 2 602 47 HOH HOH . E 3 HOH B 3 603 6 HOH HOH . E 3 HOH B 4 604 84 HOH HOH . E 3 HOH B 5 605 26 HOH HOH . E 3 HOH B 6 606 61 HOH HOH . E 3 HOH B 7 607 27 HOH HOH . E 3 HOH B 8 608 29 HOH HOH . E 3 HOH B 9 609 65 HOH HOH . E 3 HOH B 10 610 4 HOH HOH . E 3 HOH B 11 611 63 HOH HOH . E 3 HOH B 12 612 73 HOH HOH . E 3 HOH B 13 613 78 HOH HOH . E 3 HOH B 14 614 31 HOH HOH . E 3 HOH B 15 615 7 HOH HOH . E 3 HOH B 16 616 15 HOH HOH . E 3 HOH B 17 617 44 HOH HOH . E 3 HOH B 18 618 50 HOH HOH . E 3 HOH B 19 619 67 HOH HOH . E 3 HOH B 20 620 53 HOH HOH . E 3 HOH B 21 621 76 HOH HOH . E 3 HOH B 22 622 9 HOH HOH . E 3 HOH B 23 623 39 HOH HOH . E 3 HOH B 24 624 33 HOH HOH . E 3 HOH B 25 625 8 HOH HOH . E 3 HOH B 26 626 34 HOH HOH . E 3 HOH B 27 627 86 HOH HOH . E 3 HOH B 28 628 81 HOH HOH . E 3 HOH B 29 629 52 HOH HOH . E 3 HOH B 30 630 80 HOH HOH . E 3 HOH B 31 631 77 HOH HOH . E 3 HOH B 32 632 57 HOH HOH . E 3 HOH B 33 633 71 HOH HOH . E 3 HOH B 34 634 98 HOH HOH . E 3 HOH B 35 635 55 HOH HOH . E 3 HOH B 36 636 68 HOH HOH . E 3 HOH B 37 637 96 HOH HOH . E 3 HOH B 38 638 88 HOH HOH . E 3 HOH B 39 639 48 HOH HOH . E 3 HOH B 40 640 24 HOH HOH . E 3 HOH B 41 641 36 HOH HOH . E 3 HOH B 42 642 42 HOH HOH . E 3 HOH B 43 643 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 5VN . . . C 2 38.617 -9.707 39.972 0.56 70.44 ? C21 5VN 501 B 1 HETATM 2 C C20 5VN . . . C 2 37.611 -10.034 41.018 0.56 72.01 ? C20 5VN 501 B 1 HETATM 3 C C34 5VN . . . C 2 37.798 -11.468 41.265 0.56 70.97 ? C34 5VN 501 B 1 HETATM 4 C C31 5VN . . . C 2 39.116 -11.835 42.063 0.56 70.38 ? C31 5VN 501 B 1 HETATM 5 O O33 5VN . . . C 2 40.382 -11.506 41.428 0.56 71.41 ? O33 5VN 501 B 1 HETATM 6 C C27 5VN . . . C 2 38.95 -11.192 43.395 0.56 71.51 ? C27 5VN 501 B 1 HETATM 7 C C28 5VN . . . C 2 37.579 -11.741 43.736 0.56 74.98 ? C28 5VN 501 B 1 HETATM 8 O O30 5VN . . . C 2 36.672 -10.93 44.014 0.56 75.61 ? O30 5VN 501 B 1 HETATM 9 O O29 5VN . . . C 2 37.414 -12.961 43.543 0.56 74.37 ? O29 5VN 501 B 1 HETATM 10 C C35 5VN . . . C 2 39.998 -11.604 44.436 0.56 69.47 ? C35 5VN 501 B 1 HETATM 11 C C36 5VN . . . C 2 41.333 -10.877 44.255 0.56 70.98 ? C36 5VN 501 B 1 HETATM 12 C C37 5VN . . . C 2 41.129 -9.364 44.3 0.56 70.14 ? C37 5VN 501 B 1 HETATM 13 C C38 5VN . . . C 2 40.545 -8.938 45.627 0.56 71.63 ? C38 5VN 501 B 1 HETATM 14 C C39 5VN . . . C 2 42.454 -8.633 44.215 0.56 69.58 ? C39 5VN 501 B 1 HETATM 15 C C40 5VN . . . C 2 40.218 -8.983 43.151 0.56 70.15 ? C40 5VN 501 B 1 HETATM 16 C C25 5VN . . . C 2 38.862 -9.672 43.354 0.56 72.32 ? C25 5VN 501 B 1 HETATM 17 C C22 5VN . . . C 2 37.866 -9.232 42.294 0.56 71.4 ? C22 5VN 501 B 1 HETATM 18 C C23 5VN . . . C 2 37.217 -8.046 42.585 0.56 73.06 ? C23 5VN 501 B 1 HETATM 19 C C24 5VN . . . C 2 36.21 -7.504 41.629 0.56 72.04 ? C24 5VN 501 B 1 HETATM 20 C C14 5VN . . . C 2 36.54 -8.113 40.284 0.56 72.89 ? C14 5VN 501 B 1 HETATM 21 C C16 5VN . . . C 2 36.301 -9.664 40.339 0.56 72.93 ? C16 5VN 501 B 1 HETATM 22 C C17 5VN . . . C 2 35.052 -10.155 41.124 0.56 70.22 ? C17 5VN 501 B 1 HETATM 23 C C18 5VN . . . C 2 36.317 -10.292 38.899 0.56 67.89 ? C18 5VN 501 B 1 HETATM 24 C C19 5VN . . . C 2 35.559 -9.463 37.854 0.56 65.31 ? C19 5VN 501 B 1 HETATM 25 C C1 5VN . . . C 2 36.15 -8.049 37.853 0.56 67.28 ? C1 5VN 501 B 1 HETATM 26 C C3 5VN . . . C 2 35.854 -7.346 39.208 0.56 72.66 ? C3 5VN 501 B 1 HETATM 27 C C4 5VN . . . C 2 34.408 -7.204 39.641 0.56 70.74 ? C4 5VN 501 B 1 HETATM 28 C C5 5VN . . . C 2 36.454 -5.977 39.151 0.56 75.14 ? C5 5VN 501 B 1 HETATM 29 C C6 5VN . . . C 2 35.785 -5.188 38.045 0.56 73.88 ? C6 5VN 501 B 1 HETATM 30 C C7 5VN . . . C 2 36.194 -5.791 36.739 0.56 70.3 ? C7 5VN 501 B 1 HETATM 31 O O9 5VN . . . C 2 35.632 -5.027 35.661 0.56 70.29 ? O9 5VN 501 B 1 HETATM 32 C C10 5VN . . . C 2 35.697 -7.226 36.635 0.56 66.01 ? C10 5VN 501 B 1 HETATM 33 C C11 5VN . . . C 2 34.188 -7.23 36.469 0.56 64.71 ? C11 5VN 501 B 1 HETATM 34 C C12 5VN . . . C 2 36.307 -7.823 35.39 0.56 69.23 ? C12 5VN 501 B 1 HETATM 35 O O13 5VN . . . C 2 35.899 -7.067 34.247 0.56 72.21 ? O13 5VN 501 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 35 #