data_5F9J # _model_server_result.job_id J33pfjwb5AM7NQ650dM4AQ _model_server_result.datetime_utc '2025-07-03 20:45:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 5F9J # _exptl.entry_id 5F9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.21 _cell.angle_gamma 90 _cell.entry_id 5F9J _cell.length_a 53.947 _cell.length_b 80.629 _cell.length_c 57.428 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5F9J _atom_sites.fract_transf_matrix[1][1] 0.018537 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008335 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 301 602 GOL GOL . E 4 GOL B 1 601 601 GOL GOL . F 4 GOL C 1 101 603 GOL GOL . G 5 HOH A 1 401 48 HOH HOH . G 5 HOH A 2 402 68 HOH HOH . G 5 HOH A 3 403 63 HOH HOH . G 5 HOH A 4 404 65 HOH HOH . G 5 HOH A 5 405 2 HOH HOH . G 5 HOH A 6 406 59 HOH HOH . G 5 HOH A 7 407 53 HOH HOH . G 5 HOH A 8 408 66 HOH HOH . G 5 HOH A 9 409 18 HOH HOH . G 5 HOH A 10 410 49 HOH HOH . G 5 HOH A 11 411 28 HOH HOH . G 5 HOH A 12 412 64 HOH HOH . G 5 HOH A 13 413 55 HOH HOH . G 5 HOH A 14 414 9 HOH HOH . G 5 HOH A 15 415 52 HOH HOH . G 5 HOH A 16 416 54 HOH HOH . G 5 HOH A 17 417 67 HOH HOH . G 5 HOH A 18 418 10 HOH HOH . G 5 HOH A 19 419 61 HOH HOH . G 5 HOH A 20 420 19 HOH HOH . G 5 HOH A 21 421 6 HOH HOH . G 5 HOH A 22 422 51 HOH HOH . G 5 HOH A 23 423 31 HOH HOH . G 5 HOH A 24 424 35 HOH HOH . G 5 HOH A 25 425 20 HOH HOH . G 5 HOH A 26 426 5 HOH HOH . G 5 HOH A 27 427 30 HOH HOH . G 5 HOH A 28 428 60 HOH HOH . G 5 HOH A 29 429 15 HOH HOH . G 5 HOH A 30 430 57 HOH HOH . G 5 HOH A 31 431 62 HOH HOH . G 5 HOH A 32 432 32 HOH HOH . G 5 HOH A 33 433 43 HOH HOH . G 5 HOH A 34 434 29 HOH HOH . G 5 HOH A 35 435 36 HOH HOH . G 5 HOH A 36 436 50 HOH HOH . G 5 HOH A 37 437 24 HOH HOH . G 5 HOH A 38 438 39 HOH HOH . G 5 HOH A 39 439 27 HOH HOH . G 5 HOH A 40 440 17 HOH HOH . G 5 HOH A 41 441 23 HOH HOH . G 5 HOH A 42 442 69 HOH HOH . G 5 HOH A 43 443 13 HOH HOH . G 5 HOH A 44 444 4 HOH HOH . G 5 HOH A 45 445 14 HOH HOH . G 5 HOH A 46 446 56 HOH HOH . G 5 HOH A 47 447 44 HOH HOH . G 5 HOH A 48 448 46 HOH HOH . G 5 HOH A 49 449 34 HOH HOH . G 5 HOH A 50 450 47 HOH HOH . H 5 HOH B 1 701 21 HOH HOH . H 5 HOH B 2 702 11 HOH HOH . H 5 HOH B 3 703 16 HOH HOH . H 5 HOH B 4 704 1 HOH HOH . H 5 HOH B 5 705 12 HOH HOH . H 5 HOH B 6 706 58 HOH HOH . H 5 HOH B 7 707 25 HOH HOH . H 5 HOH B 8 708 8 HOH HOH . H 5 HOH B 9 709 41 HOH HOH . H 5 HOH B 10 710 40 HOH HOH . H 5 HOH B 11 711 7 HOH HOH . H 5 HOH B 12 712 26 HOH HOH . H 5 HOH B 13 713 71 HOH HOH . H 5 HOH B 14 714 70 HOH HOH . H 5 HOH B 15 715 42 HOH HOH . H 5 HOH B 16 716 3 HOH HOH . H 5 HOH B 17 717 33 HOH HOH . H 5 HOH B 18 718 37 HOH HOH . H 5 HOH B 19 719 45 HOH HOH . H 5 HOH B 20 720 22 HOH HOH . H 5 HOH B 21 721 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 42.072 14.22 18.194 1 24.87 ? C1 GOL 101 C 1 HETATM 2 O O1 GOL . . . F 4 42.669 15.191 17.355 1 25.49 ? O1 GOL 101 C 1 HETATM 3 C C2 GOL . . . F 4 41.035 13.573 17.312 1 25.04 ? C2 GOL 101 C 1 HETATM 4 O O2 GOL . . . F 4 39.717 13.832 17.807 1 24.37 ? O2 GOL 101 C 1 HETATM 5 C C3 GOL . . . F 4 41.288 12.098 17.153 1 25.64 ? C3 GOL 101 C 1 HETATM 6 O O3 GOL . . . F 4 40.314 11.545 16.248 1 27.37 ? O3 GOL 101 C 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #