data_5F9W # _model_server_result.job_id 9ydH1N6n_hr-eUAuwo3KEQ _model_server_result.datetime_utc '2024-12-26 12:19:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":301}' # _entry.id 5F9W # _exptl.entry_id 5F9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5F9W _cell.length_a 123.429 _cell.length_b 123.429 _cell.length_c 127.332 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,KA,LA,MA 1 1 D,E,F,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,NA,OA,PA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 U N N ? 5 IA N N ? 5 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 54 1_555 A SG CYS 31 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 102 A CYS 218 1_555 A SG CYS 131 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 112 A CYS 228 1_555 A SG CYS 123 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 180 A CYS 296 1_555 A SG CYS 199 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 245 A CYS 378 1_555 A SG CYS 306 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 252 A CYS 385 1_555 A SG CYS 279 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 262 A CYS 395 1_555 A SG CYS 271 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 149 B CYS 140 1_555 B SG CYS 205 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 C SG CYS 23 C CYS 23 1_555 C SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 C SG CYS 133 C CYS 134 1_555 C SG CYS 193 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 D SG CYS 11 G CYS 54 1_555 D SG CYS 31 G CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 D SG CYS 76 G CYS 119 1_555 D SG CYS 89 G CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 D SG CYS 102 G CYS 218 1_555 D SG CYS 131 G CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 D SG CYS 112 G CYS 228 1_555 D SG CYS 123 G CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf15 D SG CYS 180 G CYS 296 1_555 D SG CYS 199 G CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 D SG CYS 245 G CYS 378 1_555 D SG CYS 306 G CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 D SG CYS 252 G CYS 385 1_555 D SG CYS 279 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf18 D SG CYS 262 G CYS 395 1_555 D SG CYS 271 G CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf19 E SG CYS 22 H CYS 22 1_555 E SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 E SG CYS 149 H CYS 140 1_555 E SG CYS 205 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf21 F SG CYS 23 L CYS 23 1_555 F SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf22 F SG CYS 133 L CYS 134 1_555 F SG CYS 193 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 45 A ASN 88 1_555 G C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 A ND2 ASN 118 A ASN 234 1_555 H C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 125 A ASN 241 1_555 I C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 A ND2 ASN 146 A ASN 262 1_555 J C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 A ND2 ASN 160 A ASN 276 1_555 K C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 A ND2 ASN 173 A ASN 289 1_555 L C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 A ND2 ASN 179 A ASN 295 1_555 M C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 A ND2 ASN 202 A ASN 334 1_555 N C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale9 A ND2 ASN 223 A ASN 355 1_555 O C1 NAG . A NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 A ND2 ASN 253 A ASN 386 1_555 P C1 NAG . A NAG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale11 A ND2 ASN 259 A ASN 392 1_555 Q C1 NAG . A NAG 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 A ND2 ASN 272 A ASN 411 1_555 R C1 NAG . A NAG 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 A ND2 ASN 309 A ASN 448 1_555 S C1 NAG . A NAG 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale14 A ND2 ASN 322 A ASN 461 1_555 T C1 NAG . A NAG 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale15 D ND2 ASN 118 G ASN 234 1_555 V C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale16 D ND2 ASN 125 G ASN 241 1_555 W C1 NAG . G NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale17 D ND2 ASN 146 G ASN 262 1_555 X C1 NAG . G NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale18 D ND2 ASN 160 G ASN 276 1_555 Y C1 NAG . G NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale19 D ND2 ASN 173 G ASN 289 1_555 Z C1 NAG . G NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale20 D ND2 ASN 179 G ASN 295 1_555 AA C1 NAG . G NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale21 D ND2 ASN 202 G ASN 334 1_555 BA C1 NAG . G NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale22 D ND2 ASN 223 G ASN 355 1_555 CA C1 NAG . G NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale23 D ND2 ASN 253 G ASN 386 1_555 DA C1 NAG . G NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale24 D ND2 ASN 259 G ASN 392 1_555 EA C1 NAG . G NAG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale25 D ND2 ASN 272 G ASN 411 1_555 FA C1 NAG . G NAG 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale26 D ND2 ASN 309 G ASN 448 1_555 GA C1 NAG . G NAG 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale27 D ND2 ASN 322 G ASN 461 1_555 HA C1 NAG . G NAG 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 290 n n P O2 PO4 sing 291 n n P O3 PO4 sing 292 n n P O4 PO4 sing 293 n n # _atom_sites.entry_id 5F9W _atom_sites.fract_transf_matrix[1][1] 0.008102 _atom_sites.fract_transf_matrix[1][2] 0.004678 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 501 588 NAG NAG . H 4 NAG A 1 502 734 NAG NAG . I 4 NAG A 1 503 741 NAG NAG . J 4 NAG A 1 504 762 NAG NAG . K 4 NAG A 1 505 776 NAG NAG . L 4 NAG A 1 506 789 NAG NAG . M 4 NAG A 1 507 795 NAG NAG . N 4 NAG A 1 508 834 NAG NAG . O 4 NAG A 1 509 855 NAG NAG . P 4 NAG A 1 510 886 NAG NAG . Q 4 NAG A 1 511 892 NAG NAG . R 4 NAG A 1 512 911 NAG NAG . S 4 NAG A 1 513 948 NAG NAG . T 4 NAG A 1 514 961 NAG NAG . U 5 PO4 B 1 301 1 PO4 PO4 . V 4 NAG G 1 501 734 NAG NAG . W 4 NAG G 1 502 741 NAG NAG . X 4 NAG G 1 503 762 NAG NAG . Y 4 NAG G 1 504 776 NAG NAG . Z 4 NAG G 1 505 789 NAG NAG . AA 4 NAG G 1 506 795 NAG NAG . BA 4 NAG G 1 507 834 NAG NAG . CA 4 NAG G 1 508 855 NAG NAG . DA 4 NAG G 1 509 886 NAG NAG . EA 4 NAG G 1 510 892 NAG NAG . FA 4 NAG G 1 511 911 NAG NAG . GA 4 NAG G 1 512 948 NAG NAG . HA 4 NAG G 1 513 961 NAG NAG . IA 5 PO4 H 1 301 3 PO4 PO4 . JA 5 PO4 H 1 302 2 PO4 PO4 . KA 6 HOH A 1 601 118 HOH HOH . KA 6 HOH A 2 602 99 HOH HOH . KA 6 HOH A 3 603 109 HOH HOH . KA 6 HOH A 4 604 111 HOH HOH . KA 6 HOH A 5 605 115 HOH HOH . KA 6 HOH A 6 606 100 HOH HOH . KA 6 HOH A 7 607 110 HOH HOH . KA 6 HOH A 8 608 106 HOH HOH . KA 6 HOH A 9 609 121 HOH HOH . KA 6 HOH A 10 610 44 HOH HOH . KA 6 HOH A 11 611 65 HOH HOH . KA 6 HOH A 12 612 47 HOH HOH . KA 6 HOH A 13 613 77 HOH HOH . KA 6 HOH A 14 614 19 HOH HOH . KA 6 HOH A 15 615 24 HOH HOH . KA 6 HOH A 16 616 124 HOH HOH . KA 6 HOH A 17 617 56 HOH HOH . LA 6 HOH B 1 401 76 HOH HOH . LA 6 HOH B 2 402 117 HOH HOH . LA 6 HOH B 3 403 48 HOH HOH . LA 6 HOH B 4 404 108 HOH HOH . LA 6 HOH B 5 405 7 HOH HOH . LA 6 HOH B 6 406 61 HOH HOH . LA 6 HOH B 7 407 63 HOH HOH . LA 6 HOH B 8 408 91 HOH HOH . MA 6 HOH C 1 301 82 HOH HOH . MA 6 HOH C 2 302 41 HOH HOH . MA 6 HOH C 3 303 6 HOH HOH . MA 6 HOH C 4 304 119 HOH HOH . MA 6 HOH C 5 305 38 HOH HOH . MA 6 HOH C 6 306 51 HOH HOH . MA 6 HOH C 7 307 4 HOH HOH . MA 6 HOH C 8 308 104 HOH HOH . MA 6 HOH C 9 309 3 HOH HOH . MA 6 HOH C 10 310 62 HOH HOH . MA 6 HOH C 11 311 103 HOH HOH . MA 6 HOH C 12 312 105 HOH HOH . MA 6 HOH C 13 313 16 HOH HOH . MA 6 HOH C 14 314 79 HOH HOH . MA 6 HOH C 15 315 39 HOH HOH . MA 6 HOH C 16 316 89 HOH HOH . MA 6 HOH C 17 317 73 HOH HOH . MA 6 HOH C 18 318 68 HOH HOH . NA 6 HOH G 1 601 114 HOH HOH . NA 6 HOH G 2 602 112 HOH HOH . NA 6 HOH G 3 603 116 HOH HOH . NA 6 HOH G 4 604 69 HOH HOH . NA 6 HOH G 5 605 123 HOH HOH . NA 6 HOH G 6 606 10 HOH HOH . NA 6 HOH G 7 607 36 HOH HOH . NA 6 HOH G 8 608 92 HOH HOH . NA 6 HOH G 9 609 75 HOH HOH . NA 6 HOH G 10 610 78 HOH HOH . NA 6 HOH G 11 611 60 HOH HOH . NA 6 HOH G 12 612 40 HOH HOH . NA 6 HOH G 13 613 46 HOH HOH . NA 6 HOH G 14 614 23 HOH HOH . OA 6 HOH H 1 401 2 HOH HOH . OA 6 HOH H 2 402 20 HOH HOH . OA 6 HOH H 3 403 95 HOH HOH . OA 6 HOH H 4 404 54 HOH HOH . OA 6 HOH H 5 405 43 HOH HOH . OA 6 HOH H 6 406 83 HOH HOH . PA 6 HOH L 1 301 52 HOH HOH . PA 6 HOH L 2 302 113 HOH HOH . PA 6 HOH L 3 303 5 HOH HOH . PA 6 HOH L 4 304 14 HOH HOH . PA 6 HOH L 5 305 120 HOH HOH . PA 6 HOH L 6 306 101 HOH HOH . PA 6 HOH L 7 307 98 HOH HOH . PA 6 HOH L 8 308 122 HOH HOH . PA 6 HOH L 9 309 9 HOH HOH . PA 6 HOH L 10 310 37 HOH HOH . PA 6 HOH L 11 311 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . IA 5 167.107 -39.489 -20.909 1 193.94 ? P PO4 301 H 1 HETATM 2 O O1 PO4 . . . IA 5 168.348 -39.08 -21.666 1 174.99 ? O1 PO4 301 H 1 HETATM 3 O O2 PO4 . . . IA 5 165.893 -38.871 -21.562 1 201.99 ? O2 PO4 301 H 1 HETATM 4 O O3 PO4 . . . IA 5 166.98 -40.993 -20.931 1 204.05 ? O3 PO4 301 H 1 HETATM 5 O O4 PO4 . . . IA 5 167.207 -39.013 -19.48 1 192.92 ? O4 PO4 301 H 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #