data_5F9Y
#
_model_server_result.job_id            g3Z3TZ0fjJ1tge4heRnB8w 
_model_server_result.datetime_utc      '2024-11-05 00:19:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5f9y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":700}' 
#
_entry.id    5F9Y 
#
_exptl.entry_id    5F9Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              115.13 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PROLINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5F9Y 
_cell.length_a            90.87 
_cell.length_b            110.14 
_cell.length_c            127.71 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5F9Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
A,B,C,D,E,F,G,H,I,J,K 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 444 A CYS 621 1_555 E ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc2 A SG CYS 449 A CYS 626 1_555 E ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc3 A SG CYS 494 A CYS 671 1_555 E ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc4 B SG CYS 444 B CYS 621 1_555 H ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc5 B SG CYS 449 B CYS 626 1_555 H ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc6 B SG CYS 494 B CYS 671 1_555 H ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
#
_chem_comp.formula           'C5 H9 N O2' 
_chem_comp.formula_weight    115.13 
_chem_comp.id                PRO 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              PROLINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA PRO sing 303 n n 
N CD PRO sing 304 n n 
N H PRO sing 305 n n 
CA C PRO sing 306 n n 
CA CB PRO sing 307 n n 
CA HA PRO sing 308 n n 
C O PRO doub 309 n n 
C OXT PRO sing 310 n n 
CB CG PRO sing 311 n n 
CB HB2 PRO sing 312 n n 
CB HB3 PRO sing 313 n n 
CG CD PRO sing 314 n n 
CG HG2 PRO sing 315 n n 
CG HG3 PRO sing 316 n n 
CD HD2 PRO sing 317 n n 
CD HD3 PRO sing 318 n n 
OXT HXT PRO sing 319 n n 
#
_atom_sites.entry_id                     5F9Y 
_atom_sites.fract_transf_matrix[1][1]    0.011005 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009079 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00783 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PRO A 1 700 700 PRO PRO . 
D 3 AMP A 1 701 701 AMP AMP . 
E 4 ZN A 1 702 702 ZN ZN . 
F 2 PRO B 1 700 700 PRO PRO . 
G 3 AMP B 1 701 701 AMP AMP . 
H 4 ZN B 1 702 702 ZN ZN . 
I 5 PO4 B 1 703 703 PO4 PO4 . 
J 6 HOH A 1 801 24 HOH HOH . 
J 6 HOH A 2 802 7 HOH HOH . 
J 6 HOH A 3 803 21 HOH HOH . 
J 6 HOH A 4 804 14 HOH HOH . 
J 6 HOH A 5 805 22 HOH HOH . 
J 6 HOH A 6 806 23 HOH HOH . 
J 6 HOH A 7 807 4 HOH HOH . 
J 6 HOH A 8 808 17 HOH HOH . 
J 6 HOH A 9 809 15 HOH HOH . 
J 6 HOH A 10 810 8 HOH HOH . 
J 6 HOH A 11 811 16 HOH HOH . 
J 6 HOH A 12 812 18 HOH HOH . 
J 6 HOH A 13 813 19 HOH HOH . 
J 6 HOH A 14 814 3 HOH HOH . 
J 6 HOH A 15 815 13 HOH HOH . 
J 6 HOH A 16 816 1 HOH HOH . 
J 6 HOH A 17 817 20 HOH HOH . 
J 6 HOH A 18 818 10 HOH HOH . 
J 6 HOH A 19 819 6 HOH HOH . 
J 6 HOH A 20 820 5 HOH HOH . 
J 6 HOH A 21 821 11 HOH HOH . 
J 6 HOH A 22 822 9 HOH HOH . 
K 6 HOH B 1 801 28 HOH HOH . 
K 6 HOH B 2 802 35 HOH HOH . 
K 6 HOH B 3 803 31 HOH HOH . 
K 6 HOH B 4 804 25 HOH HOH . 
K 6 HOH B 5 805 34 HOH HOH . 
K 6 HOH B 6 806 12 HOH HOH . 
K 6 HOH B 7 807 33 HOH HOH . 
K 6 HOH B 8 808 29 HOH HOH . 
K 6 HOH B 9 809 27 HOH HOH . 
K 6 HOH B 10 810 26 HOH HOH . 
K 6 HOH B 11 811 32 HOH HOH . 
K 6 HOH B 12 812 30 HOH HOH . 
K 6 HOH B 13 813 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N PRO . . . C 2 16.562 18.594 8.982 1 57.09 ? N PRO 700 A 1 
HETATM 2 C CA PRO . . . C 2 16.406 19.945 9.531 1 57.2 ? CA PRO 700 A 1 
HETATM 3 C C PRO . . . C 2 17.72 20.519 10.046 1 55.6 ? C PRO 700 A 1 
HETATM 4 O O PRO . . . C 2 18.777 19.911 9.885 1 55.63 ? O PRO 700 A 1 
HETATM 5 C CB PRO . . . C 2 15.407 19.748 10.678 1 51.44 ? CB PRO 700 A 1 
HETATM 6 C CG PRO . . . C 2 15.491 18.301 11.019 1 47.01 ? CG PRO 700 A 1 
HETATM 7 C CD PRO . . . C 2 15.772 17.601 9.728 1 52.59 ? CD PRO 700 A 1 
HETATM 8 O OXT PRO . . . C 2 17.753 21.604 10.627 1 55.51 ? OXT PRO 700 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           8 
#