data_5F9Y
#
_model_server_result.job_id            qwfvrDYYccEA0pbkUZ6JXQ 
_model_server_result.datetime_utc      '2024-11-05 00:19:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5f9y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    5F9Y 
#
_exptl.entry_id    5F9Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5F9Y 
_cell.length_a            90.87 
_cell.length_b            110.14 
_cell.length_c            127.71 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5F9Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
A,B,C,D,E,F,G,H,I,J,K 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 444 A CYS 621 1_555 E ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc2 A SG CYS 449 A CYS 626 1_555 E ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc3 A SG CYS 494 A CYS 671 1_555 E ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc4 B SG CYS 444 B CYS 621 1_555 H ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc5 B SG CYS 449 B CYS 626 1_555 H ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc6 B SG CYS 494 B CYS 671 1_555 H ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     5F9Y 
_atom_sites.fract_transf_matrix[1][1]    0.011005 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009079 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00783 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PRO A 1 700 700 PRO PRO . 
D 3 AMP A 1 701 701 AMP AMP . 
E 4 ZN A 1 702 702 ZN ZN . 
F 2 PRO B 1 700 700 PRO PRO . 
G 3 AMP B 1 701 701 AMP AMP . 
H 4 ZN B 1 702 702 ZN ZN . 
I 5 PO4 B 1 703 703 PO4 PO4 . 
J 6 HOH A 1 801 24 HOH HOH . 
J 6 HOH A 2 802 7 HOH HOH . 
J 6 HOH A 3 803 21 HOH HOH . 
J 6 HOH A 4 804 14 HOH HOH . 
J 6 HOH A 5 805 22 HOH HOH . 
J 6 HOH A 6 806 23 HOH HOH . 
J 6 HOH A 7 807 4 HOH HOH . 
J 6 HOH A 8 808 17 HOH HOH . 
J 6 HOH A 9 809 15 HOH HOH . 
J 6 HOH A 10 810 8 HOH HOH . 
J 6 HOH A 11 811 16 HOH HOH . 
J 6 HOH A 12 812 18 HOH HOH . 
J 6 HOH A 13 813 19 HOH HOH . 
J 6 HOH A 14 814 3 HOH HOH . 
J 6 HOH A 15 815 13 HOH HOH . 
J 6 HOH A 16 816 1 HOH HOH . 
J 6 HOH A 17 817 20 HOH HOH . 
J 6 HOH A 18 818 10 HOH HOH . 
J 6 HOH A 19 819 6 HOH HOH . 
J 6 HOH A 20 820 5 HOH HOH . 
J 6 HOH A 21 821 11 HOH HOH . 
J 6 HOH A 22 822 9 HOH HOH . 
K 6 HOH B 1 801 28 HOH HOH . 
K 6 HOH B 2 802 35 HOH HOH . 
K 6 HOH B 3 803 31 HOH HOH . 
K 6 HOH B 4 804 25 HOH HOH . 
K 6 HOH B 5 805 34 HOH HOH . 
K 6 HOH B 6 806 12 HOH HOH . 
K 6 HOH B 7 807 33 HOH HOH . 
K 6 HOH B 8 808 29 HOH HOH . 
K 6 HOH B 9 809 27 HOH HOH . 
K 6 HOH B 10 810 26 HOH HOH . 
K 6 HOH B 11 811 32 HOH HOH . 
K 6 HOH B 12 812 30 HOH HOH . 
K 6 HOH B 13 813 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . D 3 20.592 24.417 12.061 1 111.56 ? P AMP 701 A 1 
HETATM 2 O O1P AMP . . . D 3 19.909 25.46 11.211 1 111.65 ? O1P AMP 701 A 1 
HETATM 3 O O2P AMP . . . D 3 21.294 23.337 11.271 1 111.97 ? O2P AMP 701 A 1 
HETATM 4 O O3P AMP . . . D 3 21.407 24.972 13.206 1 111.49 ? O3P AMP 701 A 1 
HETATM 5 O O5' AMP . . . D 3 19.388 23.647 12.767 1 110.38 ? O5' AMP 701 A 1 
HETATM 6 C C5' AMP . . . D 3 19.577 22.35 13.322 1 108.26 ? C5' AMP 701 A 1 
HETATM 7 C C4' AMP . . . D 3 19.064 22.258 14.739 1 106.18 ? C4' AMP 701 A 1 
HETATM 8 O O4' AMP . . . D 3 20.037 21.537 15.538 1 105.04 ? O4' AMP 701 A 1 
HETATM 9 C C3' AMP . . . D 3 18.838 23.588 15.447 1 105.15 ? C3' AMP 701 A 1 
HETATM 10 O O3' AMP . . . D 3 17.781 23.448 16.396 1 104.32 ? O3' AMP 701 A 1 
HETATM 11 C C2' AMP . . . D 3 20.157 23.806 16.181 1 104.58 ? C2' AMP 701 A 1 
HETATM 12 O O2' AMP . . . D 3 20.064 24.64 17.316 1 104.88 ? O2' AMP 701 A 1 
HETATM 13 C C1' AMP . . . D 3 20.55 22.376 16.558 1 103.57 ? C1' AMP 701 A 1 
HETATM 14 N N9 AMP . . . D 3 21.997 22.161 16.619 1 101.02 ? N9 AMP 701 A 1 
HETATM 15 C C8 AMP . . . D 3 22.852 22.431 15.614 1 99.59 ? C8 AMP 701 A 1 
HETATM 16 N N7 AMP . . . D 3 24.128 22.129 15.957 1 99.07 ? N7 AMP 701 A 1 
HETATM 17 C C5 AMP . . . D 3 24.102 21.651 17.214 1 98.85 ? C5 AMP 701 A 1 
HETATM 18 C C6 AMP . . . D 3 25.107 21.148 18.177 1 97.33 ? C6 AMP 701 A 1 
HETATM 19 N N6 AMP . . . D 3 26.419 21.099 17.846 1 97.32 ? N6 AMP 701 A 1 
HETATM 20 N N1 AMP . . . D 3 24.669 20.743 19.39 1 96.65 ? N1 AMP 701 A 1 
HETATM 21 C C2 AMP . . . D 3 23.365 20.791 19.721 1 97 ? C2 AMP 701 A 1 
HETATM 22 N N3 AMP . . . D 3 22.399 21.236 18.897 1 97.99 ? N3 AMP 701 A 1 
HETATM 23 C C4 AMP . . . D 3 22.696 21.676 17.65 1 99.46 ? C4 AMP 701 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#