data_5FA4 # _model_server_result.job_id kfnWDI4a3vHhfvd5PCHbBQ _model_server_result.datetime_utc '2025-07-16 15:28:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fa4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 5FA4 # _exptl.entry_id 5FA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.42 _cell.angle_gamma 90 _cell.entry_id 5FA4 _cell.length_a 56.525 _cell.length_b 79.421 _cell.length_c 58.513 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5FA4 _atom_sites.fract_transf_matrix[1][1] 0.017691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008788 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 601 601 GOL GOL . E 5 NA B 1 101 1 NA NA . F 4 GOL C 1 101 602 GOL GOL . G 6 HOH A 1 701 53 HOH HOH . G 6 HOH A 2 702 58 HOH HOH . G 6 HOH A 3 703 10 HOH HOH . G 6 HOH A 4 704 80 HOH HOH . G 6 HOH A 5 705 48 HOH HOH . G 6 HOH A 6 706 2 HOH HOH . G 6 HOH A 7 707 43 HOH HOH . G 6 HOH A 8 708 42 HOH HOH . G 6 HOH A 9 709 45 HOH HOH . G 6 HOH A 10 710 35 HOH HOH . G 6 HOH A 11 711 73 HOH HOH . G 6 HOH A 12 712 37 HOH HOH . G 6 HOH A 13 713 6 HOH HOH . G 6 HOH A 14 714 56 HOH HOH . G 6 HOH A 15 715 78 HOH HOH . G 6 HOH A 16 716 49 HOH HOH . G 6 HOH A 17 717 81 HOH HOH . G 6 HOH A 18 718 50 HOH HOH . G 6 HOH A 19 719 15 HOH HOH . G 6 HOH A 20 720 62 HOH HOH . G 6 HOH A 21 721 82 HOH HOH . G 6 HOH A 22 722 76 HOH HOH . G 6 HOH A 23 723 47 HOH HOH . G 6 HOH A 24 724 46 HOH HOH . G 6 HOH A 25 725 67 HOH HOH . G 6 HOH A 26 726 33 HOH HOH . G 6 HOH A 27 727 27 HOH HOH . G 6 HOH A 28 728 51 HOH HOH . G 6 HOH A 29 729 61 HOH HOH . G 6 HOH A 30 730 14 HOH HOH . G 6 HOH A 31 731 63 HOH HOH . G 6 HOH A 32 732 28 HOH HOH . G 6 HOH A 33 733 66 HOH HOH . G 6 HOH A 34 734 44 HOH HOH . G 6 HOH A 35 735 25 HOH HOH . G 6 HOH A 36 736 30 HOH HOH . G 6 HOH A 37 737 31 HOH HOH . G 6 HOH A 38 738 13 HOH HOH . G 6 HOH A 39 739 69 HOH HOH . G 6 HOH A 40 740 21 HOH HOH . G 6 HOH A 41 741 38 HOH HOH . G 6 HOH A 42 742 68 HOH HOH . G 6 HOH A 43 743 5 HOH HOH . G 6 HOH A 44 744 19 HOH HOH . G 6 HOH A 45 745 4 HOH HOH . G 6 HOH A 46 746 65 HOH HOH . G 6 HOH A 47 747 18 HOH HOH . G 6 HOH A 48 748 64 HOH HOH . G 6 HOH A 49 749 20 HOH HOH . G 6 HOH A 50 750 32 HOH HOH . G 6 HOH A 51 751 34 HOH HOH . G 6 HOH A 52 752 39 HOH HOH . G 6 HOH A 53 753 36 HOH HOH . G 6 HOH A 54 754 17 HOH HOH . G 6 HOH A 55 755 79 HOH HOH . G 6 HOH A 56 756 70 HOH HOH . G 6 HOH A 57 757 72 HOH HOH . H 6 HOH B 1 201 16 HOH HOH . H 6 HOH B 2 202 41 HOH HOH . H 6 HOH B 3 203 8 HOH HOH . H 6 HOH B 4 204 54 HOH HOH . H 6 HOH B 5 205 7 HOH HOH . H 6 HOH B 6 206 1 HOH HOH . H 6 HOH B 7 207 60 HOH HOH . H 6 HOH B 8 208 52 HOH HOH . H 6 HOH B 9 209 59 HOH HOH . H 6 HOH B 10 210 23 HOH HOH . H 6 HOH B 11 211 83 HOH HOH . H 6 HOH B 12 212 26 HOH HOH . H 6 HOH B 13 213 9 HOH HOH . H 6 HOH B 14 214 75 HOH HOH . H 6 HOH B 15 215 3 HOH HOH . H 6 HOH B 16 216 74 HOH HOH . H 6 HOH B 17 217 22 HOH HOH . H 6 HOH B 18 218 11 HOH HOH . H 6 HOH B 19 219 29 HOH HOH . H 6 HOH B 20 220 12 HOH HOH . H 6 HOH B 21 221 71 HOH HOH . H 6 HOH B 22 222 24 HOH HOH . H 6 HOH B 23 223 40 HOH HOH . H 6 HOH B 24 224 55 HOH HOH . I 6 HOH C 1 201 77 HOH HOH . I 6 HOH C 2 202 57 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 71.573 _atom_site.Cartn_y -14.041 _atom_site.Cartn_z 1.742 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #