data_5FA5 # _model_server_result.job_id u7FRaNjAHZEvEU7udsPsIg _model_server_result.datetime_utc '2024-11-04 22:45:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fa5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 5FA5 # _exptl.entry_id 5FA5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.334 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-DEOXY-5'-METHYLTHIOADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FA5 _cell.length_a 102.05 _cell.length_b 137.85 _cell.length_c 178.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FA5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 PISA trimeric 3 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2,3,4 A,B,C,D,E,F 2 1,2 A,B,C,D,E,F 3 1,4 A,B,C,D,E,F 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -137.85 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -137.85 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N5 O3 S' _chem_comp.formula_weight 297.334 _chem_comp.id MTA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-DEOXY-5'-METHYLTHIOADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CS S5' MTA sing 237 n n CS HCS1 MTA sing 238 n n CS HCS2 MTA sing 239 n n CS HCS3 MTA sing 240 n n S5' C5' MTA sing 241 n n C5' C4' MTA sing 242 n n C5' "H5'1" MTA sing 243 n n C5' "H5'2" MTA sing 244 n n C4' O4' MTA sing 245 n n C4' C3' MTA sing 246 n n C4' H4' MTA sing 247 n n O4' C1' MTA sing 248 n n C2' O2' MTA sing 249 n n C2' C3' MTA sing 250 n n C2' C1' MTA sing 251 n n C2' H2' MTA sing 252 n n O2' HO2' MTA sing 253 n n C3' O3' MTA sing 254 n n C3' H3' MTA sing 255 n n O3' H3T MTA sing 256 n n C1' N9 MTA sing 257 n n C1' H1' MTA sing 258 n n N9 C8 MTA sing 259 n y N9 C4 MTA sing 260 n y C8 N7 MTA doub 261 n y C8 H8 MTA sing 262 n n N7 C5 MTA sing 263 n y C5 C6 MTA sing 264 n y C5 C4 MTA doub 265 n y C6 N6 MTA sing 266 n n C6 N1 MTA doub 267 n y N6 H61 MTA sing 268 n n N6 H62 MTA sing 269 n n N1 C2 MTA sing 270 n y C2 N3 MTA doub 271 n y C2 H2 MTA sing 272 n n N3 C4 MTA sing 273 n y # _atom_sites.entry_id 5FA5 _atom_sites.fract_transf_matrix[1][1] 0.009799 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005604 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MTA A 1 701 1 MTA LI1 . E 5 HOH A 1 801 128 HOH HOH . E 5 HOH A 2 802 20 HOH HOH . E 5 HOH A 3 803 83 HOH HOH . E 5 HOH A 4 804 119 HOH HOH . E 5 HOH A 5 805 39 HOH HOH . E 5 HOH A 6 806 16 HOH HOH . E 5 HOH A 7 807 76 HOH HOH . E 5 HOH A 8 808 15 HOH HOH . E 5 HOH A 9 809 79 HOH HOH . E 5 HOH A 10 810 86 HOH HOH . E 5 HOH A 11 811 47 HOH HOH . E 5 HOH A 12 812 19 HOH HOH . E 5 HOH A 13 813 10 HOH HOH . E 5 HOH A 14 814 123 HOH HOH . E 5 HOH A 15 815 77 HOH HOH . E 5 HOH A 16 816 8 HOH HOH . E 5 HOH A 17 817 130 HOH HOH . E 5 HOH A 18 818 84 HOH HOH . E 5 HOH A 19 819 94 HOH HOH . E 5 HOH A 20 820 90 HOH HOH . E 5 HOH A 21 821 106 HOH HOH . E 5 HOH A 22 822 25 HOH HOH . E 5 HOH A 23 823 89 HOH HOH . E 5 HOH A 24 824 29 HOH HOH . E 5 HOH A 25 825 24 HOH HOH . E 5 HOH A 26 826 37 HOH HOH . E 5 HOH A 27 827 18 HOH HOH . E 5 HOH A 28 828 1 HOH HOH . E 5 HOH A 29 829 21 HOH HOH . E 5 HOH A 30 830 27 HOH HOH . E 5 HOH A 31 831 152 HOH HOH . E 5 HOH A 32 832 122 HOH HOH . E 5 HOH A 33 833 56 HOH HOH . E 5 HOH A 34 834 124 HOH HOH . E 5 HOH A 35 835 91 HOH HOH . E 5 HOH A 36 836 85 HOH HOH . E 5 HOH A 37 837 75 HOH HOH . E 5 HOH A 38 838 43 HOH HOH . E 5 HOH A 39 839 138 HOH HOH . E 5 HOH A 40 840 52 HOH HOH . E 5 HOH A 41 841 3 HOH HOH . E 5 HOH A 42 842 93 HOH HOH . E 5 HOH A 43 843 11 HOH HOH . E 5 HOH A 44 844 42 HOH HOH . E 5 HOH A 45 845 31 HOH HOH . E 5 HOH A 46 846 4 HOH HOH . E 5 HOH A 47 847 59 HOH HOH . E 5 HOH A 48 848 97 HOH HOH . E 5 HOH A 49 849 53 HOH HOH . E 5 HOH A 50 850 17 HOH HOH . E 5 HOH A 51 851 45 HOH HOH . E 5 HOH A 52 852 48 HOH HOH . E 5 HOH A 53 853 36 HOH HOH . E 5 HOH A 54 854 146 HOH HOH . E 5 HOH A 55 855 44 HOH HOH . E 5 HOH A 56 856 88 HOH HOH . E 5 HOH A 57 857 126 HOH HOH . E 5 HOH A 58 858 136 HOH HOH . E 5 HOH A 59 859 13 HOH HOH . E 5 HOH A 60 860 12 HOH HOH . E 5 HOH A 61 861 81 HOH HOH . E 5 HOH A 62 862 7 HOH HOH . E 5 HOH A 63 863 5 HOH HOH . E 5 HOH A 64 864 121 HOH HOH . E 5 HOH A 65 865 95 HOH HOH . E 5 HOH A 66 866 32 HOH HOH . E 5 HOH A 67 867 73 HOH HOH . E 5 HOH A 68 868 58 HOH HOH . E 5 HOH A 69 869 159 HOH HOH . E 5 HOH A 70 870 78 HOH HOH . E 5 HOH A 71 871 156 HOH HOH . E 5 HOH A 72 872 57 HOH HOH . E 5 HOH A 73 873 74 HOH HOH . E 5 HOH A 74 874 99 HOH HOH . E 5 HOH A 75 875 67 HOH HOH . E 5 HOH A 76 876 149 HOH HOH . E 5 HOH A 77 877 60 HOH HOH . E 5 HOH A 78 878 115 HOH HOH . E 5 HOH A 79 879 110 HOH HOH . E 5 HOH A 80 880 28 HOH HOH . E 5 HOH A 81 881 142 HOH HOH . E 5 HOH A 82 882 104 HOH HOH . E 5 HOH A 83 883 72 HOH HOH . E 5 HOH A 84 884 92 HOH HOH . E 5 HOH A 85 885 71 HOH HOH . E 5 HOH A 86 886 49 HOH HOH . E 5 HOH A 87 887 9 HOH HOH . E 5 HOH A 88 888 38 HOH HOH . E 5 HOH A 89 889 148 HOH HOH . E 5 HOH A 90 890 66 HOH HOH . E 5 HOH A 91 891 70 HOH HOH . E 5 HOH A 92 892 141 HOH HOH . E 5 HOH A 93 893 107 HOH HOH . E 5 HOH A 94 894 33 HOH HOH . E 5 HOH A 95 895 50 HOH HOH . E 5 HOH A 96 896 63 HOH HOH . E 5 HOH A 97 897 140 HOH HOH . E 5 HOH A 98 898 158 HOH HOH . E 5 HOH A 99 899 6 HOH HOH . E 5 HOH A 100 900 51 HOH HOH . E 5 HOH A 101 901 46 HOH HOH . E 5 HOH A 102 902 117 HOH HOH . E 5 HOH A 103 903 96 HOH HOH . E 5 HOH A 104 904 144 HOH HOH . E 5 HOH A 105 905 61 HOH HOH . E 5 HOH A 106 906 100 HOH HOH . E 5 HOH A 107 907 155 HOH HOH . E 5 HOH A 108 908 127 HOH HOH . E 5 HOH A 109 909 80 HOH HOH . E 5 HOH A 110 910 120 HOH HOH . E 5 HOH A 111 911 14 HOH HOH . E 5 HOH A 112 912 108 HOH HOH . E 5 HOH A 113 913 65 HOH HOH . E 5 HOH A 114 914 105 HOH HOH . E 5 HOH A 115 915 41 HOH HOH . E 5 HOH A 116 916 87 HOH HOH . E 5 HOH A 117 917 145 HOH HOH . E 5 HOH A 118 918 30 HOH HOH . E 5 HOH A 119 919 55 HOH HOH . E 5 HOH A 120 920 116 HOH HOH . E 5 HOH A 121 921 62 HOH HOH . E 5 HOH A 122 922 147 HOH HOH . E 5 HOH A 123 923 113 HOH HOH . E 5 HOH A 124 924 132 HOH HOH . E 5 HOH A 125 925 131 HOH HOH . E 5 HOH A 126 926 153 HOH HOH . E 5 HOH A 127 927 168 HOH HOH . E 5 HOH A 128 928 98 HOH HOH . E 5 HOH A 129 929 143 HOH HOH . E 5 HOH A 130 930 111 HOH HOH . E 5 HOH A 131 931 166 HOH HOH . E 5 HOH A 132 932 167 HOH HOH . E 5 HOH A 133 933 2 HOH HOH . E 5 HOH A 134 934 40 HOH HOH . E 5 HOH A 135 935 82 HOH HOH . E 5 HOH A 136 936 54 HOH HOH . E 5 HOH A 137 937 118 HOH HOH . E 5 HOH A 138 938 114 HOH HOH . E 5 HOH A 139 939 150 HOH HOH . E 5 HOH A 140 940 134 HOH HOH . E 5 HOH A 141 941 69 HOH HOH . E 5 HOH A 142 942 133 HOH HOH . E 5 HOH A 143 943 135 HOH HOH . E 5 HOH A 144 944 157 HOH HOH . E 5 HOH A 145 945 154 HOH HOH . F 5 HOH B 1 401 22 HOH HOH . F 5 HOH B 2 402 163 HOH HOH . F 5 HOH B 3 403 112 HOH HOH . F 5 HOH B 4 404 64 HOH HOH . F 5 HOH B 5 405 160 HOH HOH . F 5 HOH B 6 406 109 HOH HOH . F 5 HOH B 7 407 34 HOH HOH . F 5 HOH B 8 408 23 HOH HOH . F 5 HOH B 9 409 151 HOH HOH . F 5 HOH B 10 410 161 HOH HOH . F 5 HOH B 11 411 35 HOH HOH . F 5 HOH B 12 412 101 HOH HOH . F 5 HOH B 13 413 125 HOH HOH . F 5 HOH B 14 414 102 HOH HOH . F 5 HOH B 15 415 68 HOH HOH . F 5 HOH B 16 416 26 HOH HOH . F 5 HOH B 17 417 164 HOH HOH . F 5 HOH B 18 418 103 HOH HOH . F 5 HOH B 19 419 129 HOH HOH . F 5 HOH B 20 420 137 HOH HOH . F 5 HOH B 21 421 165 HOH HOH . F 5 HOH B 22 422 162 HOH HOH . F 5 HOH B 23 423 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CS MTA . . . D 4 -21.487 -98.716 -6.759 1 48.53 ? CS MTA 701 A 1 HETATM 2 S S5' MTA . . . D 4 -19.956 -97.764 -6.535 1 52.02 ? S5' MTA 701 A 1 HETATM 3 C C5' MTA . . . D 4 -18.698 -99.032 -6.199 1 49.02 ? C5' MTA 701 A 1 HETATM 4 C C4' MTA . . . D 4 -18.954 -99.894 -4.93 1 48.28 ? C4' MTA 701 A 1 HETATM 5 O O4' MTA . . . D 4 -17.934 -100.889 -4.818 1 47.31 ? O4' MTA 701 A 1 HETATM 6 C C2' MTA . . . D 4 -17.533 -99.405 -3.045 1 42.88 ? C2' MTA 701 A 1 HETATM 7 O O2' MTA . . . D 4 -17.408 -99.342 -1.63 1 41.75 ? O2' MTA 701 A 1 HETATM 8 C C3' MTA . . . D 4 -18.938 -99.131 -3.593 1 45.23 ? C3' MTA 701 A 1 HETATM 9 O O3' MTA . . . D 4 -19.956 -99.557 -2.704 1 43.96 ? O3' MTA 701 A 1 HETATM 10 C C1' MTA . . . D 4 -17.318 -100.824 -3.574 1 43.73 ? C1' MTA 701 A 1 HETATM 11 N N9 MTA . . . D 4 -15.881 -101.148 -3.747 1 38.28 ? N9 MTA 701 A 1 HETATM 12 C C8 MTA . . . D 4 -14.933 -100.464 -4.451 1 41.41 ? C8 MTA 701 A 1 HETATM 13 N N7 MTA . . . D 4 -13.75 -101.029 -4.463 1 44.59 ? N7 MTA 701 A 1 HETATM 14 C C5 MTA . . . D 4 -13.917 -102.199 -3.733 1 39.22 ? C5 MTA 701 A 1 HETATM 15 C C6 MTA . . . D 4 -13.053 -103.262 -3.36 1 40.93 ? C6 MTA 701 A 1 HETATM 16 N N6 MTA . . . D 4 -11.757 -103.295 -3.721 1 42.41 ? N6 MTA 701 A 1 HETATM 17 N N1 MTA . . . D 4 -13.567 -104.301 -2.65 1 39.67 ? N1 MTA 701 A 1 HETATM 18 C C2 MTA . . . D 4 -14.876 -104.292 -2.317 1 41.33 ? C2 MTA 701 A 1 HETATM 19 N N3 MTA . . . D 4 -15.805 -103.345 -2.59 1 38.24 ? N3 MTA 701 A 1 HETATM 20 C C4 MTA . . . D 4 -15.274 -102.324 -3.341 1 36.03 ? C4 MTA 701 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #