data_5FA6 # _model_server_result.job_id ZefgZlbJMwfBFNG9N8IXVA _model_server_result.datetime_utc '2024-11-18 09:29:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fa6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 5FA6 # _exptl.entry_id 5FA6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FA6 _cell.length_a 70.073 _cell.length_b 119.322 _cell.length_c 156.862 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FA6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 174 n n N1 C10 FMN doub 175 n n C2 O2 FMN doub 176 n n C2 N3 FMN sing 177 n n N3 C4 FMN sing 178 n n N3 HN3 FMN sing 179 n n C4 O4 FMN doub 180 n n C4 C4A FMN sing 181 n n C4A N5 FMN doub 182 n n C4A C10 FMN sing 183 n n N5 C5A FMN sing 184 n n C5A C6 FMN doub 185 n y C5A C9A FMN sing 186 n y C6 C7 FMN sing 187 n y C6 H6 FMN sing 188 n n C7 C7M FMN sing 189 n n C7 C8 FMN doub 190 n y C7M HM71 FMN sing 191 n n C7M HM72 FMN sing 192 n n C7M HM73 FMN sing 193 n n C8 C8M FMN sing 194 n n C8 C9 FMN sing 195 n y C8M HM81 FMN sing 196 n n C8M HM82 FMN sing 197 n n C8M HM83 FMN sing 198 n n C9 C9A FMN doub 199 n y C9 H9 FMN sing 200 n n C9A N10 FMN sing 201 n n N10 C10 FMN sing 202 n n N10 C1' FMN sing 203 n n C1' C2' FMN sing 204 n n C1' "H1'1" FMN sing 205 n n C1' "H1'2" FMN sing 206 n n C2' O2' FMN sing 207 n n C2' C3' FMN sing 208 n n C2' H2' FMN sing 209 n n O2' HO2' FMN sing 210 n n C3' O3' FMN sing 211 n n C3' C4' FMN sing 212 n n C3' H3' FMN sing 213 n n O3' HO3' FMN sing 214 n n C4' O4' FMN sing 215 n n C4' C5' FMN sing 216 n n C4' H4' FMN sing 217 n n O4' HO4' FMN sing 218 n n C5' O5' FMN sing 219 n n C5' "H5'1" FMN sing 220 n n C5' "H5'2" FMN sing 221 n n O5' P FMN sing 222 n n P O1P FMN doub 223 n n P O2P FMN sing 224 n n P O3P FMN sing 225 n n O2P HOP2 FMN sing 226 n n O3P HOP3 FMN sing 227 n n # _atom_sites.entry_id 5FA6 _atom_sites.fract_transf_matrix[1][1] 0.014271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 701 751 FMN FMN . D 3 FAD A 1 702 752 FAD FAD . E 4 NAP A 1 703 753 NAP NAP . F 2 FMN B 1 701 751 FMN FMN . G 3 FAD B 1 702 752 FAD FAD . H 4 NAP B 1 703 753 NAP NAP . I 5 HOH A 1 801 3 HOH HOH . I 5 HOH A 2 802 53 HOH HOH . I 5 HOH A 3 803 44 HOH HOH . I 5 HOH A 4 804 197 HOH HOH . I 5 HOH A 5 805 181 HOH HOH . I 5 HOH A 6 806 194 HOH HOH . I 5 HOH A 7 807 50 HOH HOH . I 5 HOH A 8 808 89 HOH HOH . I 5 HOH A 9 809 191 HOH HOH . I 5 HOH A 10 810 188 HOH HOH . I 5 HOH A 11 811 198 HOH HOH . I 5 HOH A 12 812 37 HOH HOH . I 5 HOH A 13 813 14 HOH HOH . I 5 HOH A 14 814 1 HOH HOH . I 5 HOH A 15 815 21 HOH HOH . I 5 HOH A 16 816 190 HOH HOH . I 5 HOH A 17 817 29 HOH HOH . I 5 HOH A 18 818 103 HOH HOH . I 5 HOH A 19 819 192 HOH HOH . I 5 HOH A 20 820 39 HOH HOH . I 5 HOH A 21 821 18 HOH HOH . I 5 HOH A 22 822 67 HOH HOH . I 5 HOH A 23 823 40 HOH HOH . I 5 HOH A 24 824 80 HOH HOH . I 5 HOH A 25 825 144 HOH HOH . I 5 HOH A 26 826 38 HOH HOH . I 5 HOH A 27 827 147 HOH HOH . I 5 HOH A 28 828 56 HOH HOH . I 5 HOH A 29 829 42 HOH HOH . I 5 HOH A 30 830 2 HOH HOH . I 5 HOH A 31 831 55 HOH HOH . I 5 HOH A 32 832 16 HOH HOH . I 5 HOH A 33 833 145 HOH HOH . I 5 HOH A 34 834 196 HOH HOH . I 5 HOH A 35 835 86 HOH HOH . I 5 HOH A 36 836 114 HOH HOH . I 5 HOH A 37 837 106 HOH HOH . I 5 HOH A 38 838 136 HOH HOH . I 5 HOH A 39 839 199 HOH HOH . I 5 HOH A 40 840 165 HOH HOH . I 5 HOH A 41 841 19 HOH HOH . I 5 HOH A 42 842 45 HOH HOH . I 5 HOH A 43 843 109 HOH HOH . I 5 HOH A 44 844 65 HOH HOH . I 5 HOH A 45 845 152 HOH HOH . I 5 HOH A 46 846 75 HOH HOH . I 5 HOH A 47 847 84 HOH HOH . I 5 HOH A 48 848 143 HOH HOH . I 5 HOH A 49 849 91 HOH HOH . I 5 HOH A 50 850 60 HOH HOH . I 5 HOH A 51 851 102 HOH HOH . I 5 HOH A 52 852 186 HOH HOH . I 5 HOH A 53 853 34 HOH HOH . I 5 HOH A 54 854 30 HOH HOH . I 5 HOH A 55 855 163 HOH HOH . I 5 HOH A 56 856 135 HOH HOH . I 5 HOH A 57 857 110 HOH HOH . I 5 HOH A 58 858 164 HOH HOH . I 5 HOH A 59 859 120 HOH HOH . I 5 HOH A 60 860 116 HOH HOH . I 5 HOH A 61 861 107 HOH HOH . I 5 HOH A 62 862 15 HOH HOH . I 5 HOH A 63 863 185 HOH HOH . I 5 HOH A 64 864 31 HOH HOH . I 5 HOH A 65 865 64 HOH HOH . I 5 HOH A 66 866 182 HOH HOH . I 5 HOH A 67 867 70 HOH HOH . I 5 HOH A 68 868 151 HOH HOH . I 5 HOH A 69 869 121 HOH HOH . I 5 HOH A 70 870 13 HOH HOH . I 5 HOH A 71 871 87 HOH HOH . I 5 HOH A 72 872 6 HOH HOH . I 5 HOH A 73 873 32 HOH HOH . I 5 HOH A 74 874 62 HOH HOH . I 5 HOH A 75 875 26 HOH HOH . I 5 HOH A 76 876 138 HOH HOH . I 5 HOH A 77 877 97 HOH HOH . I 5 HOH A 78 878 124 HOH HOH . I 5 HOH A 79 879 195 HOH HOH . I 5 HOH A 80 880 76 HOH HOH . I 5 HOH A 81 881 99 HOH HOH . I 5 HOH A 82 882 131 HOH HOH . I 5 HOH A 83 883 132 HOH HOH . I 5 HOH A 84 884 171 HOH HOH . I 5 HOH A 85 885 139 HOH HOH . I 5 HOH A 86 886 140 HOH HOH . I 5 HOH A 87 887 74 HOH HOH . I 5 HOH A 88 888 128 HOH HOH . I 5 HOH A 89 889 49 HOH HOH . I 5 HOH A 90 890 22 HOH HOH . I 5 HOH A 91 891 170 HOH HOH . I 5 HOH A 92 892 82 HOH HOH . I 5 HOH A 93 893 72 HOH HOH . I 5 HOH A 94 894 130 HOH HOH . I 5 HOH A 95 895 111 HOH HOH . I 5 HOH A 96 896 117 HOH HOH . I 5 HOH A 97 897 51 HOH HOH . I 5 HOH A 98 898 101 HOH HOH . I 5 HOH A 99 899 149 HOH HOH . I 5 HOH A 100 900 156 HOH HOH . I 5 HOH A 101 901 108 HOH HOH . I 5 HOH A 102 902 153 HOH HOH . I 5 HOH A 103 903 115 HOH HOH . I 5 HOH A 104 904 104 HOH HOH . I 5 HOH A 105 905 155 HOH HOH . I 5 HOH A 106 906 161 HOH HOH . I 5 HOH A 107 907 129 HOH HOH . I 5 HOH A 108 908 68 HOH HOH . I 5 HOH A 109 909 57 HOH HOH . I 5 HOH A 110 910 93 HOH HOH . I 5 HOH A 111 911 154 HOH HOH . I 5 HOH A 112 912 183 HOH HOH . I 5 HOH A 113 913 167 HOH HOH . I 5 HOH A 114 914 134 HOH HOH . I 5 HOH A 115 915 88 HOH HOH . I 5 HOH A 116 916 83 HOH HOH . I 5 HOH A 117 917 148 HOH HOH . I 5 HOH A 118 918 100 HOH HOH . I 5 HOH A 119 919 158 HOH HOH . I 5 HOH A 120 920 113 HOH HOH . I 5 HOH A 121 921 23 HOH HOH . I 5 HOH A 122 922 172 HOH HOH . I 5 HOH A 123 923 17 HOH HOH . I 5 HOH A 124 924 41 HOH HOH . I 5 HOH A 125 925 174 HOH HOH . I 5 HOH A 126 926 98 HOH HOH . I 5 HOH A 127 927 20 HOH HOH . I 5 HOH A 128 928 178 HOH HOH . I 5 HOH A 129 929 77 HOH HOH . I 5 HOH A 130 930 79 HOH HOH . I 5 HOH A 131 931 73 HOH HOH . I 5 HOH A 132 932 150 HOH HOH . I 5 HOH A 133 933 169 HOH HOH . I 5 HOH A 134 934 85 HOH HOH . I 5 HOH A 135 935 146 HOH HOH . I 5 HOH A 136 936 54 HOH HOH . I 5 HOH A 137 937 184 HOH HOH . I 5 HOH A 138 938 5 HOH HOH . I 5 HOH A 139 939 137 HOH HOH . J 5 HOH B 1 801 59 HOH HOH . J 5 HOH B 2 802 9 HOH HOH . J 5 HOH B 3 803 10 HOH HOH . J 5 HOH B 4 804 193 HOH HOH . J 5 HOH B 5 805 27 HOH HOH . J 5 HOH B 6 806 36 HOH HOH . J 5 HOH B 7 807 123 HOH HOH . J 5 HOH B 8 808 81 HOH HOH . J 5 HOH B 9 809 47 HOH HOH . J 5 HOH B 10 810 126 HOH HOH . J 5 HOH B 11 811 12 HOH HOH . J 5 HOH B 12 812 141 HOH HOH . J 5 HOH B 13 813 160 HOH HOH . J 5 HOH B 14 814 61 HOH HOH . J 5 HOH B 15 815 46 HOH HOH . J 5 HOH B 16 816 28 HOH HOH . J 5 HOH B 17 817 157 HOH HOH . J 5 HOH B 18 818 52 HOH HOH . J 5 HOH B 19 819 48 HOH HOH . J 5 HOH B 20 820 66 HOH HOH . J 5 HOH B 21 821 119 HOH HOH . J 5 HOH B 22 822 43 HOH HOH . J 5 HOH B 23 823 24 HOH HOH . J 5 HOH B 24 824 118 HOH HOH . J 5 HOH B 25 825 125 HOH HOH . J 5 HOH B 26 826 96 HOH HOH . J 5 HOH B 27 827 90 HOH HOH . J 5 HOH B 28 828 179 HOH HOH . J 5 HOH B 29 829 189 HOH HOH . J 5 HOH B 30 830 177 HOH HOH . J 5 HOH B 31 831 94 HOH HOH . J 5 HOH B 32 832 187 HOH HOH . J 5 HOH B 33 833 8 HOH HOH . J 5 HOH B 34 834 112 HOH HOH . J 5 HOH B 35 835 122 HOH HOH . J 5 HOH B 36 836 127 HOH HOH . J 5 HOH B 37 837 176 HOH HOH . J 5 HOH B 38 838 63 HOH HOH . J 5 HOH B 39 839 11 HOH HOH . J 5 HOH B 40 840 173 HOH HOH . J 5 HOH B 41 841 78 HOH HOH . J 5 HOH B 42 842 4 HOH HOH . J 5 HOH B 43 843 69 HOH HOH . J 5 HOH B 44 844 162 HOH HOH . J 5 HOH B 45 845 180 HOH HOH . J 5 HOH B 46 846 95 HOH HOH . J 5 HOH B 47 847 25 HOH HOH . J 5 HOH B 48 848 71 HOH HOH . J 5 HOH B 49 849 159 HOH HOH . J 5 HOH B 50 850 105 HOH HOH . J 5 HOH B 51 851 133 HOH HOH . J 5 HOH B 52 852 166 HOH HOH . J 5 HOH B 53 853 35 HOH HOH . J 5 HOH B 54 854 175 HOH HOH . J 5 HOH B 55 855 168 HOH HOH . J 5 HOH B 56 856 58 HOH HOH . J 5 HOH B 57 857 142 HOH HOH . J 5 HOH B 58 858 33 HOH HOH . J 5 HOH B 59 859 92 HOH HOH . J 5 HOH B 60 860 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . F 2 -7.127 34.393 41.398 1 61.56 ? N1 FMN 701 B 1 HETATM 2 C C2 FMN . . . F 2 -7.799 34.13 42.539 1 62.44 ? C2 FMN 701 B 1 HETATM 3 O O2 FMN . . . F 2 -7.877 34.958 43.449 1 63.1 ? O2 FMN 701 B 1 HETATM 4 N N3 FMN . . . F 2 -8.394 32.893 42.637 1 61.65 ? N3 FMN 701 B 1 HETATM 5 C C4 FMN . . . F 2 -8.391 31.868 41.688 1 61.94 ? C4 FMN 701 B 1 HETATM 6 O O4 FMN . . . F 2 -9 30.852 42.016 1 60.87 ? O4 FMN 701 B 1 HETATM 7 C C4A FMN . . . F 2 -7.699 32.129 40.481 1 61.99 ? C4A FMN 701 B 1 HETATM 8 N N5 FMN . . . F 2 -7.688 31.115 39.5 1 62.62 ? N5 FMN 701 B 1 HETATM 9 C C5A FMN . . . F 2 -6.992 31.454 38.342 1 63.37 ? C5A FMN 701 B 1 HETATM 10 C C6 FMN . . . F 2 -6.979 30.446 37.322 1 63.56 ? C6 FMN 701 B 1 HETATM 11 C C7 FMN . . . F 2 -6.313 30.652 36.091 1 64.23 ? C7 FMN 701 B 1 HETATM 12 C C7M FMN . . . F 2 -6.387 29.478 35.085 1 64.48 ? C7M FMN 701 B 1 HETATM 13 C C8 FMN . . . F 2 -5.595 31.939 35.821 1 64.03 ? C8 FMN 701 B 1 HETATM 14 C C8M FMN . . . F 2 -4.913 32.26 34.675 1 65.35 ? C8M FMN 701 B 1 HETATM 15 C C9 FMN . . . F 2 -5.6 32.917 36.795 1 64.01 ? C9 FMN 701 B 1 HETATM 16 C C9A FMN . . . F 2 -6.288 32.723 38.074 1 63.98 ? C9A FMN 701 B 1 HETATM 17 N N10 FMN . . . F 2 -6.344 33.725 39.156 1 62.17 ? N10 FMN 701 B 1 HETATM 18 C C10 FMN . . . F 2 -7.08 33.422 40.401 1 62.46 ? C10 FMN 701 B 1 HETATM 19 C C1' FMN . . . F 2 -5.682 35.013 39.012 1 60.47 ? C1' FMN 701 B 1 HETATM 20 C C2' FMN . . . F 2 -4.19 34.984 39.456 1 58.39 ? C2' FMN 701 B 1 HETATM 21 O O2' FMN . . . F 2 -4.129 34.54 40.858 1 57.56 ? O2' FMN 701 B 1 HETATM 22 C C3' FMN . . . F 2 -3.554 36.364 39.297 1 57.11 ? C3' FMN 701 B 1 HETATM 23 O O3' FMN . . . F 2 -3.645 36.698 37.886 1 58.64 ? O3' FMN 701 B 1 HETATM 24 C C4' FMN . . . F 2 -2.051 36.273 39.808 1 55.26 ? C4' FMN 701 B 1 HETATM 25 O O4' FMN . . . F 2 -1.602 37.652 39.643 1 56.02 ? O4' FMN 701 B 1 HETATM 26 C C5' FMN . . . F 2 -1.099 35.469 38.948 1 51.5 ? C5' FMN 701 B 1 HETATM 27 O O5' FMN . . . F 2 0.247 35.406 39.569 1 47.39 ? O5' FMN 701 B 1 HETATM 28 P P FMN . . . F 2 1.531 34.695 38.963 1 53.45 ? P FMN 701 B 1 HETATM 29 O O1P FMN . . . F 2 2.015 35.462 37.778 1 51.54 ? O1P FMN 701 B 1 HETATM 30 O O2P FMN . . . F 2 1.098 33.202 38.783 1 51.79 ? O2P FMN 701 B 1 HETATM 31 O O3P FMN . . . F 2 2.592 34.927 40.13 1 48.9 ? O3P FMN 701 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #