data_5FA6 # _model_server_result.job_id jNlE8rJDB6YPEJQl8TuBpQ _model_server_result.datetime_utc '2024-11-18 09:38:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fa6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 5FA6 # _exptl.entry_id 5FA6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FA6 _cell.length_a 70.073 _cell.length_b 119.322 _cell.length_c 156.862 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FA6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 382 n n PA O2A NAP sing 383 n n PA O5B NAP sing 384 n n PA O3 NAP sing 385 n n O2A HOA2 NAP sing 386 n n O5B C5B NAP sing 387 n n C5B C4B NAP sing 388 n n C5B H51A NAP sing 389 n n C5B H52A NAP sing 390 n n C4B O4B NAP sing 391 n n C4B C3B NAP sing 392 n n C4B H4B NAP sing 393 n n O4B C1B NAP sing 394 n n C3B O3B NAP sing 395 n n C3B C2B NAP sing 396 n n C3B H3B NAP sing 397 n n O3B HO3A NAP sing 398 n n C2B O2B NAP sing 399 n n C2B C1B NAP sing 400 n n C2B H2B NAP sing 401 n n O2B P2B NAP sing 402 n n C1B N9A NAP sing 403 n n C1B H1B NAP sing 404 n n N9A C8A NAP sing 405 n y N9A C4A NAP sing 406 n y C8A N7A NAP doub 407 n y C8A H8A NAP sing 408 n n N7A C5A NAP sing 409 n y C5A C6A NAP sing 410 n y C5A C4A NAP doub 411 n y C6A N6A NAP sing 412 n n C6A N1A NAP doub 413 n y N6A H61A NAP sing 414 n n N6A H62A NAP sing 415 n n N1A C2A NAP sing 416 n y C2A N3A NAP doub 417 n y C2A H2A NAP sing 418 n n N3A C4A NAP sing 419 n y O3 PN NAP sing 420 n n PN O1N NAP doub 421 n n PN O2N NAP sing 422 n n PN O5D NAP sing 423 n n O5D C5D NAP sing 424 n n C5D C4D NAP sing 425 n n C5D H51N NAP sing 426 n n C5D H52N NAP sing 427 n n C4D O4D NAP sing 428 n n C4D C3D NAP sing 429 n n C4D H4D NAP sing 430 n n O4D C1D NAP sing 431 n n C3D O3D NAP sing 432 n n C3D C2D NAP sing 433 n n C3D H3D NAP sing 434 n n O3D HO3N NAP sing 435 n n C2D O2D NAP sing 436 n n C2D C1D NAP sing 437 n n C2D H2D NAP sing 438 n n O2D HO2N NAP sing 439 n n C1D N1N NAP sing 440 n n C1D H1D NAP sing 441 n n N1N C2N NAP sing 442 n y N1N C6N NAP doub 443 n y C2N C3N NAP doub 444 n y C2N H2N NAP sing 445 n n C3N C7N NAP sing 446 n n C3N C4N NAP sing 447 n y C7N O7N NAP doub 448 n n C7N N7N NAP sing 449 n n N7N H71N NAP sing 450 n n N7N H72N NAP sing 451 n n C4N C5N NAP doub 452 n y C4N H4N NAP sing 453 n n C5N C6N NAP sing 454 n y C5N H5N NAP sing 455 n n C6N H6N NAP sing 456 n n P2B O1X NAP doub 457 n n P2B O2X NAP sing 458 n n P2B O3X NAP sing 459 n n O2X HOP2 NAP sing 460 n n O3X HOP3 NAP sing 461 n n # _atom_sites.entry_id 5FA6 _atom_sites.fract_transf_matrix[1][1] 0.014271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 701 751 FMN FMN . D 3 FAD A 1 702 752 FAD FAD . E 4 NAP A 1 703 753 NAP NAP . F 2 FMN B 1 701 751 FMN FMN . G 3 FAD B 1 702 752 FAD FAD . H 4 NAP B 1 703 753 NAP NAP . I 5 HOH A 1 801 3 HOH HOH . I 5 HOH A 2 802 53 HOH HOH . I 5 HOH A 3 803 44 HOH HOH . I 5 HOH A 4 804 197 HOH HOH . I 5 HOH A 5 805 181 HOH HOH . I 5 HOH A 6 806 194 HOH HOH . I 5 HOH A 7 807 50 HOH HOH . I 5 HOH A 8 808 89 HOH HOH . I 5 HOH A 9 809 191 HOH HOH . I 5 HOH A 10 810 188 HOH HOH . I 5 HOH A 11 811 198 HOH HOH . I 5 HOH A 12 812 37 HOH HOH . I 5 HOH A 13 813 14 HOH HOH . I 5 HOH A 14 814 1 HOH HOH . I 5 HOH A 15 815 21 HOH HOH . I 5 HOH A 16 816 190 HOH HOH . I 5 HOH A 17 817 29 HOH HOH . I 5 HOH A 18 818 103 HOH HOH . I 5 HOH A 19 819 192 HOH HOH . I 5 HOH A 20 820 39 HOH HOH . I 5 HOH A 21 821 18 HOH HOH . I 5 HOH A 22 822 67 HOH HOH . I 5 HOH A 23 823 40 HOH HOH . I 5 HOH A 24 824 80 HOH HOH . I 5 HOH A 25 825 144 HOH HOH . I 5 HOH A 26 826 38 HOH HOH . I 5 HOH A 27 827 147 HOH HOH . I 5 HOH A 28 828 56 HOH HOH . I 5 HOH A 29 829 42 HOH HOH . I 5 HOH A 30 830 2 HOH HOH . I 5 HOH A 31 831 55 HOH HOH . I 5 HOH A 32 832 16 HOH HOH . I 5 HOH A 33 833 145 HOH HOH . I 5 HOH A 34 834 196 HOH HOH . I 5 HOH A 35 835 86 HOH HOH . I 5 HOH A 36 836 114 HOH HOH . I 5 HOH A 37 837 106 HOH HOH . I 5 HOH A 38 838 136 HOH HOH . I 5 HOH A 39 839 199 HOH HOH . I 5 HOH A 40 840 165 HOH HOH . I 5 HOH A 41 841 19 HOH HOH . I 5 HOH A 42 842 45 HOH HOH . I 5 HOH A 43 843 109 HOH HOH . I 5 HOH A 44 844 65 HOH HOH . I 5 HOH A 45 845 152 HOH HOH . I 5 HOH A 46 846 75 HOH HOH . I 5 HOH A 47 847 84 HOH HOH . I 5 HOH A 48 848 143 HOH HOH . I 5 HOH A 49 849 91 HOH HOH . I 5 HOH A 50 850 60 HOH HOH . I 5 HOH A 51 851 102 HOH HOH . I 5 HOH A 52 852 186 HOH HOH . I 5 HOH A 53 853 34 HOH HOH . I 5 HOH A 54 854 30 HOH HOH . I 5 HOH A 55 855 163 HOH HOH . I 5 HOH A 56 856 135 HOH HOH . I 5 HOH A 57 857 110 HOH HOH . I 5 HOH A 58 858 164 HOH HOH . I 5 HOH A 59 859 120 HOH HOH . I 5 HOH A 60 860 116 HOH HOH . I 5 HOH A 61 861 107 HOH HOH . I 5 HOH A 62 862 15 HOH HOH . I 5 HOH A 63 863 185 HOH HOH . I 5 HOH A 64 864 31 HOH HOH . I 5 HOH A 65 865 64 HOH HOH . I 5 HOH A 66 866 182 HOH HOH . I 5 HOH A 67 867 70 HOH HOH . I 5 HOH A 68 868 151 HOH HOH . I 5 HOH A 69 869 121 HOH HOH . I 5 HOH A 70 870 13 HOH HOH . I 5 HOH A 71 871 87 HOH HOH . I 5 HOH A 72 872 6 HOH HOH . I 5 HOH A 73 873 32 HOH HOH . I 5 HOH A 74 874 62 HOH HOH . I 5 HOH A 75 875 26 HOH HOH . I 5 HOH A 76 876 138 HOH HOH . I 5 HOH A 77 877 97 HOH HOH . I 5 HOH A 78 878 124 HOH HOH . I 5 HOH A 79 879 195 HOH HOH . I 5 HOH A 80 880 76 HOH HOH . I 5 HOH A 81 881 99 HOH HOH . I 5 HOH A 82 882 131 HOH HOH . I 5 HOH A 83 883 132 HOH HOH . I 5 HOH A 84 884 171 HOH HOH . I 5 HOH A 85 885 139 HOH HOH . I 5 HOH A 86 886 140 HOH HOH . I 5 HOH A 87 887 74 HOH HOH . I 5 HOH A 88 888 128 HOH HOH . I 5 HOH A 89 889 49 HOH HOH . I 5 HOH A 90 890 22 HOH HOH . I 5 HOH A 91 891 170 HOH HOH . I 5 HOH A 92 892 82 HOH HOH . I 5 HOH A 93 893 72 HOH HOH . I 5 HOH A 94 894 130 HOH HOH . I 5 HOH A 95 895 111 HOH HOH . I 5 HOH A 96 896 117 HOH HOH . I 5 HOH A 97 897 51 HOH HOH . I 5 HOH A 98 898 101 HOH HOH . I 5 HOH A 99 899 149 HOH HOH . I 5 HOH A 100 900 156 HOH HOH . I 5 HOH A 101 901 108 HOH HOH . I 5 HOH A 102 902 153 HOH HOH . I 5 HOH A 103 903 115 HOH HOH . I 5 HOH A 104 904 104 HOH HOH . I 5 HOH A 105 905 155 HOH HOH . I 5 HOH A 106 906 161 HOH HOH . I 5 HOH A 107 907 129 HOH HOH . I 5 HOH A 108 908 68 HOH HOH . I 5 HOH A 109 909 57 HOH HOH . I 5 HOH A 110 910 93 HOH HOH . I 5 HOH A 111 911 154 HOH HOH . I 5 HOH A 112 912 183 HOH HOH . I 5 HOH A 113 913 167 HOH HOH . I 5 HOH A 114 914 134 HOH HOH . I 5 HOH A 115 915 88 HOH HOH . I 5 HOH A 116 916 83 HOH HOH . I 5 HOH A 117 917 148 HOH HOH . I 5 HOH A 118 918 100 HOH HOH . I 5 HOH A 119 919 158 HOH HOH . I 5 HOH A 120 920 113 HOH HOH . I 5 HOH A 121 921 23 HOH HOH . I 5 HOH A 122 922 172 HOH HOH . I 5 HOH A 123 923 17 HOH HOH . I 5 HOH A 124 924 41 HOH HOH . I 5 HOH A 125 925 174 HOH HOH . I 5 HOH A 126 926 98 HOH HOH . I 5 HOH A 127 927 20 HOH HOH . I 5 HOH A 128 928 178 HOH HOH . I 5 HOH A 129 929 77 HOH HOH . I 5 HOH A 130 930 79 HOH HOH . I 5 HOH A 131 931 73 HOH HOH . I 5 HOH A 132 932 150 HOH HOH . I 5 HOH A 133 933 169 HOH HOH . I 5 HOH A 134 934 85 HOH HOH . I 5 HOH A 135 935 146 HOH HOH . I 5 HOH A 136 936 54 HOH HOH . I 5 HOH A 137 937 184 HOH HOH . I 5 HOH A 138 938 5 HOH HOH . I 5 HOH A 139 939 137 HOH HOH . J 5 HOH B 1 801 59 HOH HOH . J 5 HOH B 2 802 9 HOH HOH . J 5 HOH B 3 803 10 HOH HOH . J 5 HOH B 4 804 193 HOH HOH . J 5 HOH B 5 805 27 HOH HOH . J 5 HOH B 6 806 36 HOH HOH . J 5 HOH B 7 807 123 HOH HOH . J 5 HOH B 8 808 81 HOH HOH . J 5 HOH B 9 809 47 HOH HOH . J 5 HOH B 10 810 126 HOH HOH . J 5 HOH B 11 811 12 HOH HOH . J 5 HOH B 12 812 141 HOH HOH . J 5 HOH B 13 813 160 HOH HOH . J 5 HOH B 14 814 61 HOH HOH . J 5 HOH B 15 815 46 HOH HOH . J 5 HOH B 16 816 28 HOH HOH . J 5 HOH B 17 817 157 HOH HOH . J 5 HOH B 18 818 52 HOH HOH . J 5 HOH B 19 819 48 HOH HOH . J 5 HOH B 20 820 66 HOH HOH . J 5 HOH B 21 821 119 HOH HOH . J 5 HOH B 22 822 43 HOH HOH . J 5 HOH B 23 823 24 HOH HOH . J 5 HOH B 24 824 118 HOH HOH . J 5 HOH B 25 825 125 HOH HOH . J 5 HOH B 26 826 96 HOH HOH . J 5 HOH B 27 827 90 HOH HOH . J 5 HOH B 28 828 179 HOH HOH . J 5 HOH B 29 829 189 HOH HOH . J 5 HOH B 30 830 177 HOH HOH . J 5 HOH B 31 831 94 HOH HOH . J 5 HOH B 32 832 187 HOH HOH . J 5 HOH B 33 833 8 HOH HOH . J 5 HOH B 34 834 112 HOH HOH . J 5 HOH B 35 835 122 HOH HOH . J 5 HOH B 36 836 127 HOH HOH . J 5 HOH B 37 837 176 HOH HOH . J 5 HOH B 38 838 63 HOH HOH . J 5 HOH B 39 839 11 HOH HOH . J 5 HOH B 40 840 173 HOH HOH . J 5 HOH B 41 841 78 HOH HOH . J 5 HOH B 42 842 4 HOH HOH . J 5 HOH B 43 843 69 HOH HOH . J 5 HOH B 44 844 162 HOH HOH . J 5 HOH B 45 845 180 HOH HOH . J 5 HOH B 46 846 95 HOH HOH . J 5 HOH B 47 847 25 HOH HOH . J 5 HOH B 48 848 71 HOH HOH . J 5 HOH B 49 849 159 HOH HOH . J 5 HOH B 50 850 105 HOH HOH . J 5 HOH B 51 851 133 HOH HOH . J 5 HOH B 52 852 166 HOH HOH . J 5 HOH B 53 853 35 HOH HOH . J 5 HOH B 54 854 175 HOH HOH . J 5 HOH B 55 855 168 HOH HOH . J 5 HOH B 56 856 58 HOH HOH . J 5 HOH B 57 857 142 HOH HOH . J 5 HOH B 58 858 33 HOH HOH . J 5 HOH B 59 859 92 HOH HOH . J 5 HOH B 60 860 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 4 0.605 7.142 -2.592 1 65.76 ? PA NAP 703 A 1 HETATM 2 O O1A NAP . . . E 4 0.595 8.221 -3.605 1 64.7 ? O1A NAP 703 A 1 HETATM 3 O O2A NAP . . . E 4 1.142 7.437 -1.244 1 67.93 ? O2A NAP 703 A 1 HETATM 4 O O5B NAP . . . E 4 -0.88 6.539 -2.444 1 63.63 ? O5B NAP 703 A 1 HETATM 5 C C5B NAP . . . E 4 -1.604 6.163 -3.617 1 58.64 ? C5B NAP 703 A 1 HETATM 6 C C4B NAP . . . E 4 -3.101 6.08 -3.31 1 56.44 ? C4B NAP 703 A 1 HETATM 7 O O4B NAP . . . E 4 -3.301 5.132 -2.246 1 53.28 ? O4B NAP 703 A 1 HETATM 8 C C3B NAP . . . E 4 -3.598 7.422 -2.79 1 55.4 ? C3B NAP 703 A 1 HETATM 9 O O3B NAP . . . E 4 -4.948 7.634 -3.23 1 56.9 ? O3B NAP 703 A 1 HETATM 10 C C2B NAP . . . E 4 -3.558 7.219 -1.286 1 54.7 ? C2B NAP 703 A 1 HETATM 11 O O2B NAP . . . E 4 -4.505 8.101 -0.663 1 54.59 ? O2B NAP 703 A 1 HETATM 12 C C1B NAP . . . E 4 -4.109 5.806 -1.269 1 53.57 ? C1B NAP 703 A 1 HETATM 13 N N9A NAP . . . E 4 -4.048 5.15 0.057 1 52.07 ? N9A NAP 703 A 1 HETATM 14 C C8A NAP . . . E 4 -3.39 5.565 1.136 1 50.73 ? C8A NAP 703 A 1 HETATM 15 N N7A NAP . . . E 4 -3.568 4.66 2.095 1 49.55 ? N7A NAP 703 A 1 HETATM 16 C C5A NAP . . . E 4 -4.334 3.686 1.609 1 47.58 ? C5A NAP 703 A 1 HETATM 17 C C6A NAP . . . E 4 -4.786 2.561 2.158 1 45.82 ? C6A NAP 703 A 1 HETATM 18 N N6A NAP . . . E 4 -4.487 2.362 3.439 1 43.64 ? N6A NAP 703 A 1 HETATM 19 N N1A NAP . . . E 4 -5.527 1.683 1.468 1 45.62 ? N1A NAP 703 A 1 HETATM 20 C C2A NAP . . . E 4 -5.827 1.956 0.129 1 45.33 ? C2A NAP 703 A 1 HETATM 21 N N3A NAP . . . E 4 -5.343 3.149 -0.42 1 47.94 ? N3A NAP 703 A 1 HETATM 22 C C4A NAP . . . E 4 -4.616 3.981 0.341 1 49.98 ? C4A NAP 703 A 1 HETATM 23 O O3 NAP . . . E 4 1.406 5.879 -3.187 1 72.6 ? O3 NAP 703 A 1 HETATM 24 P PN NAP . . . E 4 2.847 5.862 -3.903 1 80.22 ? PN NAP 703 A 1 HETATM 25 O O1N NAP . . . E 4 2.817 4.91 -5.036 1 77.38 ? O1N NAP 703 A 1 HETATM 26 O O2N NAP . . . E 4 3.273 7.258 -4.149 1 77.25 ? O2N NAP 703 A 1 HETATM 27 O O5D NAP . . . E 4 3.782 5.255 -2.742 1 85.61 ? O5D NAP 703 A 1 HETATM 28 P P2B NAP . . . E 4 -4.055 9.15 0.474 1 53.48 ? P2B NAP 703 A 1 HETATM 29 O O1X NAP . . . E 4 -4.751 10.393 0.073 1 55.71 ? O1X NAP 703 A 1 HETATM 30 O O2X NAP . . . E 4 -4.542 8.549 1.736 1 52.95 ? O2X NAP 703 A 1 HETATM 31 O O3X NAP . . . E 4 -2.581 9.206 0.344 1 56.06 ? O3X NAP 703 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #