data_5FAC
#
_model_server_result.job_id            p9Y_MCuE7WAnw4qG3SUuRg 
_model_server_result.datetime_utc      '2024-10-31 09:27:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fac 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":401}' 
#
_entry.id    5FAC 
#
_exptl.entry_id    5FAC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.26 
_cell.angle_gamma         90 
_cell.entry_id            5FAC 
_cell.length_a            78.96 
_cell.length_b            87.17 
_cell.length_c            109.626 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FAC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 65 A LYS 46 1_555 E C4A PLP . A PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? 
covale ? covale2 A C LEU 159 A LEU 140 1_555 A N KCX 160 A KCX 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C KCX 160 A KCX 141 1_555 A N ALA 161 A ALA 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 B NZ LYS 65 B LYS 46 1_555 G C4A PLP . B PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.27 ? 
covale ? covale5 B C LEU 159 B LEU 140 1_555 B N KCX 160 B KCX 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale6 B C KCX 160 B KCX 141 1_555 B N ALA 161 B ALA 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale7 C NZ LYS 65 C LYS 46 1_555 I C4A PLP . C PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.289 ? 
covale ? covale8 C C LEU 159 C LEU 140 1_555 C N KCX 160 C KCX 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale9 C C KCX 160 C KCX 141 1_555 C N ALA 161 C ALA 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale10 D NZ LYS 65 D LYS 46 1_555 K C4A PLP . D PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.292 ? 
covale ? covale11 D C LEU 159 D LEU 140 1_555 D N KCX 160 D KCX 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale12 D C KCX 160 D KCX 141 1_555 D N ALA 161 D ALA 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 286 n y 
N1 C6 PLP sing 287 n y 
C2 C2A PLP sing 288 n n 
C2 C3 PLP sing 289 n y 
C2A H2A1 PLP sing 290 n n 
C2A H2A2 PLP sing 291 n n 
C2A H2A3 PLP sing 292 n n 
C3 O3 PLP sing 293 n n 
C3 C4 PLP doub 294 n y 
O3 HO3 PLP sing 295 n n 
C4 C4A PLP sing 296 n n 
C4 C5 PLP sing 297 n y 
C4A O4A PLP doub 298 n n 
C4A H4A PLP sing 299 n n 
C5 C6 PLP doub 300 n y 
C5 C5A PLP sing 301 n n 
C6 H6 PLP sing 302 n n 
C5A O4P PLP sing 303 n n 
C5A H5A1 PLP sing 304 n n 
C5A H5A2 PLP sing 305 n n 
O4P P PLP sing 306 n n 
P O1P PLP doub 307 n n 
P O2P PLP sing 308 n n 
P O3P PLP sing 309 n n 
O2P HOP2 PLP sing 310 n n 
O3P HOP3 PLP sing 311 n n 
#
_atom_sites.entry_id                     5FAC 
_atom_sites.fract_transf_matrix[1][1]    0.012665 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002753 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011472 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PLP A 1 401 401 PLP PLP . 
F 3 CL A 1 402 3 CL CL . 
G 2 PLP B 1 401 401 PLP PLP . 
H 3 CL B 1 402 1 CL CL . 
I 2 PLP C 1 401 401 PLP PLP . 
J 3 CL C 1 402 2 CL CL . 
K 2 PLP D 1 401 401 PLP PLP . 
L 3 CL D 1 402 4 CL CL . 
M 4 HOH A 1 501 169 HOH HOH . 
M 4 HOH A 2 502 21 HOH HOH . 
M 4 HOH A 3 503 418 HOH HOH . 
M 4 HOH A 4 504 164 HOH HOH . 
M 4 HOH A 5 505 425 HOH HOH . 
M 4 HOH A 6 506 203 HOH HOH . 
M 4 HOH A 7 507 106 HOH HOH . 
M 4 HOH A 8 508 34 HOH HOH . 
M 4 HOH A 9 509 194 HOH HOH . 
M 4 HOH A 10 510 102 HOH HOH . 
M 4 HOH A 11 511 133 HOH HOH . 
M 4 HOH A 12 512 90 HOH HOH . 
M 4 HOH A 13 513 336 HOH HOH . 
M 4 HOH A 14 514 6 HOH HOH . 
M 4 HOH A 15 515 123 HOH HOH . 
M 4 HOH A 16 516 121 HOH HOH . 
M 4 HOH A 17 517 13 HOH HOH . 
M 4 HOH A 18 518 241 HOH HOH . 
M 4 HOH A 19 519 356 HOH HOH . 
M 4 HOH A 20 520 12 HOH HOH . 
M 4 HOH A 21 521 150 HOH HOH . 
M 4 HOH A 22 522 94 HOH HOH . 
M 4 HOH A 23 523 139 HOH HOH . 
M 4 HOH A 24 524 316 HOH HOH . 
M 4 HOH A 25 525 44 HOH HOH . 
M 4 HOH A 26 526 383 HOH HOH . 
M 4 HOH A 27 527 51 HOH HOH . 
M 4 HOH A 28 528 138 HOH HOH . 
M 4 HOH A 29 529 270 HOH HOH . 
M 4 HOH A 30 530 427 HOH HOH . 
M 4 HOH A 31 531 142 HOH HOH . 
M 4 HOH A 32 532 339 HOH HOH . 
M 4 HOH A 33 533 101 HOH HOH . 
M 4 HOH A 34 534 186 HOH HOH . 
M 4 HOH A 35 535 393 HOH HOH . 
M 4 HOH A 36 536 419 HOH HOH . 
M 4 HOH A 37 537 136 HOH HOH . 
M 4 HOH A 38 538 312 HOH HOH . 
M 4 HOH A 39 539 4 HOH HOH . 
M 4 HOH A 40 540 264 HOH HOH . 
M 4 HOH A 41 541 229 HOH HOH . 
M 4 HOH A 42 542 210 HOH HOH . 
M 4 HOH A 43 543 28 HOH HOH . 
M 4 HOH A 44 544 374 HOH HOH . 
M 4 HOH A 45 545 402 HOH HOH . 
M 4 HOH A 46 546 252 HOH HOH . 
M 4 HOH A 47 547 208 HOH HOH . 
M 4 HOH A 48 548 392 HOH HOH . 
M 4 HOH A 49 549 211 HOH HOH . 
M 4 HOH A 50 550 424 HOH HOH . 
M 4 HOH A 51 551 385 HOH HOH . 
M 4 HOH A 52 552 403 HOH HOH . 
M 4 HOH A 53 553 384 HOH HOH . 
N 4 HOH B 1 501 68 HOH HOH . 
N 4 HOH B 2 502 413 HOH HOH . 
N 4 HOH B 3 503 148 HOH HOH . 
N 4 HOH B 4 504 120 HOH HOH . 
N 4 HOH B 5 505 69 HOH HOH . 
N 4 HOH B 6 506 60 HOH HOH . 
N 4 HOH B 7 507 303 HOH HOH . 
N 4 HOH B 8 508 179 HOH HOH . 
N 4 HOH B 9 509 93 HOH HOH . 
N 4 HOH B 10 510 3 HOH HOH . 
N 4 HOH B 11 511 99 HOH HOH . 
N 4 HOH B 12 512 423 HOH HOH . 
N 4 HOH B 13 513 234 HOH HOH . 
N 4 HOH B 14 514 18 HOH HOH . 
N 4 HOH B 15 515 198 HOH HOH . 
N 4 HOH B 16 516 97 HOH HOH . 
N 4 HOH B 17 517 63 HOH HOH . 
N 4 HOH B 18 518 330 HOH HOH . 
N 4 HOH B 19 519 49 HOH HOH . 
N 4 HOH B 20 520 209 HOH HOH . 
N 4 HOH B 21 521 72 HOH HOH . 
N 4 HOH B 22 522 126 HOH HOH . 
N 4 HOH B 23 523 80 HOH HOH . 
N 4 HOH B 24 524 137 HOH HOH . 
N 4 HOH B 25 525 389 HOH HOH . 
N 4 HOH B 26 526 231 HOH HOH . 
N 4 HOH B 27 527 161 HOH HOH . 
N 4 HOH B 28 528 171 HOH HOH . 
N 4 HOH B 29 529 345 HOH HOH . 
N 4 HOH B 30 530 38 HOH HOH . 
N 4 HOH B 31 531 411 HOH HOH . 
N 4 HOH B 32 532 263 HOH HOH . 
N 4 HOH B 33 533 78 HOH HOH . 
N 4 HOH B 34 534 190 HOH HOH . 
N 4 HOH B 35 535 26 HOH HOH . 
N 4 HOH B 36 536 48 HOH HOH . 
N 4 HOH B 37 537 414 HOH HOH . 
N 4 HOH B 38 538 256 HOH HOH . 
N 4 HOH B 39 539 67 HOH HOH . 
N 4 HOH B 40 540 410 HOH HOH . 
N 4 HOH B 41 541 17 HOH HOH . 
N 4 HOH B 42 542 298 HOH HOH . 
N 4 HOH B 43 543 388 HOH HOH . 
O 4 HOH C 1 501 174 HOH HOH . 
O 4 HOH C 2 502 14 HOH HOH . 
O 4 HOH C 3 503 279 HOH HOH . 
O 4 HOH C 4 504 74 HOH HOH . 
O 4 HOH C 5 505 111 HOH HOH . 
O 4 HOH C 6 506 10 HOH HOH . 
O 4 HOH C 7 507 147 HOH HOH . 
O 4 HOH C 8 508 420 HOH HOH . 
O 4 HOH C 9 509 143 HOH HOH . 
O 4 HOH C 10 510 73 HOH HOH . 
O 4 HOH C 11 511 195 HOH HOH . 
O 4 HOH C 12 512 50 HOH HOH . 
O 4 HOH C 13 513 192 HOH HOH . 
O 4 HOH C 14 514 360 HOH HOH . 
O 4 HOH C 15 515 145 HOH HOH . 
O 4 HOH C 16 516 353 HOH HOH . 
O 4 HOH C 17 517 331 HOH HOH . 
O 4 HOH C 18 518 91 HOH HOH . 
O 4 HOH C 19 519 55 HOH HOH . 
O 4 HOH C 20 520 422 HOH HOH . 
O 4 HOH C 21 521 395 HOH HOH . 
O 4 HOH C 22 522 180 HOH HOH . 
O 4 HOH C 23 523 35 HOH HOH . 
O 4 HOH C 24 524 283 HOH HOH . 
O 4 HOH C 25 525 181 HOH HOH . 
O 4 HOH C 26 526 85 HOH HOH . 
O 4 HOH C 27 527 79 HOH HOH . 
O 4 HOH C 28 528 407 HOH HOH . 
O 4 HOH C 29 529 225 HOH HOH . 
O 4 HOH C 30 530 81 HOH HOH . 
O 4 HOH C 31 531 373 HOH HOH . 
O 4 HOH C 32 532 417 HOH HOH . 
P 4 HOH D 1 501 226 HOH HOH . 
P 4 HOH D 2 502 153 HOH HOH . 
P 4 HOH D 3 503 350 HOH HOH . 
P 4 HOH D 4 504 5 HOH HOH . 
P 4 HOH D 5 505 155 HOH HOH . 
P 4 HOH D 6 506 117 HOH HOH . 
P 4 HOH D 7 507 250 HOH HOH . 
P 4 HOH D 8 508 426 HOH HOH . 
P 4 HOH D 9 509 160 HOH HOH . 
P 4 HOH D 10 510 304 HOH HOH . 
P 4 HOH D 11 511 269 HOH HOH . 
P 4 HOH D 12 512 11 HOH HOH . 
P 4 HOH D 13 513 323 HOH HOH . 
P 4 HOH D 14 514 245 HOH HOH . 
P 4 HOH D 15 515 178 HOH HOH . 
P 4 HOH D 16 516 251 HOH HOH . 
P 4 HOH D 17 517 22 HOH HOH . 
P 4 HOH D 18 518 273 HOH HOH . 
P 4 HOH D 19 519 213 HOH HOH . 
P 4 HOH D 20 520 113 HOH HOH . 
P 4 HOH D 21 521 7 HOH HOH . 
P 4 HOH D 22 522 307 HOH HOH . 
P 4 HOH D 23 523 107 HOH HOH . 
P 4 HOH D 24 524 285 HOH HOH . 
P 4 HOH D 25 525 309 HOH HOH . 
P 4 HOH D 26 526 168 HOH HOH . 
P 4 HOH D 27 527 66 HOH HOH . 
P 4 HOH D 28 528 23 HOH HOH . 
P 4 HOH D 29 529 129 HOH HOH . 
P 4 HOH D 30 530 288 HOH HOH . 
P 4 HOH D 31 531 361 HOH HOH . 
P 4 HOH D 32 532 415 HOH HOH . 
P 4 HOH D 33 533 329 HOH HOH . 
P 4 HOH D 34 534 394 HOH HOH . 
P 4 HOH D 35 535 130 HOH HOH . 
P 4 HOH D 36 536 416 HOH HOH . 
P 4 HOH D 37 537 32 HOH HOH . 
P 4 HOH D 38 538 319 HOH HOH . 
P 4 HOH D 39 539 399 HOH HOH . 
P 4 HOH D 40 540 341 HOH HOH . 
P 4 HOH D 41 541 421 HOH HOH . 
P 4 HOH D 42 542 377 HOH HOH . 
P 4 HOH D 43 543 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . K 2 52.06 9.725 -5.441 1 62.11 ? N1 PLP 401 D 1 
HETATM 2 C C2 PLP . . . K 2 51.158 9.813 -4.424 1 62.4 ? C2 PLP 401 D 1 
HETATM 3 C C2A PLP . . . K 2 51.574 9.541 -3.002 1 60.84 ? C2A PLP 401 D 1 
HETATM 4 C C3 PLP . . . K 2 49.747 10.193 -4.711 1 63.61 ? C3 PLP 401 D 1 
HETATM 5 O O3 PLP . . . K 2 48.828 10.288 -3.709 1 59.72 ? O3 PLP 401 D 1 
HETATM 6 C C4 PLP . . . K 2 49.352 10.479 -6.129 1 63.72 ? C4 PLP 401 D 1 
HETATM 7 C C4A PLP . . . K 2 47.931 10.865 -6.432 1 55.65 ? C4A PLP 401 D 1 
HETATM 8 C C5 PLP . . . K 2 50.46 10.344 -7.152 1 62.99 ? C5 PLP 401 D 1 
HETATM 9 C C6 PLP . . . K 2 51.752 9.967 -6.731 1 61.12 ? C6 PLP 401 D 1 
HETATM 10 C C5A PLP . . . K 2 50.245 10.619 -8.641 1 63.53 ? C5A PLP 401 D 1 
HETATM 11 O O4P PLP . . . K 2 49.919 12.016 -8.94 1 56.71 ? O4P PLP 401 D 1 
HETATM 12 P P PLP . . . K 2 49.874 12.607 -10.454 1 40.92 ? P PLP 401 D 1 
HETATM 13 O O1P PLP . . . K 2 51.141 12.102 -11.067 1 39.04 ? O1P PLP 401 D 1 
HETATM 14 O O2P PLP . . . K 2 48.666 11.95 -11.045 1 41.38 ? O2P PLP 401 D 1 
HETATM 15 O O3P PLP . . . K 2 49.793 14.104 -10.294 1 42.72 ? O3P PLP 401 D 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           44 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           15 
#