data_5FAF # _model_server_result.job_id JswqHvDYhacKcyvmttwvuQ _model_server_result.datetime_utc '2024-11-04 20:34:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5faf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5FAF # _exptl.entry_id 5FAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FAF _cell.length_a 26.39 _cell.length_b 50.12 _cell.length_c 80.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 188 1_555 A SG CYS 54 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc1 A O GLY 39 A GLY 186 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc2 A OD1 ASP 40 A ASP 187 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 A OE1 GLU 62 A GLU 209 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc4 A OE2 GLU 62 A GLU 209 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc5 A OE1 GLU 111 A GLU 258 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc6 A OE2 GLU 111 A GLU 258 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc7 A OE1 GLU 111 A GLU 258 1_555 D CA CA . A CA 303 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc8 A OE2 GLU 111 A GLU 258 1_555 D CA CA . A CA 303 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc9 A OD1 ASP 112 A ASP 259 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc10 A OD2 ASP 112 A ASP 259 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc11 B CA CA . A CA 301 1_555 J O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc12 B CA CA . A CA 301 1_555 J O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc13 D CA CA . A CA 303 1_555 J O HOH . A HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc14 D CA CA . A CA 303 1_555 J O HOH . A HOH 548 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc15 D CA CA . A CA 303 1_555 J O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc16 D CA CA . A CA 303 1_555 J O HOH . A HOH 550 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 5FAF _atom_sites.fract_transf_matrix[1][1] 0.037893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 GOL A 1 302 1 GOL GOL . D 2 CA A 1 303 1 CA CA . E 3 GOL A 1 304 1 GOL GOL . F 3 GOL A 1 305 1 GOL GOL . G 4 CL A 1 306 1 CL CL . H 4 CL A 1 307 2 CL CL . I 5 ACT A 1 308 2 ACT ACT . J 6 HOH A 1 401 159 HOH HOH . J 6 HOH A 2 402 274 HOH HOH . J 6 HOH A 3 403 247 HOH HOH . J 6 HOH A 4 404 192 HOH HOH . J 6 HOH A 5 405 188 HOH HOH . J 6 HOH A 6 406 157 HOH HOH . J 6 HOH A 7 407 280 HOH HOH . J 6 HOH A 8 408 160 HOH HOH . J 6 HOH A 9 409 284 HOH HOH . J 6 HOH A 10 410 248 HOH HOH . J 6 HOH A 11 411 268 HOH HOH . J 6 HOH A 12 412 276 HOH HOH . J 6 HOH A 13 413 44 HOH HOH . J 6 HOH A 14 414 58 HOH HOH . J 6 HOH A 15 415 259 HOH HOH . J 6 HOH A 16 416 53 HOH HOH . J 6 HOH A 17 417 162 HOH HOH . J 6 HOH A 18 418 29 HOH HOH . J 6 HOH A 19 419 271 HOH HOH . J 6 HOH A 20 420 62 HOH HOH . J 6 HOH A 21 421 151 HOH HOH . J 6 HOH A 22 422 253 HOH HOH . J 6 HOH A 23 423 262 HOH HOH . J 6 HOH A 24 424 147 HOH HOH . J 6 HOH A 25 425 229 HOH HOH . J 6 HOH A 26 426 11 HOH HOH . J 6 HOH A 27 427 6 HOH HOH . J 6 HOH A 28 428 81 HOH HOH . J 6 HOH A 29 429 2 HOH HOH . J 6 HOH A 30 430 264 HOH HOH . J 6 HOH A 31 431 145 HOH HOH . J 6 HOH A 32 432 129 HOH HOH . J 6 HOH A 33 433 279 HOH HOH . J 6 HOH A 34 434 251 HOH HOH . J 6 HOH A 35 435 73 HOH HOH . J 6 HOH A 36 436 257 HOH HOH . J 6 HOH A 37 437 25 HOH HOH . J 6 HOH A 38 438 75 HOH HOH . J 6 HOH A 39 439 245 HOH HOH . J 6 HOH A 40 440 263 HOH HOH . J 6 HOH A 41 441 50 HOH HOH . J 6 HOH A 42 442 7 HOH HOH . J 6 HOH A 43 443 14 HOH HOH . J 6 HOH A 44 444 13 HOH HOH . J 6 HOH A 45 445 12 HOH HOH . J 6 HOH A 46 446 55 HOH HOH . J 6 HOH A 47 447 202 HOH HOH . J 6 HOH A 48 448 32 HOH HOH . J 6 HOH A 49 449 214 HOH HOH . J 6 HOH A 50 450 275 HOH HOH . J 6 HOH A 51 451 70 HOH HOH . J 6 HOH A 52 452 1 HOH HOH . J 6 HOH A 53 453 186 HOH HOH . J 6 HOH A 54 454 78 HOH HOH . J 6 HOH A 55 455 10 HOH HOH . J 6 HOH A 56 456 64 HOH HOH . J 6 HOH A 57 457 27 HOH HOH . J 6 HOH A 58 458 89 HOH HOH . J 6 HOH A 59 459 31 HOH HOH . J 6 HOH A 60 460 94 HOH HOH . J 6 HOH A 61 461 269 HOH HOH . J 6 HOH A 62 462 3 HOH HOH . J 6 HOH A 63 463 37 HOH HOH . J 6 HOH A 64 464 77 HOH HOH . J 6 HOH A 65 465 216 HOH HOH . J 6 HOH A 66 466 97 HOH HOH . J 6 HOH A 67 467 204 HOH HOH . J 6 HOH A 68 468 59 HOH HOH . J 6 HOH A 69 469 9 HOH HOH . J 6 HOH A 70 470 72 HOH HOH . J 6 HOH A 71 471 8 HOH HOH . J 6 HOH A 72 472 164 HOH HOH . J 6 HOH A 73 473 56 HOH HOH . J 6 HOH A 74 474 210 HOH HOH . J 6 HOH A 75 475 101 HOH HOH . J 6 HOH A 76 476 74 HOH HOH . J 6 HOH A 77 477 198 HOH HOH . J 6 HOH A 78 478 278 HOH HOH . J 6 HOH A 79 479 35 HOH HOH . J 6 HOH A 80 480 260 HOH HOH . J 6 HOH A 81 481 18 HOH HOH . J 6 HOH A 82 482 80 HOH HOH . J 6 HOH A 83 483 266 HOH HOH . J 6 HOH A 84 484 256 HOH HOH . J 6 HOH A 85 485 4 HOH HOH . J 6 HOH A 86 486 26 HOH HOH . J 6 HOH A 87 487 28 HOH HOH . J 6 HOH A 88 488 60 HOH HOH . J 6 HOH A 89 489 15 HOH HOH . J 6 HOH A 90 490 30 HOH HOH . J 6 HOH A 91 491 45 HOH HOH . J 6 HOH A 92 492 19 HOH HOH . J 6 HOH A 93 493 41 HOH HOH . J 6 HOH A 94 494 79 HOH HOH . J 6 HOH A 95 495 110 HOH HOH . J 6 HOH A 96 496 171 HOH HOH . J 6 HOH A 97 497 246 HOH HOH . J 6 HOH A 98 498 20 HOH HOH . J 6 HOH A 99 499 265 HOH HOH . J 6 HOH A 100 500 16 HOH HOH . J 6 HOH A 101 501 87 HOH HOH . J 6 HOH A 102 502 244 HOH HOH . J 6 HOH A 103 503 254 HOH HOH . J 6 HOH A 104 504 17 HOH HOH . J 6 HOH A 105 505 85 HOH HOH . J 6 HOH A 106 506 38 HOH HOH . J 6 HOH A 107 507 99 HOH HOH . J 6 HOH A 108 508 255 HOH HOH . J 6 HOH A 109 509 61 HOH HOH . J 6 HOH A 110 510 142 HOH HOH . J 6 HOH A 111 511 267 HOH HOH . J 6 HOH A 112 512 170 HOH HOH . J 6 HOH A 113 513 47 HOH HOH . J 6 HOH A 114 514 34 HOH HOH . J 6 HOH A 115 515 88 HOH HOH . J 6 HOH A 116 516 54 HOH HOH . J 6 HOH A 117 517 51 HOH HOH . J 6 HOH A 118 518 63 HOH HOH . J 6 HOH A 119 519 83 HOH HOH . J 6 HOH A 120 520 5 HOH HOH . J 6 HOH A 121 521 42 HOH HOH . J 6 HOH A 122 522 199 HOH HOH . J 6 HOH A 123 523 148 HOH HOH . J 6 HOH A 124 524 281 HOH HOH . J 6 HOH A 125 525 272 HOH HOH . J 6 HOH A 126 526 66 HOH HOH . J 6 HOH A 127 527 250 HOH HOH . J 6 HOH A 128 528 252 HOH HOH . J 6 HOH A 129 529 261 HOH HOH . J 6 HOH A 130 530 258 HOH HOH . J 6 HOH A 131 531 156 HOH HOH . J 6 HOH A 132 532 228 HOH HOH . J 6 HOH A 133 533 96 HOH HOH . J 6 HOH A 134 534 33 HOH HOH . J 6 HOH A 135 535 167 HOH HOH . J 6 HOH A 136 536 102 HOH HOH . J 6 HOH A 137 537 133 HOH HOH . J 6 HOH A 138 538 152 HOH HOH . J 6 HOH A 139 539 282 HOH HOH . J 6 HOH A 140 540 57 HOH HOH . J 6 HOH A 141 541 277 HOH HOH . J 6 HOH A 142 542 140 HOH HOH . J 6 HOH A 143 543 219 HOH HOH . J 6 HOH A 144 544 103 HOH HOH . J 6 HOH A 145 545 206 HOH HOH . J 6 HOH A 146 546 126 HOH HOH . J 6 HOH A 147 547 270 HOH HOH . J 6 HOH A 148 548 46 HOH HOH . J 6 HOH A 149 549 235 HOH HOH . J 6 HOH A 150 550 144 HOH HOH . J 6 HOH A 151 551 249 HOH HOH . J 6 HOH A 152 552 36 HOH HOH . J 6 HOH A 153 553 68 HOH HOH . J 6 HOH A 154 554 283 HOH HOH . J 6 HOH A 155 555 23 HOH HOH . J 6 HOH A 156 556 233 HOH HOH . J 6 HOH A 157 557 22 HOH HOH . J 6 HOH A 158 558 169 HOH HOH . J 6 HOH A 159 559 39 HOH HOH . J 6 HOH A 160 560 48 HOH HOH . J 6 HOH A 161 561 187 HOH HOH . J 6 HOH A 162 562 93 HOH HOH . J 6 HOH A 163 563 43 HOH HOH . J 6 HOH A 164 564 232 HOH HOH . J 6 HOH A 165 565 153 HOH HOH . J 6 HOH A 166 566 196 HOH HOH . J 6 HOH A 167 567 84 HOH HOH . J 6 HOH A 168 568 40 HOH HOH . J 6 HOH A 169 569 191 HOH HOH . J 6 HOH A 170 570 132 HOH HOH . J 6 HOH A 171 571 161 HOH HOH . J 6 HOH A 172 572 209 HOH HOH . J 6 HOH A 173 573 189 HOH HOH . J 6 HOH A 174 574 108 HOH HOH . J 6 HOH A 175 575 239 HOH HOH . J 6 HOH A 176 576 113 HOH HOH . J 6 HOH A 177 577 273 HOH HOH . J 6 HOH A 178 578 107 HOH HOH . J 6 HOH A 179 579 190 HOH HOH . J 6 HOH A 180 580 76 HOH HOH . J 6 HOH A 181 581 52 HOH HOH . J 6 HOH A 182 582 71 HOH HOH . J 6 HOH A 183 583 166 HOH HOH . J 6 HOH A 184 584 123 HOH HOH . J 6 HOH A 185 585 197 HOH HOH . J 6 HOH A 186 586 49 HOH HOH . J 6 HOH A 187 587 203 HOH HOH . J 6 HOH A 188 588 213 HOH HOH . J 6 HOH A 189 589 205 HOH HOH . J 6 HOH A 190 590 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 17.285 -12.005 -9.461 0.61 21.1 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . F 3 16.191 -12.731 -9.994 0.61 14.58 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . F 3 18.538 -12.248 -10.3 0.61 16.96 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . F 3 19.532 -11.619 -9.568 0.61 30.91 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . F 3 18.975 -13.684 -10.372 0.61 24.45 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . F 3 20.23 -14.032 -10.946 0.61 36.18 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #