data_5FAI # _model_server_result.job_id C_FHl4zLLF8pMyqQcM2tFg _model_server_result.datetime_utc '2024-12-26 22:40:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5FAI # _exptl.entry_id 5FAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FAI _cell.length_a 86.118 _cell.length_b 86.118 _cell.length_c 125.178 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 43.059 74.580376 20.863 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 297 n n N HN1 SAH sing 298 n n N HN2 SAH sing 299 n n CA CB SAH sing 300 n n CA C SAH sing 301 n n CA HA SAH sing 302 n n CB CG SAH sing 303 n n CB HB1 SAH sing 304 n n CB HB2 SAH sing 305 n n CG SD SAH sing 306 n n CG HG1 SAH sing 307 n n CG HG2 SAH sing 308 n n SD C5' SAH sing 309 n n C O SAH doub 310 n n C OXT SAH sing 311 n n OXT HXT SAH sing 312 n n C5' C4' SAH sing 313 n n C5' "H5'1" SAH sing 314 n n C5' "H5'2" SAH sing 315 n n C4' O4' SAH sing 316 n n C4' C3' SAH sing 317 n n C4' H4' SAH sing 318 n n O4' C1' SAH sing 319 n n C3' O3' SAH sing 320 n n C3' C2' SAH sing 321 n n C3' H3' SAH sing 322 n n O3' HO3' SAH sing 323 n n C2' O2' SAH sing 324 n n C2' C1' SAH sing 325 n n C2' H2' SAH sing 326 n n O2' HO2' SAH sing 327 n n C1' N9 SAH sing 328 n n C1' H1' SAH sing 329 n n N9 C8 SAH sing 330 n y N9 C4 SAH sing 331 n y C8 N7 SAH doub 332 n y C8 H8 SAH sing 333 n n N7 C5 SAH sing 334 n y C5 C6 SAH sing 335 n y C5 C4 SAH doub 336 n y C6 N6 SAH sing 337 n n C6 N1 SAH doub 338 n y N6 HN61 SAH sing 339 n n N6 HN62 SAH sing 340 n n N1 C2 SAH sing 341 n y C2 N3 SAH doub 342 n y C2 H2 SAH sing 343 n n N3 C4 SAH sing 344 n y # _atom_sites.entry_id 5FAI _atom_sites.fract_transf_matrix[1][1] 0.011612 _atom_sites.fract_transf_matrix[1][2] 0.006704 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 1 SAH SAH . C 3 CIT A 1 302 1 CIT CIT . D 3 CIT A 1 303 2 CIT CIT . E 4 UNX A 1 304 1000 UNX UNX . F 4 UNX A 1 305 1001 UNX UNX . G 4 UNX A 1 306 1002 UNX UNX . H 4 UNX A 1 307 1003 UNX UNX . I 4 UNX A 1 308 1004 UNX UNX . J 4 UNX A 1 309 1006 UNX UNX . K 4 UNX A 1 310 1007 UNX UNX . L 4 UNX A 1 311 1008 UNX UNX . M 4 UNX A 1 312 1009 UNX UNX . N 4 UNX A 1 313 1010 UNX UNX . O 4 UNX A 1 314 1011 UNX UNX . P 4 UNX A 1 315 1012 UNX UNX . Q 5 HOH A 1 401 88 HOH HOH . Q 5 HOH A 2 402 105 HOH HOH . Q 5 HOH A 3 403 122 HOH HOH . Q 5 HOH A 4 404 38 HOH HOH . Q 5 HOH A 5 405 43 HOH HOH . Q 5 HOH A 6 406 241 HOH HOH . Q 5 HOH A 7 407 128 HOH HOH . Q 5 HOH A 8 408 22 HOH HOH . Q 5 HOH A 9 409 230 HOH HOH . Q 5 HOH A 10 410 4 HOH HOH . Q 5 HOH A 11 411 85 HOH HOH . Q 5 HOH A 12 412 55 HOH HOH . Q 5 HOH A 13 413 14 HOH HOH . Q 5 HOH A 14 414 155 HOH HOH . Q 5 HOH A 15 415 35 HOH HOH . Q 5 HOH A 16 416 115 HOH HOH . Q 5 HOH A 17 417 47 HOH HOH . Q 5 HOH A 18 418 207 HOH HOH . Q 5 HOH A 19 419 3 HOH HOH . Q 5 HOH A 20 420 66 HOH HOH . Q 5 HOH A 21 421 97 HOH HOH . Q 5 HOH A 22 422 253 HOH HOH . Q 5 HOH A 23 423 223 HOH HOH . Q 5 HOH A 24 424 116 HOH HOH . Q 5 HOH A 25 425 201 HOH HOH . Q 5 HOH A 26 426 40 HOH HOH . Q 5 HOH A 27 427 25 HOH HOH . Q 5 HOH A 28 428 24 HOH HOH . Q 5 HOH A 29 429 56 HOH HOH . Q 5 HOH A 30 430 160 HOH HOH . Q 5 HOH A 31 431 34 HOH HOH . Q 5 HOH A 32 432 191 HOH HOH . Q 5 HOH A 33 433 101 HOH HOH . Q 5 HOH A 34 434 69 HOH HOH . Q 5 HOH A 35 435 62 HOH HOH . Q 5 HOH A 36 436 90 HOH HOH . Q 5 HOH A 37 437 199 HOH HOH . Q 5 HOH A 38 438 28 HOH HOH . Q 5 HOH A 39 439 9 HOH HOH . Q 5 HOH A 40 440 109 HOH HOH . Q 5 HOH A 41 441 10 HOH HOH . Q 5 HOH A 42 442 156 HOH HOH . Q 5 HOH A 43 443 82 HOH HOH . Q 5 HOH A 44 444 177 HOH HOH . Q 5 HOH A 45 445 157 HOH HOH . Q 5 HOH A 46 446 110 HOH HOH . Q 5 HOH A 47 447 211 HOH HOH . Q 5 HOH A 48 448 208 HOH HOH . Q 5 HOH A 49 449 147 HOH HOH . Q 5 HOH A 50 450 68 HOH HOH . Q 5 HOH A 51 451 33 HOH HOH . Q 5 HOH A 52 452 129 HOH HOH . Q 5 HOH A 53 453 119 HOH HOH . Q 5 HOH A 54 454 242 HOH HOH . Q 5 HOH A 55 455 41 HOH HOH . Q 5 HOH A 56 456 121 HOH HOH . Q 5 HOH A 57 457 248 HOH HOH . Q 5 HOH A 58 458 12 HOH HOH . Q 5 HOH A 59 459 75 HOH HOH . Q 5 HOH A 60 460 141 HOH HOH . Q 5 HOH A 61 461 7 HOH HOH . Q 5 HOH A 62 462 213 HOH HOH . Q 5 HOH A 63 463 17 HOH HOH . Q 5 HOH A 64 464 205 HOH HOH . Q 5 HOH A 65 465 193 HOH HOH . Q 5 HOH A 66 466 229 HOH HOH . Q 5 HOH A 67 467 21 HOH HOH . Q 5 HOH A 68 468 80 HOH HOH . Q 5 HOH A 69 469 59 HOH HOH . Q 5 HOH A 70 470 192 HOH HOH . Q 5 HOH A 71 471 106 HOH HOH . Q 5 HOH A 72 472 206 HOH HOH . Q 5 HOH A 73 473 164 HOH HOH . Q 5 HOH A 74 474 6 HOH HOH . Q 5 HOH A 75 475 29 HOH HOH . Q 5 HOH A 76 476 209 HOH HOH . Q 5 HOH A 77 477 1 HOH HOH . Q 5 HOH A 78 478 186 HOH HOH . Q 5 HOH A 79 479 118 HOH HOH . Q 5 HOH A 80 480 18 HOH HOH . Q 5 HOH A 81 481 51 HOH HOH . Q 5 HOH A 82 482 151 HOH HOH . Q 5 HOH A 83 483 23 HOH HOH . Q 5 HOH A 84 484 54 HOH HOH . Q 5 HOH A 85 485 159 HOH HOH . Q 5 HOH A 86 486 44 HOH HOH . Q 5 HOH A 87 487 224 HOH HOH . Q 5 HOH A 88 488 86 HOH HOH . Q 5 HOH A 89 489 53 HOH HOH . Q 5 HOH A 90 490 36 HOH HOH . Q 5 HOH A 91 491 50 HOH HOH . Q 5 HOH A 92 492 45 HOH HOH . Q 5 HOH A 93 493 48 HOH HOH . Q 5 HOH A 94 494 250 HOH HOH . Q 5 HOH A 95 495 246 HOH HOH . Q 5 HOH A 96 496 102 HOH HOH . Q 5 HOH A 97 497 32 HOH HOH . Q 5 HOH A 98 498 84 HOH HOH . Q 5 HOH A 99 499 49 HOH HOH . Q 5 HOH A 100 500 52 HOH HOH . Q 5 HOH A 101 501 173 HOH HOH . Q 5 HOH A 102 502 136 HOH HOH . Q 5 HOH A 103 503 124 HOH HOH . Q 5 HOH A 104 504 139 HOH HOH . Q 5 HOH A 105 505 108 HOH HOH . Q 5 HOH A 106 506 31 HOH HOH . Q 5 HOH A 107 507 245 HOH HOH . Q 5 HOH A 108 508 74 HOH HOH . Q 5 HOH A 109 509 233 HOH HOH . Q 5 HOH A 110 510 185 HOH HOH . Q 5 HOH A 111 511 120 HOH HOH . Q 5 HOH A 112 512 123 HOH HOH . Q 5 HOH A 113 513 252 HOH HOH . Q 5 HOH A 114 514 27 HOH HOH . Q 5 HOH A 115 515 127 HOH HOH . Q 5 HOH A 116 516 65 HOH HOH . Q 5 HOH A 117 517 67 HOH HOH . Q 5 HOH A 118 518 144 HOH HOH . Q 5 HOH A 119 519 188 HOH HOH . Q 5 HOH A 120 520 92 HOH HOH . Q 5 HOH A 121 521 100 HOH HOH . Q 5 HOH A 122 522 220 HOH HOH . Q 5 HOH A 123 523 96 HOH HOH . Q 5 HOH A 124 524 42 HOH HOH . Q 5 HOH A 125 525 222 HOH HOH . Q 5 HOH A 126 526 190 HOH HOH . Q 5 HOH A 127 527 113 HOH HOH . Q 5 HOH A 128 528 58 HOH HOH . Q 5 HOH A 129 529 187 HOH HOH . Q 5 HOH A 130 530 216 HOH HOH . Q 5 HOH A 131 531 249 HOH HOH . Q 5 HOH A 132 532 140 HOH HOH . Q 5 HOH A 133 533 183 HOH HOH . Q 5 HOH A 134 534 194 HOH HOH . Q 5 HOH A 135 535 247 HOH HOH . Q 5 HOH A 136 536 81 HOH HOH . Q 5 HOH A 137 537 70 HOH HOH . Q 5 HOH A 138 538 148 HOH HOH . Q 5 HOH A 139 539 114 HOH HOH . Q 5 HOH A 140 540 203 HOH HOH . Q 5 HOH A 141 541 235 HOH HOH . Q 5 HOH A 142 542 219 HOH HOH . Q 5 HOH A 143 543 244 HOH HOH . Q 5 HOH A 144 544 243 HOH HOH . Q 5 HOH A 145 545 225 HOH HOH . Q 5 HOH A 146 546 226 HOH HOH . Q 5 HOH A 147 547 184 HOH HOH . Q 5 HOH A 148 548 238 HOH HOH . Q 5 HOH A 149 549 107 HOH HOH . Q 5 HOH A 150 550 178 HOH HOH . Q 5 HOH A 151 551 210 HOH HOH . Q 5 HOH A 152 552 227 HOH HOH . Q 5 HOH A 153 553 133 HOH HOH . Q 5 HOH A 154 554 204 HOH HOH . Q 5 HOH A 155 555 76 HOH HOH . Q 5 HOH A 156 556 176 HOH HOH . Q 5 HOH A 157 557 228 HOH HOH . Q 5 HOH A 158 558 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . A . B 2 -21.38 48.494 16.028 0.5 18.5 ? N SAH 301 A 1 HETATM 2 N N SAH . B . B 2 -19.484 48.951 17.837 0.5 23.15 ? N SAH 301 A 1 HETATM 3 C CA SAH . A . B 2 -20.026 48.635 15.42 0.5 17.81 ? CA SAH 301 A 1 HETATM 4 C CA SAH . B . B 2 -19.1 48.865 16.403 0.5 22.29 ? CA SAH 301 A 1 HETATM 5 C CB SAH . A . B 2 -19.954 47.816 14.133 0.5 17.64 ? CB SAH 301 A 1 HETATM 6 C CB SAH . B . B 2 -20.062 47.928 15.676 0.5 21.82 ? CB SAH 301 A 1 HETATM 7 C CG SAH . A . B 2 -20.372 46.358 14.359 0.5 17.6 ? CG SAH 301 A 1 HETATM 8 C CG SAH . B . B 2 -19.901 46.483 16.133 0.5 21.28 ? CG SAH 301 A 1 HETATM 9 S SD SAH . A . B 2 -19.327 45.533 15.495 0.5 16.56 ? SD SAH 301 A 1 HETATM 10 S SD SAH . B . B 2 -18.297 45.853 15.761 0.5 20.98 ? SD SAH 301 A 1 HETATM 11 C C SAH . A . B 2 -19.734 50.08 15.113 0.5 17.91 ? C SAH 301 A 1 HETATM 12 C C SAH . B . B 2 -19.157 50.242 15.816 0.5 22.01 ? C SAH 301 A 1 HETATM 13 O O SAH . A . B 2 -18.892 50.374 14.249 0.5 15.48 ? O SAH 301 A 1 HETATM 14 O O SAH . B . B 2 -18.687 50.505 14.691 0.5 20.18 ? O SAH 301 A 1 HETATM 15 O OXT SAH . A . B 2 -20.336 51.003 15.715 0.5 17.79 ? OXT SAH 301 A 1 HETATM 16 O OXT SAH . B . B 2 -19.694 51.147 16.455 0.5 21.48 ? OXT SAH 301 A 1 HETATM 17 C C5' SAH . A . B 2 -17.737 46.078 14.973 0.5 16.77 ? C5' SAH 301 A 1 HETATM 18 C C5' SAH . B . B 2 -18.45 45.886 14.001 0.5 19.2 ? C5' SAH 301 A 1 HETATM 19 C C4' SAH . A . B 2 -17.269 45.291 13.754 0.5 16.56 ? C4' SAH 301 A 1 HETATM 20 C C4' SAH . B . B 2 -17.375 45.044 13.307 0.5 18.32 ? C4' SAH 301 A 1 HETATM 21 O O4' SAH . A . B 2 -15.897 45.583 13.493 0.5 16.43 ? O4' SAH 301 A 1 HETATM 22 O O4' SAH . B . B 2 -16.055 45.51 13.59 0.5 17.7 ? O4' SAH 301 A 1 HETATM 23 C C3' SAH . A . B 2 -17.377 43.781 13.933 0.5 16.58 ? C3' SAH 301 A 1 HETATM 24 C C3' SAH . B . B 2 -17.353 43.582 13.709 0.5 17.95 ? C3' SAH 301 A 1 HETATM 25 O O3' SAH . A . B 2 -18.561 43.254 13.332 0.5 15.82 ? O3' SAH 301 A 1 HETATM 26 O O3' SAH . B . B 2 -18.399 42.814 13.115 0.5 17.52 ? O3' SAH 301 A 1 HETATM 27 C C2' SAH . A . B 2 -16.114 43.246 13.293 0.5 16.77 ? C2' SAH 301 A 1 HETATM 28 C C2' SAH . B . B 2 -15.988 43.182 13.211 0.5 17.82 ? C2' SAH 301 A 1 HETATM 29 O O2' SAH . A . B 2 -16.328 42.98 11.892 0.5 16.54 ? O2' SAH 301 A 1 HETATM 30 O O2' SAH . B . B 2 -16.049 42.959 11.796 0.5 17.5 ? O2' SAH 301 A 1 HETATM 31 C C1' SAH . A . B 2 -15.126 44.385 13.445 0.5 17.05 ? C1' SAH 301 A 1 HETATM 32 C C1' SAH . B . B 2 -15.14 44.411 13.462 0.5 17.86 ? C1' SAH 301 A 1 HETATM 33 N N9 SAH . . . B 2 -14.303 44.296 14.682 1 17.9 ? N9 SAH 301 A 1 HETATM 34 C C8 SAH . . . B 2 -14.38 45.085 15.791 1 18.43 ? C8 SAH 301 A 1 HETATM 35 N N7 SAH . . . B 2 -13.451 44.747 16.708 1 19.47 ? N7 SAH 301 A 1 HETATM 36 C C5 SAH . . . B 2 -12.75 43.738 16.173 1 18.47 ? C5 SAH 301 A 1 HETATM 37 C C6 SAH . . . B 2 -11.628 42.915 16.594 1 19.68 ? C6 SAH 301 A 1 HETATM 38 N N6 SAH . . . B 2 -11.043 43.092 17.794 1 19.05 ? N6 SAH 301 A 1 HETATM 39 N N1 SAH . . . B 2 -11.188 41.963 15.725 1 19.89 ? N1 SAH 301 A 1 HETATM 40 C C2 SAH . . . B 2 -11.753 41.748 14.511 1 18.96 ? C2 SAH 301 A 1 HETATM 41 N N3 SAH . . . B 2 -12.787 42.479 14.071 1 19.09 ? N3 SAH 301 A 1 HETATM 42 C C4 SAH . . . B 2 -13.313 43.457 14.854 1 18.58 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #