data_5FAR
#
_model_server_result.job_id            mqljyZPNT-nxYvYQpjBvfg 
_model_server_result.datetime_utc      '2024-11-27 02:59:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5far 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":201}' 
#
_entry.id    5FAR 
#
_exptl.entry_id    5FAR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              165.153 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            9-METHYLGUANINE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.97 
_cell.angle_gamma         90 
_cell.entry_id            5FAR 
_cell.length_a            63.795 
_cell.length_b            138.209 
_cell.length_c            63.933 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FAR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,Q,R,S,T 1 1 
E,F,G,H,M,N,O,P,U,V,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 11 A ASP 8 1_555 A N MSE 12 A MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 A C MSE 12 A MSE 9 1_555 A N GLU 13 A GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 B C MSE 4 B MSE 1 1_555 B N ASP 5 B ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 B C ASP 11 B ASP 8 1_555 B N MSE 12 B MSE 9 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale5 B C ASP 11 B ASP 8 1_555 B N MSE 12 B MSE 9 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 B C MSE 12 B MSE 9 1_555 B N GLU 13 B GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 C C MSE 4 C MSE 1 1_555 C N ASP 5 C ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 C C ASP 11 C ASP 8 1_555 C N MSE 12 C MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale9 C C MSE 12 C MSE 9 1_555 C N GLU 13 C GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 D C MSE 4 D MSE 1 1_555 D N ASP 5 D ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale11 D C ASP 11 D ASP 8 1_555 D N MSE 12 D MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale12 D C MSE 12 D MSE 9 1_555 D N GLU 13 D GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale13 E C MSE 4 E MSE 1 1_555 E N ASP 5 E ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale14 E C ASP 11 E ASP 8 1_555 E N MSE 12 E MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale15 E C MSE 12 E MSE 9 1_555 E N GLU 13 E GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale16 F C MSE 4 F MSE 1 1_555 F N ASP 5 F ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale17 F C ASP 11 F ASP 8 1_555 F N MSE 12 F MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale18 F C MSE 12 F MSE 9 1_555 F N GLU 13 F GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale19 G C MSE 4 G MSE 1 1_555 G N ASP 5 G ASP 2 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale20 G C MSE 4 G MSE 1 1_555 G N ASP 5 G ASP 2 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale21 G C ASP 11 G ASP 8 1_555 G N MSE 12 G MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale22 G C MSE 12 G MSE 9 1_555 G N GLU 13 G GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale23 H C MSE 4 H MSE 1 1_555 H N ASP 5 H ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale24 H C ASP 11 H ASP 8 1_555 H N MSE 12 H MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale25 H C MSE 12 H MSE 9 1_555 H N GLU 13 H GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C6 H7 N5 O' 
_chem_comp.formula_weight    165.153 
_chem_comp.id                9MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              9-METHYLGUANINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N2 9MG sing 1 n n 
C1 H11 9MG sing 2 n n 
C1 H12 9MG sing 3 n n 
C1 H13 9MG sing 4 n n 
N2 C3 9MG sing 5 n y 
N2 C12 9MG sing 6 n y 
C3 N4 9MG doub 7 n y 
C3 H3 9MG sing 8 n n 
N4 C5 9MG sing 9 n y 
C5 C6 9MG sing 10 n y 
C5 C12 9MG doub 11 n y 
C6 O7 9MG sing 12 n n 
C6 N8 9MG doub 13 n y 
O7 HO7 9MG sing 14 n n 
N8 C9 9MG sing 15 n y 
C9 N10 9MG sing 16 n n 
C9 N11 9MG doub 17 n y 
N10 H101 9MG sing 18 n n 
N10 H102 9MG sing 19 n n 
N11 C12 9MG sing 20 n y 
#
_atom_sites.entry_id                     5FAR 
_atom_sites.fract_transf_matrix[1][1]    0.015675 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.000007 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007235 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015641 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 9MG A 1 201 201 9MG 9MG . 
J 2 9MG B 1 201 201 9MG 9MG . 
K 2 9MG C 1 201 201 9MG 9MG . 
L 2 9MG C 1 202 201 9MG 9MG . 
M 2 9MG E 1 201 201 9MG 9MG . 
N 2 9MG F 1 201 201 9MG 9MG . 
O 2 9MG G 1 201 201 9MG 9MG . 
P 2 9MG H 1 201 201 9MG 9MG . 
Q 3 HOH A 1 301 111 HOH HOH . 
Q 3 HOH A 2 302 62 HOH HOH . 
Q 3 HOH A 3 303 59 HOH HOH . 
Q 3 HOH A 4 304 67 HOH HOH . 
Q 3 HOH A 5 305 80 HOH HOH . 
Q 3 HOH A 6 306 63 HOH HOH . 
Q 3 HOH A 7 307 9 HOH HOH . 
Q 3 HOH A 8 308 55 HOH HOH . 
Q 3 HOH A 9 309 3 HOH HOH . 
Q 3 HOH A 10 310 70 HOH HOH . 
R 3 HOH B 1 301 22 HOH HOH . 
R 3 HOH B 2 302 60 HOH HOH . 
R 3 HOH B 3 303 38 HOH HOH . 
R 3 HOH B 4 304 45 HOH HOH . 
R 3 HOH B 5 305 49 HOH HOH . 
R 3 HOH B 6 306 1 HOH HOH . 
R 3 HOH B 7 307 105 HOH HOH . 
R 3 HOH B 8 308 85 HOH HOH . 
R 3 HOH B 9 309 10 HOH HOH . 
R 3 HOH B 10 310 136 HOH HOH . 
R 3 HOH B 11 311 68 HOH HOH . 
R 3 HOH B 12 312 42 HOH HOH . 
R 3 HOH B 13 313 40 HOH HOH . 
R 3 HOH B 14 314 61 HOH HOH . 
R 3 HOH B 15 315 82 HOH HOH . 
R 3 HOH B 16 316 39 HOH HOH . 
R 3 HOH B 17 317 83 HOH HOH . 
S 3 HOH C 1 301 46 HOH HOH . 
S 3 HOH C 2 302 25 HOH HOH . 
S 3 HOH C 3 303 121 HOH HOH . 
S 3 HOH C 4 304 64 HOH HOH . 
S 3 HOH C 5 305 93 HOH HOH . 
S 3 HOH C 6 306 51 HOH HOH . 
S 3 HOH C 7 307 101 HOH HOH . 
S 3 HOH C 8 308 4 HOH HOH . 
S 3 HOH C 9 309 52 HOH HOH . 
S 3 HOH C 10 310 20 HOH HOH . 
S 3 HOH C 11 311 26 HOH HOH . 
S 3 HOH C 12 312 86 HOH HOH . 
S 3 HOH C 13 313 34 HOH HOH . 
S 3 HOH C 14 314 100 HOH HOH . 
S 3 HOH C 15 315 76 HOH HOH . 
S 3 HOH C 16 316 137 HOH HOH . 
S 3 HOH C 17 317 35 HOH HOH . 
S 3 HOH C 18 318 37 HOH HOH . 
S 3 HOH C 19 319 129 HOH HOH . 
S 3 HOH C 20 320 74 HOH HOH . 
T 3 HOH D 1 201 91 HOH HOH . 
T 3 HOH D 2 202 127 HOH HOH . 
T 3 HOH D 3 203 84 HOH HOH . 
T 3 HOH D 4 204 50 HOH HOH . 
T 3 HOH D 5 205 96 HOH HOH . 
T 3 HOH D 6 206 79 HOH HOH . 
U 3 HOH E 1 301 89 HOH HOH . 
U 3 HOH E 2 302 128 HOH HOH . 
U 3 HOH E 3 303 124 HOH HOH . 
U 3 HOH E 4 304 69 HOH HOH . 
U 3 HOH E 5 305 103 HOH HOH . 
U 3 HOH E 6 306 65 HOH HOH . 
U 3 HOH E 7 307 71 HOH HOH . 
U 3 HOH E 8 308 125 HOH HOH . 
U 3 HOH E 9 309 15 HOH HOH . 
U 3 HOH E 10 310 102 HOH HOH . 
U 3 HOH E 11 311 116 HOH HOH . 
U 3 HOH E 12 312 17 HOH HOH . 
U 3 HOH E 13 313 119 HOH HOH . 
U 3 HOH E 14 314 117 HOH HOH . 
U 3 HOH E 15 315 118 HOH HOH . 
V 3 HOH F 1 301 8 HOH HOH . 
V 3 HOH F 2 302 32 HOH HOH . 
V 3 HOH F 3 303 95 HOH HOH . 
V 3 HOH F 4 304 120 HOH HOH . 
V 3 HOH F 5 305 28 HOH HOH . 
V 3 HOH F 6 306 104 HOH HOH . 
V 3 HOH F 7 307 31 HOH HOH . 
V 3 HOH F 8 308 24 HOH HOH . 
V 3 HOH F 9 309 18 HOH HOH . 
V 3 HOH F 10 310 66 HOH HOH . 
V 3 HOH F 11 311 6 HOH HOH . 
V 3 HOH F 12 312 115 HOH HOH . 
V 3 HOH F 13 313 33 HOH HOH . 
V 3 HOH F 14 314 106 HOH HOH . 
V 3 HOH F 15 315 2 HOH HOH . 
V 3 HOH F 16 316 57 HOH HOH . 
V 3 HOH F 17 317 41 HOH HOH . 
V 3 HOH F 18 318 94 HOH HOH . 
V 3 HOH F 19 319 75 HOH HOH . 
V 3 HOH F 20 320 29 HOH HOH . 
V 3 HOH F 21 321 122 HOH HOH . 
V 3 HOH F 22 322 54 HOH HOH . 
V 3 HOH F 23 323 99 HOH HOH . 
V 3 HOH F 24 324 123 HOH HOH . 
V 3 HOH F 25 325 30 HOH HOH . 
V 3 HOH F 26 326 112 HOH HOH . 
W 3 HOH G 1 301 12 HOH HOH . 
W 3 HOH G 2 302 53 HOH HOH . 
W 3 HOH G 3 303 108 HOH HOH . 
W 3 HOH G 4 304 47 HOH HOH . 
W 3 HOH G 5 305 90 HOH HOH . 
W 3 HOH G 6 306 16 HOH HOH . 
W 3 HOH G 7 307 19 HOH HOH . 
W 3 HOH G 8 308 109 HOH HOH . 
W 3 HOH G 9 309 21 HOH HOH . 
W 3 HOH G 10 310 113 HOH HOH . 
W 3 HOH G 11 311 88 HOH HOH . 
W 3 HOH G 12 312 48 HOH HOH . 
W 3 HOH G 13 313 98 HOH HOH . 
W 3 HOH G 14 314 110 HOH HOH . 
W 3 HOH G 15 315 73 HOH HOH . 
W 3 HOH G 16 316 126 HOH HOH . 
W 3 HOH G 17 317 13 HOH HOH . 
W 3 HOH G 18 318 81 HOH HOH . 
W 3 HOH G 19 319 27 HOH HOH . 
W 3 HOH G 20 320 97 HOH HOH . 
W 3 HOH G 21 321 78 HOH HOH . 
W 3 HOH G 22 322 114 HOH HOH . 
W 3 HOH G 23 323 56 HOH HOH . 
X 3 HOH H 1 301 77 HOH HOH . 
X 3 HOH H 2 302 132 HOH HOH . 
X 3 HOH H 3 303 107 HOH HOH . 
X 3 HOH H 4 304 7 HOH HOH . 
X 3 HOH H 5 305 133 HOH HOH . 
X 3 HOH H 6 306 44 HOH HOH . 
X 3 HOH H 7 307 87 HOH HOH . 
X 3 HOH H 8 308 58 HOH HOH . 
X 3 HOH H 9 309 5 HOH HOH . 
X 3 HOH H 10 310 92 HOH HOH . 
X 3 HOH H 11 311 23 HOH HOH . 
X 3 HOH H 12 312 14 HOH HOH . 
X 3 HOH H 13 313 43 HOH HOH . 
X 3 HOH H 14 314 36 HOH HOH . 
X 3 HOH H 15 315 11 HOH HOH . 
X 3 HOH H 16 316 134 HOH HOH . 
X 3 HOH H 17 317 131 HOH HOH . 
X 3 HOH H 18 318 130 HOH HOH . 
X 3 HOH H 19 319 72 HOH HOH . 
X 3 HOH H 20 320 135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 9MG . . . I 2 -10.293 96.258 8.489 1 54.45 ? C1 9MG 201 A 1 
HETATM 2 N N2 9MG . . . I 2 -9.472 96.253 9.726 1 53.57 ? N2 9MG 201 A 1 
HETATM 3 C C3 9MG . . . I 2 -9.545 95.315 10.689 1 54.5 ? C3 9MG 201 A 1 
HETATM 4 N N4 9MG . . . I 2 -8.67 95.582 11.689 1 55.21 ? N4 9MG 201 A 1 
HETATM 5 C C5 9MG . . . I 2 -8.024 96.713 11.369 1 53.37 ? C5 9MG 201 A 1 
HETATM 6 C C6 9MG . . . I 2 -6.97 97.537 12.003 1 53.47 ? C6 9MG 201 A 1 
HETATM 7 O O7 9MG . . . I 2 -6.458 97.15 13.204 1 56.22 ? O7 9MG 201 A 1 
HETATM 8 N N8 9MG . . . I 2 -6.549 98.655 11.351 1 51.72 ? N8 9MG 201 A 1 
HETATM 9 C C9 9MG . . . I 2 -7.076 99.026 10.14 1 50.38 ? C9 9MG 201 A 1 
HETATM 10 N N10 9MG . . . I 2 -6.609 100.155 9.54 1 47.23 ? N10 9MG 201 A 1 
HETATM 11 N N11 9MG . . . I 2 -8.048 98.296 9.511 1 50.76 ? N11 9MG 201 A 1 
HETATM 12 C C12 9MG . . . I 2 -8.552 97.159 10.068 1 52.49 ? C12 9MG 201 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           50 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           12 
#