data_5FAR # _model_server_result.job_id JYfzXLkyUV6l_Y9yjqaYBA _model_server_result.datetime_utc '2024-11-23 11:03:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5far # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":201}' # _entry.id 5FAR # _exptl.entry_id 5FAR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.153 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-METHYLGUANINE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.97 _cell.angle_gamma 90 _cell.entry_id 5FAR _cell.length_a 63.795 _cell.length_b 138.209 _cell.length_c 63.933 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FAR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,Q,R,S,T 1 1 E,F,G,H,M,N,O,P,U,V,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 11 A ASP 8 1_555 A N MSE 12 A MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 12 A MSE 9 1_555 A N GLU 13 A GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 B C MSE 4 B MSE 1 1_555 B N ASP 5 B ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 B C ASP 11 B ASP 8 1_555 B N MSE 12 B MSE 9 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 B C ASP 11 B ASP 8 1_555 B N MSE 12 B MSE 9 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 B C MSE 12 B MSE 9 1_555 B N GLU 13 B GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 C C MSE 4 C MSE 1 1_555 C N ASP 5 C ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 C C ASP 11 C ASP 8 1_555 C N MSE 12 C MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 C C MSE 12 C MSE 9 1_555 C N GLU 13 C GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 D C MSE 4 D MSE 1 1_555 D N ASP 5 D ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 D C ASP 11 D ASP 8 1_555 D N MSE 12 D MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 D C MSE 12 D MSE 9 1_555 D N GLU 13 D GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 E C MSE 4 E MSE 1 1_555 E N ASP 5 E ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 E C ASP 11 E ASP 8 1_555 E N MSE 12 E MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale15 E C MSE 12 E MSE 9 1_555 E N GLU 13 E GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 F C MSE 4 F MSE 1 1_555 F N ASP 5 F ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale17 F C ASP 11 F ASP 8 1_555 F N MSE 12 F MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale18 F C MSE 12 F MSE 9 1_555 F N GLU 13 F GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 G C MSE 4 G MSE 1 1_555 G N ASP 5 G ASP 2 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale20 G C MSE 4 G MSE 1 1_555 G N ASP 5 G ASP 2 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale21 G C ASP 11 G ASP 8 1_555 G N MSE 12 G MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale22 G C MSE 12 G MSE 9 1_555 G N GLU 13 G GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale23 H C MSE 4 H MSE 1 1_555 H N ASP 5 H ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale24 H C ASP 11 H ASP 8 1_555 H N MSE 12 H MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale25 H C MSE 12 H MSE 9 1_555 H N GLU 13 H GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C6 H7 N5 O' _chem_comp.formula_weight 165.153 _chem_comp.id 9MG _chem_comp.mon_nstd_flag . _chem_comp.name 9-METHYLGUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 9MG sing 1 n n C1 H11 9MG sing 2 n n C1 H12 9MG sing 3 n n C1 H13 9MG sing 4 n n N2 C3 9MG sing 5 n y N2 C12 9MG sing 6 n y C3 N4 9MG doub 7 n y C3 H3 9MG sing 8 n n N4 C5 9MG sing 9 n y C5 C6 9MG sing 10 n y C5 C12 9MG doub 11 n y C6 O7 9MG sing 12 n n C6 N8 9MG doub 13 n y O7 HO7 9MG sing 14 n n N8 C9 9MG sing 15 n y C9 N10 9MG sing 16 n n C9 N11 9MG doub 17 n y N10 H101 9MG sing 18 n n N10 H102 9MG sing 19 n n N11 C12 9MG sing 20 n y # _atom_sites.entry_id 5FAR _atom_sites.fract_transf_matrix[1][1] 0.015675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000007 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 9MG A 1 201 201 9MG 9MG . J 2 9MG B 1 201 201 9MG 9MG . K 2 9MG C 1 201 201 9MG 9MG . L 2 9MG C 1 202 201 9MG 9MG . M 2 9MG E 1 201 201 9MG 9MG . N 2 9MG F 1 201 201 9MG 9MG . O 2 9MG G 1 201 201 9MG 9MG . P 2 9MG H 1 201 201 9MG 9MG . Q 3 HOH A 1 301 111 HOH HOH . Q 3 HOH A 2 302 62 HOH HOH . Q 3 HOH A 3 303 59 HOH HOH . Q 3 HOH A 4 304 67 HOH HOH . Q 3 HOH A 5 305 80 HOH HOH . Q 3 HOH A 6 306 63 HOH HOH . Q 3 HOH A 7 307 9 HOH HOH . Q 3 HOH A 8 308 55 HOH HOH . Q 3 HOH A 9 309 3 HOH HOH . Q 3 HOH A 10 310 70 HOH HOH . R 3 HOH B 1 301 22 HOH HOH . R 3 HOH B 2 302 60 HOH HOH . R 3 HOH B 3 303 38 HOH HOH . R 3 HOH B 4 304 45 HOH HOH . R 3 HOH B 5 305 49 HOH HOH . R 3 HOH B 6 306 1 HOH HOH . R 3 HOH B 7 307 105 HOH HOH . R 3 HOH B 8 308 85 HOH HOH . R 3 HOH B 9 309 10 HOH HOH . R 3 HOH B 10 310 136 HOH HOH . R 3 HOH B 11 311 68 HOH HOH . R 3 HOH B 12 312 42 HOH HOH . R 3 HOH B 13 313 40 HOH HOH . R 3 HOH B 14 314 61 HOH HOH . R 3 HOH B 15 315 82 HOH HOH . R 3 HOH B 16 316 39 HOH HOH . R 3 HOH B 17 317 83 HOH HOH . S 3 HOH C 1 301 46 HOH HOH . S 3 HOH C 2 302 25 HOH HOH . S 3 HOH C 3 303 121 HOH HOH . S 3 HOH C 4 304 64 HOH HOH . S 3 HOH C 5 305 93 HOH HOH . S 3 HOH C 6 306 51 HOH HOH . S 3 HOH C 7 307 101 HOH HOH . S 3 HOH C 8 308 4 HOH HOH . S 3 HOH C 9 309 52 HOH HOH . S 3 HOH C 10 310 20 HOH HOH . S 3 HOH C 11 311 26 HOH HOH . S 3 HOH C 12 312 86 HOH HOH . S 3 HOH C 13 313 34 HOH HOH . S 3 HOH C 14 314 100 HOH HOH . S 3 HOH C 15 315 76 HOH HOH . S 3 HOH C 16 316 137 HOH HOH . S 3 HOH C 17 317 35 HOH HOH . S 3 HOH C 18 318 37 HOH HOH . S 3 HOH C 19 319 129 HOH HOH . S 3 HOH C 20 320 74 HOH HOH . T 3 HOH D 1 201 91 HOH HOH . T 3 HOH D 2 202 127 HOH HOH . T 3 HOH D 3 203 84 HOH HOH . T 3 HOH D 4 204 50 HOH HOH . T 3 HOH D 5 205 96 HOH HOH . T 3 HOH D 6 206 79 HOH HOH . U 3 HOH E 1 301 89 HOH HOH . U 3 HOH E 2 302 128 HOH HOH . U 3 HOH E 3 303 124 HOH HOH . U 3 HOH E 4 304 69 HOH HOH . U 3 HOH E 5 305 103 HOH HOH . U 3 HOH E 6 306 65 HOH HOH . U 3 HOH E 7 307 71 HOH HOH . U 3 HOH E 8 308 125 HOH HOH . U 3 HOH E 9 309 15 HOH HOH . U 3 HOH E 10 310 102 HOH HOH . U 3 HOH E 11 311 116 HOH HOH . U 3 HOH E 12 312 17 HOH HOH . U 3 HOH E 13 313 119 HOH HOH . U 3 HOH E 14 314 117 HOH HOH . U 3 HOH E 15 315 118 HOH HOH . V 3 HOH F 1 301 8 HOH HOH . V 3 HOH F 2 302 32 HOH HOH . V 3 HOH F 3 303 95 HOH HOH . V 3 HOH F 4 304 120 HOH HOH . V 3 HOH F 5 305 28 HOH HOH . V 3 HOH F 6 306 104 HOH HOH . V 3 HOH F 7 307 31 HOH HOH . V 3 HOH F 8 308 24 HOH HOH . V 3 HOH F 9 309 18 HOH HOH . V 3 HOH F 10 310 66 HOH HOH . V 3 HOH F 11 311 6 HOH HOH . V 3 HOH F 12 312 115 HOH HOH . V 3 HOH F 13 313 33 HOH HOH . V 3 HOH F 14 314 106 HOH HOH . V 3 HOH F 15 315 2 HOH HOH . V 3 HOH F 16 316 57 HOH HOH . V 3 HOH F 17 317 41 HOH HOH . V 3 HOH F 18 318 94 HOH HOH . V 3 HOH F 19 319 75 HOH HOH . V 3 HOH F 20 320 29 HOH HOH . V 3 HOH F 21 321 122 HOH HOH . V 3 HOH F 22 322 54 HOH HOH . V 3 HOH F 23 323 99 HOH HOH . V 3 HOH F 24 324 123 HOH HOH . V 3 HOH F 25 325 30 HOH HOH . V 3 HOH F 26 326 112 HOH HOH . W 3 HOH G 1 301 12 HOH HOH . W 3 HOH G 2 302 53 HOH HOH . W 3 HOH G 3 303 108 HOH HOH . W 3 HOH G 4 304 47 HOH HOH . W 3 HOH G 5 305 90 HOH HOH . W 3 HOH G 6 306 16 HOH HOH . W 3 HOH G 7 307 19 HOH HOH . W 3 HOH G 8 308 109 HOH HOH . W 3 HOH G 9 309 21 HOH HOH . W 3 HOH G 10 310 113 HOH HOH . W 3 HOH G 11 311 88 HOH HOH . W 3 HOH G 12 312 48 HOH HOH . W 3 HOH G 13 313 98 HOH HOH . W 3 HOH G 14 314 110 HOH HOH . W 3 HOH G 15 315 73 HOH HOH . W 3 HOH G 16 316 126 HOH HOH . W 3 HOH G 17 317 13 HOH HOH . W 3 HOH G 18 318 81 HOH HOH . W 3 HOH G 19 319 27 HOH HOH . W 3 HOH G 20 320 97 HOH HOH . W 3 HOH G 21 321 78 HOH HOH . W 3 HOH G 22 322 114 HOH HOH . W 3 HOH G 23 323 56 HOH HOH . X 3 HOH H 1 301 77 HOH HOH . X 3 HOH H 2 302 132 HOH HOH . X 3 HOH H 3 303 107 HOH HOH . X 3 HOH H 4 304 7 HOH HOH . X 3 HOH H 5 305 133 HOH HOH . X 3 HOH H 6 306 44 HOH HOH . X 3 HOH H 7 307 87 HOH HOH . X 3 HOH H 8 308 58 HOH HOH . X 3 HOH H 9 309 5 HOH HOH . X 3 HOH H 10 310 92 HOH HOH . X 3 HOH H 11 311 23 HOH HOH . X 3 HOH H 12 312 14 HOH HOH . X 3 HOH H 13 313 43 HOH HOH . X 3 HOH H 14 314 36 HOH HOH . X 3 HOH H 15 315 11 HOH HOH . X 3 HOH H 16 316 134 HOH HOH . X 3 HOH H 17 317 131 HOH HOH . X 3 HOH H 18 318 130 HOH HOH . X 3 HOH H 19 319 72 HOH HOH . X 3 HOH H 20 320 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9MG . . . N 2 31.251 72.418 20.752 1 44.15 ? C1 9MG 201 F 1 HETATM 2 N N2 9MG . . . N 2 29.899 72.286 21.329 1 43.07 ? N2 9MG 201 F 1 HETATM 3 C C3 9MG . . . N 2 29.33 73.152 22.184 1 42.77 ? C3 9MG 201 F 1 HETATM 4 N N4 9MG . . . N 2 28.083 72.741 22.52 1 44.56 ? N4 9MG 201 F 1 HETATM 5 C C5 9MG . . . N 2 27.852 71.585 21.87 1 45.19 ? C5 9MG 201 F 1 HETATM 6 C C6 9MG . . . N 2 26.744 70.608 21.762 1 44.08 ? C6 9MG 201 F 1 HETATM 7 O O7 9MG . . . N 2 25.583 70.761 22.417 1 44.99 ? O7 9MG 201 F 1 HETATM 8 N N8 9MG . . . N 2 26.9 69.531 20.963 1 46.89 ? N8 9MG 201 F 1 HETATM 9 C C9 9MG . . . N 2 28.038 69.31 20.265 1 42.39 ? C9 9MG 201 F 1 HETATM 10 N N10 9MG . . . N 2 28.085 68.199 19.506 1 43.29 ? N10 9MG 201 F 1 HETATM 11 N N11 9MG . . . N 2 29.096 70.16 20.309 1 43.77 ? N11 9MG 201 F 1 HETATM 12 C C12 9MG . . . N 2 29.061 71.284 21.083 1 44.39 ? C12 9MG 201 F 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #