data_5FBH
#
_model_server_result.job_id            YmbDkj2cJtue3_oeJYCNFg 
_model_server_result.datetime_utc      '2024-11-14 06:38:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fbh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":602}' 
#
_entry.id    5FBH 
#
_exptl.entry_id    5FBH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.15 
_cell.angle_gamma         90 
_cell.entry_id            5FBH 
_cell.length_a            172.107 
_cell.length_b            83.106 
_cell.length_c            94.47 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FBH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 87 B CYS 60 1_555 A SG CYS 128 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf2 A SG CYS 385 B CYS 358 1_555 A SG CYS 422 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 A SG CYS 464 B CYS 437 1_555 A SG CYS 476 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf4 B SG CYS 87 A CYS 60 1_555 B SG CYS 128 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf5 B SG CYS 385 A CYS 358 1_555 B SG CYS 422 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 B SG CYS 464 A CYS 437 1_555 B SG CYS 476 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
covale ? covale1 A C ILE 262 B ILE 235 1_555 A N CSO 263 B CSO 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C CSO 263 B CSO 236 1_555 A N ILE 264 B ILE 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A ND2 ASN 288 B ASN 261 1_555 H C1 NAG . B NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale4 A ND2 ASN 314 B ASN 287 1_555 I C1 NAG . B NAG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale5 A ND2 ASN 495 B ASN 468 1_555 J C1 NAG . B NAG 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale6 A C GLU 508 B GLU 481 1_555 A N CSO 509 B CSO 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 A C CSO 509 B CSO 482 1_555 A N GLY 510 B GLY 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 B C ILE 262 A ILE 235 1_555 B N CSO 263 A CSO 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale9 B C CSO 263 A CSO 236 1_555 B N ILE 264 A ILE 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale10 B ND2 ASN 288 A ASN 261 1_555 P C1 NAG . A NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale11 B ND2 ASN 314 A ASN 287 1_555 Q C1 NAG . A NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale12 B ND2 ASN 495 A ASN 468 1_555 R C1 NAG . A NAG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? 
covale ? covale13 B C GLU 508 A GLU 481 1_555 B N CSO 509 A CSO 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale14 B C CSO 509 A CSO 482 1_555 B N GLY 510 A GLY 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale15 B ND2 ASN 515 A ASN 488 1_555 S C1 NAG . A NAG 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
metalc ? metalc1 A O ILE 108 B ILE 81 1_555 E MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? 
metalc ? metalc2 A O LEU 114 B LEU 87 1_555 E MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
metalc ? metalc3 A O LEU 115 B LEU 88 1_555 E MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc4 A OE1 GLU 256 B GLU 229 1_555 C GD GD3 . B GD3 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc5 A OE2 GLU 256 B GLU 229 1_555 C GD GD3 . B GD3 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc6 A OE1 GLU 259 B GLU 232 1_555 C GD GD3 . B GD3 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
metalc ? metalc7 A O SER 267 B SER 240 1_555 D MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc8 A OG SER 267 B SER 240 1_555 D MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc9 D MG MG . B MG 602 1_555 U O HOH . B HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc10 B O ILE 108 A ILE 81 1_555 M MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc11 B O SER 111 A SER 84 1_555 M MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? 
metalc ? metalc12 B O LEU 114 A LEU 87 1_555 M MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc13 B O LEU 115 A LEU 88 1_555 M MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
metalc ? metalc14 B OE1 GLU 256 A GLU 229 1_555 L GD GD3 . A GD3 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? 
metalc ? metalc15 B OE2 GLU 256 A GLU 229 1_555 L GD GD3 . A GD3 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? 
metalc ? metalc16 B OE1 GLU 259 A GLU 232 1_555 L GD GD3 . A GD3 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5FBH 
_atom_sites.fract_transf_matrix[1][1]    0.00581 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001573 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012033 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010967 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GD3 B 1 601 601 GD3 GD3 . 
D 3 MG B 1 602 602 MG MG . 
E 3 MG B 1 603 603 MG MG . 
F 4 BCT B 1 604 604 BCT BCT . 
G 5 CL B 1 605 605 CL CL . 
H 6 NAG B 1 606 606 NAG NAG . 
I 6 NAG B 1 607 607 NAG NAG . 
J 6 NAG B 1 608 608 NAG NAG . 
K 7 TCR B 1 609 609 TCR TCR . 
L 2 GD3 A 1 601 601 GD3 GD3 . 
M 3 MG A 1 602 602 MG MG . 
N 4 BCT A 1 603 603 BCT BCT . 
O 5 CL A 1 604 604 CL CL . 
P 6 NAG A 1 605 605 NAG NAG . 
Q 6 NAG A 1 606 606 NAG NAG . 
R 6 NAG A 1 607 607 NAG NAG . 
S 6 NAG A 1 608 608 NAG NAG . 
T 7 TCR A 1 609 609 TCR TCR . 
U 8 HOH B 1 701 701 HOH HOH . 
U 8 HOH B 2 702 702 HOH HOH . 
U 8 HOH B 3 703 703 HOH HOH . 
U 8 HOH B 4 704 704 HOH HOH . 
U 8 HOH B 5 705 705 HOH HOH . 
U 8 HOH B 6 706 706 HOH HOH . 
U 8 HOH B 7 707 707 HOH HOH . 
U 8 HOH B 8 708 708 HOH HOH . 
U 8 HOH B 9 709 709 HOH HOH . 
U 8 HOH B 10 710 710 HOH HOH . 
U 8 HOH B 11 711 711 HOH HOH . 
V 8 HOH A 1 701 701 HOH HOH . 
V 8 HOH A 2 702 702 HOH HOH . 
V 8 HOH A 3 703 703 HOH HOH . 
V 8 HOH A 4 704 704 HOH HOH . 
V 8 HOH A 5 705 705 HOH HOH . 
V 8 HOH A 6 706 706 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         M 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -21.766 
_atom_site.Cartn_y               -60.37 
_atom_site.Cartn_z               -1.936 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        95.13 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#