data_5FBJ
#
_model_server_result.job_id            pNUQ3cUm9TTNvFIk8MC-EQ 
_model_server_result.datetime_utc      '2025-01-12 18:57:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fbj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    5FBJ 
#
_exptl.entry_id    5FBJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              188.228 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-amino-5-[(N-methylcarbamimidoyl)amino]pentanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FBJ 
_cell.length_a            49.539 
_cell.length_b            65.052 
_cell.length_c            77.95 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FBJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 141 A HIS 321 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc2 A OD2 ASP 143 A ASP 323 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc3 A NE2 HIS 220 A HIS 400 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc4 B O2 AKG . A AKG 501 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc5 B O5 AKG . A AKG 501 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
#
_chem_comp.formula           'C7 H16 N4 O2' 
_chem_comp.formula_weight    188.228 
_chem_comp.id                NMM 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              '(2S)-2-amino-5-[(N-methylcarbamimidoyl)amino]pentanoic acid' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     L-NMMA 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA NH2 NMM sing 252 n n 
CAA HAA1 NMM sing 253 n n 
CAA HAA2 NMM sing 254 n n 
CAA HAA3 NMM sing 255 n n 
NH2 CZ NMM sing 256 n n 
NH2 HH2 NMM sing 257 n n 
CZ NH1 NMM doub 258 n n 
CZ NE NMM sing 259 n n 
NH1 HH1 NMM sing 260 n n 
NE CD NMM sing 261 n n 
NE HE NMM sing 262 n n 
CD CG NMM sing 263 n n 
CD HD3 NMM sing 264 n n 
CD HD2 NMM sing 265 n n 
CG CB NMM sing 266 n n 
CG HG3 NMM sing 267 n n 
CG HG2 NMM sing 268 n n 
CB CA NMM sing 269 n n 
CB HB3 NMM sing 270 n n 
CB HB2 NMM sing 271 n n 
CA C NMM sing 272 n n 
CA N NMM sing 273 n n 
CA HA NMM sing 274 n n 
C O NMM doub 275 n n 
C OXT NMM sing 276 n n 
OXT HXT NMM sing 277 n n 
N H NMM sing 278 n n 
N H2 NMM sing 279 n n 
#
_atom_sites.entry_id                     5FBJ 
_atom_sites.fract_transf_matrix[1][1]    0.020186 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015372 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012829 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AKG A 1 501 1 AKG AKG . 
C 3 NMM A 1 502 1 NMM NMM . 
D 4 ZN A 1 503 402 ZN ZN . 
E 5 HOH A 1 601 26 HOH HOH . 
E 5 HOH A 2 602 22 HOH HOH . 
E 5 HOH A 3 603 46 HOH HOH . 
E 5 HOH A 4 604 24 HOH HOH . 
E 5 HOH A 5 605 53 HOH HOH . 
E 5 HOH A 6 606 90 HOH HOH . 
E 5 HOH A 7 607 36 HOH HOH . 
E 5 HOH A 8 608 13 HOH HOH . 
E 5 HOH A 9 609 7 HOH HOH . 
E 5 HOH A 10 610 25 HOH HOH . 
E 5 HOH A 11 611 2 HOH HOH . 
E 5 HOH A 12 612 27 HOH HOH . 
E 5 HOH A 13 613 43 HOH HOH . 
E 5 HOH A 14 614 60 HOH HOH . 
E 5 HOH A 15 615 74 HOH HOH . 
E 5 HOH A 16 616 89 HOH HOH . 
E 5 HOH A 17 617 70 HOH HOH . 
E 5 HOH A 18 618 54 HOH HOH . 
E 5 HOH A 19 619 40 HOH HOH . 
E 5 HOH A 20 620 39 HOH HOH . 
E 5 HOH A 21 621 31 HOH HOH . 
E 5 HOH A 22 622 66 HOH HOH . 
E 5 HOH A 23 623 16 HOH HOH . 
E 5 HOH A 24 624 61 HOH HOH . 
E 5 HOH A 25 625 4 HOH HOH . 
E 5 HOH A 26 626 20 HOH HOH . 
E 5 HOH A 27 627 18 HOH HOH . 
E 5 HOH A 28 628 38 HOH HOH . 
E 5 HOH A 29 629 8 HOH HOH . 
E 5 HOH A 30 630 21 HOH HOH . 
E 5 HOH A 31 631 15 HOH HOH . 
E 5 HOH A 32 632 63 HOH HOH . 
E 5 HOH A 33 633 56 HOH HOH . 
E 5 HOH A 34 634 33 HOH HOH . 
E 5 HOH A 35 635 6 HOH HOH . 
E 5 HOH A 36 636 68 HOH HOH . 
E 5 HOH A 37 637 55 HOH HOH . 
E 5 HOH A 38 638 17 HOH HOH . 
E 5 HOH A 39 639 34 HOH HOH . 
E 5 HOH A 40 640 37 HOH HOH . 
E 5 HOH A 41 641 80 HOH HOH . 
E 5 HOH A 42 642 30 HOH HOH . 
E 5 HOH A 43 643 14 HOH HOH . 
E 5 HOH A 44 644 81 HOH HOH . 
E 5 HOH A 45 645 28 HOH HOH . 
E 5 HOH A 46 646 9 HOH HOH . 
E 5 HOH A 47 647 12 HOH HOH . 
E 5 HOH A 48 648 3 HOH HOH . 
E 5 HOH A 49 649 65 HOH HOH . 
E 5 HOH A 50 650 42 HOH HOH . 
E 5 HOH A 51 651 52 HOH HOH . 
E 5 HOH A 52 652 57 HOH HOH . 
E 5 HOH A 53 653 23 HOH HOH . 
E 5 HOH A 54 654 67 HOH HOH . 
E 5 HOH A 55 655 84 HOH HOH . 
E 5 HOH A 56 656 19 HOH HOH . 
E 5 HOH A 57 657 49 HOH HOH . 
E 5 HOH A 58 658 58 HOH HOH . 
E 5 HOH A 59 659 44 HOH HOH . 
E 5 HOH A 60 660 72 HOH HOH . 
E 5 HOH A 61 661 51 HOH HOH . 
E 5 HOH A 62 662 41 HOH HOH . 
E 5 HOH A 63 663 11 HOH HOH . 
E 5 HOH A 64 664 77 HOH HOH . 
E 5 HOH A 65 665 73 HOH HOH . 
E 5 HOH A 66 666 32 HOH HOH . 
E 5 HOH A 67 667 88 HOH HOH . 
E 5 HOH A 68 668 35 HOH HOH . 
E 5 HOH A 69 669 50 HOH HOH . 
E 5 HOH A 70 670 86 HOH HOH . 
E 5 HOH A 71 671 10 HOH HOH . 
E 5 HOH A 72 672 48 HOH HOH . 
E 5 HOH A 73 673 87 HOH HOH . 
E 5 HOH A 74 674 47 HOH HOH . 
E 5 HOH A 75 675 59 HOH HOH . 
E 5 HOH A 76 676 82 HOH HOH . 
E 5 HOH A 77 677 1 HOH HOH . 
E 5 HOH A 78 678 5 HOH HOH . 
E 5 HOH A 79 679 83 HOH HOH . 
E 5 HOH A 80 680 29 HOH HOH . 
E 5 HOH A 81 681 71 HOH HOH . 
E 5 HOH A 82 682 78 HOH HOH . 
E 5 HOH A 83 683 79 HOH HOH . 
E 5 HOH A 84 684 69 HOH HOH . 
E 5 HOH A 85 685 85 HOH HOH . 
E 5 HOH A 86 686 64 HOH HOH . 
E 5 HOH A 87 687 45 HOH HOH . 
E 5 HOH A 88 688 75 HOH HOH . 
E 5 HOH A 89 689 62 HOH HOH . 
E 5 HOH A 90 690 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA NMM . . . C 3 5.565 10.784 24.9 0.92 20.47 ? CAA NMM 502 A 1 
HETATM 2 N NH2 NMM . . . C 3 4.187 10.664 24.552 0.1 19.25 ? NH2 NMM 502 A 1 
HETATM 3 C CZ NMM . . . C 3 3.389 9.601 24.464 1 18.62 ? CZ NMM 502 A 1 
HETATM 4 N NH1 NMM . . . C 3 2.042 9.941 24.066 0.22 20.16 ? NH1 NMM 502 A 1 
HETATM 5 N NE NMM . . . C 3 3.654 8.18 24.692 0.69 20.01 ? NE NMM 502 A 1 
HETATM 6 C CD NMM . . . C 3 4.854 7.477 25.105 1 20.96 ? CD NMM 502 A 1 
HETATM 7 C CG NMM . . . C 3 5.2 7.85 26.553 0 22.71 ? CG NMM 502 A 1 
HETATM 8 C CB NMM . . . C 3 6.07 6.811 27.217 0.34 25.02 ? CB NMM 502 A 1 
HETATM 9 C CA NMM . . . C 3 7.5 7.25 27.631 0.45 22.33 ? CA NMM 502 A 1 
HETATM 10 C C NMM . . . C 3 7.981 8.506 26.909 0.48 21.97 ? C NMM 502 A 1 
HETATM 11 O O NMM . . . C 3 9.084 8.29 26.141 0.7 23.35 ? O NMM 502 A 1 
HETATM 12 O OXT NMM . . . C 3 7.554 9.659 26.954 0.58 23.26 ? OXT NMM 502 A 1 
HETATM 13 N N NMM . . . C 3 7.741 7.405 29.047 0.95 23.5 ? N NMM 502 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           878 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           13 
#