data_5FBS
#
_model_server_result.job_id            Nv1tMetodYapMdO7oUo_OA 
_model_server_result.datetime_utc      '2024-12-01 06:34:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fbs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":902}' 
#
_entry.id    5FBS 
#
_exptl.entry_id    5FBS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FBS 
_cell.length_a            58.51 
_cell.length_b            58.51 
_cell.length_c            601.86 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FBS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 297 A GLU 297 1_555 B MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? 
metalc ? metalc2 A OE2 GLU 297 A GLU 297 1_555 B MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc3 A OE1 GLN 309 A GLN 309 1_555 B MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc4 B MG MG . A MG 901 1_555 C O1B ADP . A ADP 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? 
metalc ? metalc5 B MG MG . A MG 901 1_555 C O3A ADP . A ADP 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     5FBS 
_atom_sites.fract_transf_matrix[1][1]    0.017091 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017091 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001662 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 901 901 MG MG . 
C 3 ADP A 1 902 902 ADP ADP . 
D 4 HOH A 1 1001 1001 HOH HOH . 
D 4 HOH A 2 1002 1002 HOH HOH . 
D 4 HOH A 3 1003 1003 HOH HOH . 
D 4 HOH A 4 1004 1004 HOH HOH . 
D 4 HOH A 5 1005 1005 HOH HOH . 
D 4 HOH A 6 1006 1006 HOH HOH . 
D 4 HOH A 7 1007 1007 HOH HOH . 
D 4 HOH A 8 1008 1008 HOH HOH . 
D 4 HOH A 9 1009 1009 HOH HOH . 
D 4 HOH A 10 1010 1010 HOH HOH . 
D 4 HOH A 11 1011 1011 HOH HOH . 
D 4 HOH A 12 1012 1012 HOH HOH . 
D 4 HOH A 13 1013 1013 HOH HOH . 
D 4 HOH A 14 1014 1014 HOH HOH . 
D 4 HOH A 15 1015 1015 HOH HOH . 
D 4 HOH A 16 1016 1016 HOH HOH . 
D 4 HOH A 17 1017 1017 HOH HOH . 
D 4 HOH A 18 1018 1018 HOH HOH . 
D 4 HOH A 19 1019 1019 HOH HOH . 
D 4 HOH A 20 1020 1020 HOH HOH . 
D 4 HOH A 21 1021 1021 HOH HOH . 
D 4 HOH A 22 1022 1022 HOH HOH . 
D 4 HOH A 23 1023 1023 HOH HOH . 
D 4 HOH A 24 1024 1024 HOH HOH . 
D 4 HOH A 25 1025 1025 HOH HOH . 
D 4 HOH A 26 1026 1026 HOH HOH . 
D 4 HOH A 27 1027 1027 HOH HOH . 
D 4 HOH A 28 1028 1028 HOH HOH . 
D 4 HOH A 29 1029 1029 HOH HOH . 
D 4 HOH A 30 1030 1030 HOH HOH . 
D 4 HOH A 31 1031 1031 HOH HOH . 
D 4 HOH A 32 1032 1032 HOH HOH . 
D 4 HOH A 33 1033 1033 HOH HOH . 
D 4 HOH A 34 1034 1034 HOH HOH . 
D 4 HOH A 35 1035 1035 HOH HOH . 
D 4 HOH A 36 1036 1036 HOH HOH . 
D 4 HOH A 37 1037 1037 HOH HOH . 
D 4 HOH A 38 1038 1038 HOH HOH . 
D 4 HOH A 39 1039 1039 HOH HOH . 
D 4 HOH A 40 1040 1040 HOH HOH . 
D 4 HOH A 41 1041 1041 HOH HOH . 
D 4 HOH A 42 1042 1042 HOH HOH . 
D 4 HOH A 43 1043 1043 HOH HOH . 
D 4 HOH A 44 1044 1044 HOH HOH . 
D 4 HOH A 45 1045 1045 HOH HOH . 
D 4 HOH A 46 1046 1046 HOH HOH . 
D 4 HOH A 47 1047 1047 HOH HOH . 
D 4 HOH A 48 1048 1048 HOH HOH . 
D 4 HOH A 49 1049 1049 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 -20.032 -7.314 62.587 1 81.6 ? PB ADP 902 A 1 
HETATM 2 O O1B ADP . . . C 3 -20.514 -7.362 61.157 1 85.6 ? O1B ADP 902 A 1 
HETATM 3 O O2B ADP . . . C 3 -19.235 -6.075 62.928 1 79.57 ? O2B ADP 902 A 1 
HETATM 4 O O3B ADP . . . C 3 -21.073 -7.689 63.614 1 80.4 ? O3B ADP 902 A 1 
HETATM 5 P PA ADP . . . C 3 -18.356 -8.858 64.135 1 59.98 ? PA ADP 902 A 1 
HETATM 6 O O1A ADP . . . C 3 -18.955 -10.133 64.673 1 60.75 ? O1A ADP 902 A 1 
HETATM 7 O O2A ADP . . . C 3 -18.447 -7.608 64.973 1 68.46 ? O2A ADP 902 A 1 
HETATM 8 O O3A ADP . . . C 3 -18.965 -8.511 62.689 1 242.92 ? O3A ADP 902 A 1 
HETATM 9 O O5' ADP . . . C 3 -16.799 -9.069 63.822 1 62.48 ? O5' ADP 902 A 1 
HETATM 10 C C5' ADP . . . C 3 -15.883 -8.102 64.326 1 58.44 ? C5' ADP 902 A 1 
HETATM 11 C C4' ADP . . . C 3 -14.48 -8.675 64.268 1 59.56 ? C4' ADP 902 A 1 
HETATM 12 O O4' ADP . . . C 3 -14.26 -9.506 65.406 1 59.29 ? O4' ADP 902 A 1 
HETATM 13 C C3' ADP . . . C 3 -14.283 -9.545 63.038 1 59.63 ? C3' ADP 902 A 1 
HETATM 14 O O3' ADP . . . C 3 -13.543 -8.84 62.039 1 64.31 ? O3' ADP 902 A 1 
HETATM 15 C C2' ADP . . . C 3 -13.504 -10.749 63.523 1 56.34 ? C2' ADP 902 A 1 
HETATM 16 O O2' ADP . . . C 3 -12.17 -10.706 63.01 1 58.32 ? O2' ADP 902 A 1 
HETATM 17 C C1' ADP . . . C 3 -13.467 -10.634 65.038 1 53.49 ? C1' ADP 902 A 1 
HETATM 18 N N9 ADP . . . C 3 -14.035 -11.867 65.628 1 47.93 ? N9 ADP 902 A 1 
HETATM 19 C C8 ADP . . . C 3 -15.337 -12.214 65.628 1 47.3 ? C8 ADP 902 A 1 
HETATM 20 N N7 ADP . . . C 3 -15.523 -13.41 66.244 1 42.63 ? N7 ADP 902 A 1 
HETATM 21 C C5 ADP . . . C 3 -14.314 -13.845 66.648 1 45.71 ? C5 ADP 902 A 1 
HETATM 22 C C6 ADP . . . C 3 -13.792 -15.033 67.36 1 45.67 ? C6 ADP 902 A 1 
HETATM 23 N N6 ADP . . . C 3 -14.627 -16.018 67.773 1 46.6 ? N6 ADP 902 A 1 
HETATM 24 N N1 ADP . . . C 3 -12.46 -15.099 67.582 1 42.33 ? N1 ADP 902 A 1 
HETATM 25 C C2 ADP . . . C 3 -11.623 -14.125 67.176 1 38.59 ? C2 ADP 902 A 1 
HETATM 26 N N3 ADP . . . C 3 -12.026 -13.02 66.524 1 37.73 ? N3 ADP 902 A 1 
HETATM 27 C C4 ADP . . . C 3 -13.336 -12.826 66.236 1 44.13 ? C4 ADP 902 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#