data_5FBW
#
_model_server_result.job_id            9sL6s7GJMkNOGI5pDTNYjg 
_model_server_result.datetime_utc      '2024-12-03 19:31:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fbw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    5FBW 
#
_exptl.entry_id    5FBW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              539.246 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FBW 
_cell.length_a            49.066 
_cell.length_b            104.091 
_cell.length_c            187.559 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FBW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3 S' 
_chem_comp.formula_weight    539.246 
_chem_comp.id                GSP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O3B GSP sing 195 n n 
PG S1G GSP doub 196 n n 
PG O2G GSP sing 197 n n 
PG O3G GSP sing 198 n n 
O3B PB GSP sing 199 n n 
O2G HOG2 GSP sing 200 n n 
O3G HOG3 GSP sing 201 n n 
PB O1B GSP doub 202 n n 
PB O2B GSP sing 203 n n 
PB O3A GSP sing 204 n n 
O2B HOB2 GSP sing 205 n n 
PA O1A GSP doub 206 n n 
PA O2A GSP sing 207 n n 
PA O3A GSP sing 208 n n 
PA O5' GSP sing 209 n n 
O2A HOA2 GSP sing 210 n n 
O5' C5' GSP sing 211 n n 
C5' C4' GSP sing 212 n n 
C5' "H5'1" GSP sing 213 n n 
C5' "H5'2" GSP sing 214 n n 
C4' O4' GSP sing 215 n n 
C4' C3' GSP sing 216 n n 
C4' H4' GSP sing 217 n n 
O4' C1' GSP sing 218 n n 
C3' O3' GSP sing 219 n n 
C3' C2' GSP sing 220 n n 
C3' H3' GSP sing 221 n n 
O3' HO3' GSP sing 222 n n 
C2' O2' GSP sing 223 n n 
C2' C1' GSP sing 224 n n 
C2' H2' GSP sing 225 n n 
O2' HO2' GSP sing 226 n n 
C1' N9 GSP sing 227 n n 
C1' H1' GSP sing 228 n n 
N9 C8 GSP sing 229 n y 
N9 C4 GSP sing 230 n y 
C8 N7 GSP doub 231 n y 
C8 H8 GSP sing 232 n n 
N7 C5 GSP sing 233 n y 
C5 C6 GSP sing 234 n n 
C5 C4 GSP doub 235 n y 
C6 O6 GSP doub 236 n n 
C6 N1 GSP sing 237 n n 
N1 C2 GSP sing 238 n n 
N1 HN1 GSP sing 239 n n 
C2 N2 GSP sing 240 n n 
C2 N3 GSP doub 241 n n 
N2 HN21 GSP sing 242 n n 
N2 HN22 GSP sing 243 n n 
N3 C4 GSP sing 244 n n 
#
_atom_sites.entry_id                     5FBW 
_atom_sites.fract_transf_matrix[1][1]    0.020381 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009607 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005332 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 5W8 A 1 801 1 5W8 369 . 
D 4 GSP B 1 301 1 GSP GSP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GSP . . . D 4 41.363 98.152 78.141 1 110.14 ? PG GSP 301 B 1 
HETATM 2 O O3B GSP . . . D 4 40.086 97.633 78.896 1 111.65 ? O3B GSP 301 B 1 
HETATM 3 S S1G GSP . . . D 4 41.868 96.831 76.792 1 129.93 ? S1G GSP 301 B 1 
HETATM 4 O O2G GSP . . . D 4 42.545 98.35 79.126 1 112.54 ? O2G GSP 301 B 1 
HETATM 5 O O3G GSP . . . D 4 41.027 99.52 77.422 1 123.5 ? O3G GSP 301 B 1 
HETATM 6 P PB GSP . . . D 4 38.671 97.469 78.18 1 108.88 ? PB GSP 301 B 1 
HETATM 7 O O1B GSP . . . D 4 38.854 97.652 76.683 1 121.24 ? O1B GSP 301 B 1 
HETATM 8 O O2B GSP . . . D 4 37.749 98.529 78.698 1 105.1 -1 O2B GSP 301 B 1 
HETATM 9 P PA GSP . . . D 4 38.655 94.904 79.375 1 127.17 ? PA GSP 301 B 1 
HETATM 10 O O1A GSP . . . D 4 38.152 93.546 78.983 1 123.89 -1 O1A GSP 301 B 1 
HETATM 11 O O2A GSP . . . D 4 40.159 94.913 79.285 1 127.4 ? O2A GSP 301 B 1 
HETATM 12 O O3A GSP . . . D 4 38.037 96.016 78.436 1 111.12 ? O3A GSP 301 B 1 
HETATM 13 O O5' GSP . . . D 4 38.189 95.236 80.87 1 125.09 ? O5' GSP 301 B 1 
HETATM 14 C C5' GSP . . . D 4 36.985 96.057 80.99 1 119.47 ? C5' GSP 301 B 1 
HETATM 15 C C4' GSP . . . D 4 36.44 95.932 82.396 1 114.67 ? C4' GSP 301 B 1 
HETATM 16 O O4' GSP . . . D 4 35.364 96.628 82.487 1 115.78 ? O4' GSP 301 B 1 
HETATM 17 C C3' GSP . . . D 4 36.055 94.348 82.728 1 118.72 ? C3' GSP 301 B 1 
HETATM 18 O O3' GSP . . . D 4 36.324 94.044 84.132 1 119.41 ? O3' GSP 301 B 1 
HETATM 19 C C2' GSP . . . D 4 34.844 94.234 82.492 1 119.05 ? C2' GSP 301 B 1 
HETATM 20 O O2' GSP . . . D 4 34.206 93.18 83.367 1 120.33 ? O2' GSP 301 B 1 
HETATM 21 C C1' GSP . . . D 4 34.268 95.652 82.883 1 115.49 ? C1' GSP 301 B 1 
HETATM 22 N N9 GSP . . . D 4 33.135 95.945 82.304 1 116.84 ? N9 GSP 301 B 1 
HETATM 23 C C8 GSP . . . D 4 33.403 96.124 80.979 1 120.03 ? C8 GSP 301 B 1 
HETATM 24 N N7 GSP . . . D 4 32.231 96.443 80.372 1 119.6 ? N7 GSP 301 B 1 
HETATM 25 C C5 GSP . . . D 4 31.251 96.475 81.321 1 116.46 ? C5 GSP 301 B 1 
HETATM 26 C C6 GSP . . . D 4 29.755 96.777 81.238 1 117.03 ? C6 GSP 301 B 1 
HETATM 27 O O6 GSP . . . D 4 29.248 97.048 80.176 1 120.46 ? O6 GSP 301 B 1 
HETATM 28 N N1 GSP . . . D 4 28.966 96.736 82.403 1 123.54 ? N1 GSP 301 B 1 
HETATM 29 C C2 GSP . . . D 4 29.568 96.412 83.654 1 123.31 ? C2 GSP 301 B 1 
HETATM 30 N N2 GSP . . . D 4 28.783 96.365 84.855 1 115.2 ? N2 GSP 301 B 1 
HETATM 31 N N3 GSP . . . D 4 31.009 96.124 83.726 1 120.24 ? N3 GSP 301 B 1 
HETATM 32 C C4 GSP . . . D 4 31.813 96.169 82.516 1 117.12 ? C4 GSP 301 B 1 
HETATM 33 H HOG2 GSP . . . D 4 43.171 98.889 78.745 1 135.05 ? HOG2 GSP 301 B 1 
HETATM 34 H HOG3 GSP . . . D 4 40.286 99.436 76.965 1 148.2 ? HOG3 GSP 301 B 1 
HETATM 35 H "H5'1" GSP . . . D 4 36.306 95.743 80.344 1 143.36 ? "H5'1" GSP 301 B 1 
HETATM 36 H "H5'2" GSP . . . D 4 37.207 96.994 80.804 1 143.36 ? "H5'2" GSP 301 B 1 
HETATM 37 H H4' GSP . . . D 4 37.102 96.258 83.042 1 137.6 ? H4' GSP 301 B 1 
HETATM 38 H H3' GSP . . . D 4 36.571 93.743 82.144 1 142.46 ? H3' GSP 301 B 1 
HETATM 39 H HO3' GSP . . . D 4 35.562 93.919 84.557 1 143.29 ? HO3' GSP 301 B 1 
HETATM 40 H H2' GSP . . . D 4 34.688 94.044 81.543 1 142.86 ? H2' GSP 301 B 1 
HETATM 41 H HO2' GSP . . . D 4 34.764 92.484 83.451 1 144.39 ? HO2' GSP 301 B 1 
HETATM 42 H H1' GSP . . . D 4 34.145 95.688 83.861 1 138.58 ? H1' GSP 301 B 1 
HETATM 43 H H8 GSP . . . D 4 34.286 96.025 80.539 1 144.04 ? H8 GSP 301 B 1 
HETATM 44 H HN1 GSP . . . D 4 28.058 96.915 82.355 1 148.25 ? HN1 GSP 301 B 1 
HETATM 45 H HN21 GSP . . . D 4 27.891 96.54 84.824 1 138.24 ? HN21 GSP 301 B 1 
HETATM 46 H HN22 GSP . . . D 4 29.181 96.156 85.657 1 138.24 ? HN22 GSP 301 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           56 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           46 
#