data_5FCK # _model_server_result.job_id eVF83ZU-ok5MkeeVXwixng _model_server_result.datetime_utc '2025-01-10 23:00:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5FCK # _exptl.entry_id 5FCK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 484.911 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[2-[(1~{R},3~{S},5~{R})-3-[[(1~{R})-1-(3-chloranyl-2-fluoranyl-phenyl)ethyl]carbamoyl]-2-azabicyclo[3.1.0]hexan-2-yl]-2-oxidanylidene-ethyl]pyrazolo[3,4-c]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.82 _cell.angle_gamma 90 _cell.entry_id 5FCK _cell.length_a 38.266 _cell.length_b 48.742 _cell.length_c 54.73 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 123 A CYS 136 1_555 A SG CYS 189 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 154 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf4 A SG CYS 179 A CYS 191 1_555 A SG CYS 204 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C23 H22 Cl F N6 O3' _chem_comp.formula_weight 484.911 _chem_comp.id 5WC _chem_comp.mon_nstd_flag . _chem_comp.name 1-[2-[(1~{R},3~{S},5~{R})-3-[[(1~{R})-1-(3-chloranyl-2-fluoranyl-phenyl)ethyl]carbamoyl]-2-azabicyclo[3.1.0]hexan-2-yl]-2-oxidanylidene-ethyl]pyrazolo[3,4-c]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C23 5WC doub 1 n y C22 N21 5WC sing 2 n y C23 C17 5WC sing 3 n y N21 C20 5WC doub 4 n y O26 C24 5WC doub 5 n n C17 C16 5WC doub 6 n y C17 C18 5WC sing 7 n y C20 C16 5WC sing 8 n y C24 C18 5WC sing 9 n n C24 N25 5WC sing 10 n n C16 N14 5WC sing 11 n y C18 N19 5WC doub 12 n y N14 N19 5WC sing 13 n y N14 C13 5WC sing 14 n n C13 C12 5WC sing 15 n n O15 C12 5WC doub 16 n n C12 N4 5WC sing 17 n n C30 C29 5WC doub 18 n y C30 C31 5WC sing 19 n y O8 C6 5WC doub 20 n n C29 C28 5WC sing 21 n y C31 C11 5WC doub 22 n y N4 C3 5WC sing 23 n n N4 C5 5WC sing 24 n n C3 C34 5WC sing 25 n n C3 C1 5WC sing 26 n n C6 C5 5WC sing 27 n n C6 N7 5WC sing 28 n n C28 C27 5WC doub 29 n y C28 CL 5WC sing 30 n n C11 C27 5WC sing 31 n y C11 C9 5WC sing 32 n n C5 C2 5WC sing 33 n n C34 C1 5WC sing 34 n n C1 C2 5WC sing 35 n n C27 F 5WC sing 36 n n C9 N7 5WC sing 37 n n C9 C10 5WC sing 38 n n C1 H1 5WC sing 39 n n C2 H2 5WC sing 40 n n C2 H3 5WC sing 41 n n C3 H4 5WC sing 42 n n C13 H5 5WC sing 43 n n C13 H6 5WC sing 44 n n C20 H7 5WC sing 45 n n C22 H8 5WC sing 46 n n C23 H9 5WC sing 47 n n C29 H10 5WC sing 48 n n C30 H11 5WC sing 49 n n C5 H12 5WC sing 50 n n N7 H13 5WC sing 51 n n C9 H14 5WC sing 52 n n C10 H15 5WC sing 53 n n C10 H16 5WC sing 54 n n C10 H17 5WC sing 55 n n N25 H18 5WC sing 56 n n N25 H19 5WC sing 57 n n C31 H20 5WC sing 58 n n C34 H21 5WC sing 59 n n C34 H22 5WC sing 60 n n # _atom_sites.entry_id 5FCK _atom_sites.fract_transf_matrix[1][1] 0.026133 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008905 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5WC A 1 301 1 5WC LI1 . C 3 SO4 A 1 302 1 SO4 SO4 . D 4 HOH A 1 401 11 HOH HOH . D 4 HOH A 2 402 90 HOH HOH . D 4 HOH A 3 403 85 HOH HOH . D 4 HOH A 4 404 78 HOH HOH . D 4 HOH A 5 405 61 HOH HOH . D 4 HOH A 6 406 81 HOH HOH . D 4 HOH A 7 407 19 HOH HOH . D 4 HOH A 8 408 21 HOH HOH . D 4 HOH A 9 409 83 HOH HOH . D 4 HOH A 10 410 32 HOH HOH . D 4 HOH A 11 411 6 HOH HOH . D 4 HOH A 12 412 45 HOH HOH . D 4 HOH A 13 413 70 HOH HOH . D 4 HOH A 14 414 24 HOH HOH . D 4 HOH A 15 415 8 HOH HOH . D 4 HOH A 16 416 1 HOH HOH . D 4 HOH A 17 417 82 HOH HOH . D 4 HOH A 18 418 79 HOH HOH . D 4 HOH A 19 419 86 HOH HOH . D 4 HOH A 20 420 13 HOH HOH . D 4 HOH A 21 421 4 HOH HOH . D 4 HOH A 22 422 15 HOH HOH . D 4 HOH A 23 423 62 HOH HOH . D 4 HOH A 24 424 22 HOH HOH . D 4 HOH A 25 425 68 HOH HOH . D 4 HOH A 26 426 56 HOH HOH . D 4 HOH A 27 427 54 HOH HOH . D 4 HOH A 28 428 29 HOH HOH . D 4 HOH A 29 429 37 HOH HOH . D 4 HOH A 30 430 89 HOH HOH . D 4 HOH A 31 431 59 HOH HOH . D 4 HOH A 32 432 23 HOH HOH . D 4 HOH A 33 433 50 HOH HOH . D 4 HOH A 34 434 51 HOH HOH . D 4 HOH A 35 435 31 HOH HOH . D 4 HOH A 36 436 27 HOH HOH . D 4 HOH A 37 437 10 HOH HOH . D 4 HOH A 38 438 2 HOH HOH . D 4 HOH A 39 439 42 HOH HOH . D 4 HOH A 40 440 41 HOH HOH . D 4 HOH A 41 441 58 HOH HOH . D 4 HOH A 42 442 47 HOH HOH . D 4 HOH A 43 443 46 HOH HOH . D 4 HOH A 44 444 18 HOH HOH . D 4 HOH A 45 445 17 HOH HOH . D 4 HOH A 46 446 26 HOH HOH . D 4 HOH A 47 447 57 HOH HOH . D 4 HOH A 48 448 3 HOH HOH . D 4 HOH A 49 449 14 HOH HOH . D 4 HOH A 50 450 20 HOH HOH . D 4 HOH A 51 451 49 HOH HOH . D 4 HOH A 52 452 28 HOH HOH . D 4 HOH A 53 453 77 HOH HOH . D 4 HOH A 54 454 38 HOH HOH . D 4 HOH A 55 455 88 HOH HOH . D 4 HOH A 56 456 60 HOH HOH . D 4 HOH A 57 457 7 HOH HOH . D 4 HOH A 58 458 43 HOH HOH . D 4 HOH A 59 459 55 HOH HOH . D 4 HOH A 60 460 16 HOH HOH . D 4 HOH A 61 461 52 HOH HOH . D 4 HOH A 62 462 48 HOH HOH . D 4 HOH A 63 463 72 HOH HOH . D 4 HOH A 64 464 36 HOH HOH . D 4 HOH A 65 465 5 HOH HOH . D 4 HOH A 66 466 12 HOH HOH . D 4 HOH A 67 467 64 HOH HOH . D 4 HOH A 68 468 71 HOH HOH . D 4 HOH A 69 469 9 HOH HOH . D 4 HOH A 70 470 35 HOH HOH . D 4 HOH A 71 471 25 HOH HOH . D 4 HOH A 72 472 33 HOH HOH . D 4 HOH A 73 473 87 HOH HOH . D 4 HOH A 74 474 39 HOH HOH . D 4 HOH A 75 475 73 HOH HOH . D 4 HOH A 76 476 80 HOH HOH . D 4 HOH A 77 477 34 HOH HOH . D 4 HOH A 78 478 69 HOH HOH . D 4 HOH A 79 479 53 HOH HOH . D 4 HOH A 80 480 63 HOH HOH . D 4 HOH A 81 481 40 HOH HOH . D 4 HOH A 82 482 75 HOH HOH . D 4 HOH A 83 483 84 HOH HOH . D 4 HOH A 84 484 67 HOH HOH . D 4 HOH A 85 485 76 HOH HOH . D 4 HOH A 86 486 44 HOH HOH . D 4 HOH A 87 487 30 HOH HOH . D 4 HOH A 88 488 66 HOH HOH . D 4 HOH A 89 489 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5WC . . . B 2 -2.084 -10.396 10.865 1 15.01 ? C1 5WC 301 A 1 HETATM 2 C C2 5WC . . . B 2 -0.699 -10.193 11.559 1 15.26 ? C2 5WC 301 A 1 HETATM 3 C C3 5WC . . . B 2 -2.026 -9.661 9.52 1 14.12 ? C3 5WC 301 A 1 HETATM 4 C C11 5WC . . . B 2 4.681 -10.956 10.448 1 13.96 ? C11 5WC 301 A 1 HETATM 5 C C12 5WC . . . B 2 -0.266 -8.317 8.534 1 14.69 ? C12 5WC 301 A 1 HETATM 6 C C13 5WC . . . B 2 -1.307 -7.998 7.522 1 14.11 ? C13 5WC 301 A 1 HETATM 7 C C16 5WC . . . B 2 -0.114 -7.279 5.441 1 14.7 ? C16 5WC 301 A 1 HETATM 8 C C17 5WC . . . B 2 0.179 -6.13 4.718 1 15.21 ? C17 5WC 301 A 1 HETATM 9 C C18 5WC . . . B 2 -0.458 -5.096 5.58 1 14.49 ? C18 5WC 301 A 1 HETATM 10 C C20 5WC . . . B 2 0.339 -8.575 5.004 1 15.74 ? C20 5WC 301 A 1 HETATM 11 C C22 5WC . . . B 2 1.368 -7.455 3.117 1 14.72 ? C22 5WC 301 A 1 HETATM 12 C C23 5WC . . . B 2 0.935 -6.148 3.508 1 14.41 ? C23 5WC 301 A 1 HETATM 13 C C24 5WC . . . B 2 -0.481 -3.674 5.261 1 13.7 ? C24 5WC 301 A 1 HETATM 14 C C27 5WC . . . B 2 5.311 -9.807 10.909 1 13.53 ? C27 5WC 301 A 1 HETATM 15 C C28 5WC . . . B 2 6.48 -9.365 10.355 1 14.96 ? C28 5WC 301 A 1 HETATM 16 C C29 5WC . . . B 2 7.107 -10.078 9.334 1 13.73 ? C29 5WC 301 A 1 HETATM 17 C C30 5WC . . . B 2 6.48 -11.225 8.85 1 15.12 ? C30 5WC 301 A 1 HETATM 18 N N4 5WC . . . B 2 -0.658 -9.137 9.516 1 14.11 ? N4 5WC 301 A 1 HETATM 19 C C5 5WC . . . B 2 0.255 -9.389 10.616 1 14.69 ? C5 5WC 301 A 1 HETATM 20 C C6 5WC . . . B 2 1.389 -10.334 10.27 1 13.62 ? C6 5WC 301 A 1 HETATM 21 N N7 5WC . . . B 2 2.31 -10.481 11.229 1 13.2 ? N7 5WC 301 A 1 HETATM 22 O O8 5WC . . . B 2 1.36 -10.949 9.225 1 13.52 ? O8 5WC 301 A 1 HETATM 23 C C9 5WC . . . B 2 3.399 -11.447 11.114 1 12.78 ? C9 5WC 301 A 1 HETATM 24 C C10 5WC . . . B 2 3.632 -11.949 12.584 1 12.88 ? C10 5WC 301 A 1 HETATM 25 N N14 5WC . . . B 2 -0.799 -6.984 6.589 1 15.61 ? N14 5WC 301 A 1 HETATM 26 O O15 5WC . . . B 2 0.855 -7.799 8.461 1 14.58 ? O15 5WC 301 A 1 HETATM 27 N N19 5WC . . . B 2 -1.06 -5.662 6.589 1 14.54 ? N19 5WC 301 A 1 HETATM 28 N N21 5WC . . . B 2 1.06 -8.593 3.844 1 14.66 ? N21 5WC 301 A 1 HETATM 29 N N25 5WC . . . B 2 -1.439 -2.852 5.835 1 13.31 ? N25 5WC 301 A 1 HETATM 30 O O26 5WC . . . B 2 0.324 -3.293 4.441 1 13.73 ? O26 5WC 301 A 1 HETATM 31 C C31 5WC . . . B 2 5.265 -11.694 9.416 1 13.92 ? C31 5WC 301 A 1 HETATM 32 F F 5WC . . . B 2 4.785 -9.114 11.909 1 13.34 ? F 5WC 301 A 1 HETATM 33 CL CL 5WC . . . B 2 7.179 -7.902 11.062 1 17.74 ? CL 5WC 301 A 1 HETATM 34 C C34 5WC . . . B 2 -2.924 -9.128 10.638 1 13.27 ? C34 5WC 301 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #