data_5FDD # _model_server_result.job_id 8cj3IS8SJnpz5dTOykOURQ _model_server_result.datetime_utc '2024-11-14 20:28:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fdd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5FDD # _exptl.entry_id 5FDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 291.687 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(2-chlorobenzyl)-2-hydroxy-3-nitrobenzaldehyde _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FDD _cell.length_a 66.397 _cell.length_b 66.397 _cell.length_c 127.392 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 93 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id MN _struct_conn.ptnr2_label_comp_id MN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MN _struct_conn.ptnr2_auth_seq_id 202 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.487 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H10 Cl N O4' _chem_comp.formula_weight 291.687 _chem_comp.id 4P8 _chem_comp.mon_nstd_flag . _chem_comp.name 5-(2-chlorobenzyl)-2-hydroxy-3-nitrobenzaldehyde _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAH CAB 4P8 sing 1 n n CAH CAI 4P8 sing 2 n n CAC CAB 4P8 doub 3 n y CAC CAD 4P8 sing 4 n y CAB CAA 4P8 sing 5 n y CAD CAE 4P8 doub 6 n y CAA CLG 4P8 sing 7 n n CAA CAF 4P8 doub 8 n y CAE CAF 4P8 sing 9 n y CAI CAK 4P8 doub 10 n y CAI CAJ 4P8 sing 11 n y CAK CAM 4P8 sing 12 n y CAJ CAL 4P8 doub 13 n y CAM CAO 4P8 sing 14 n n CAM CAN 4P8 doub 15 n y CAL CAN 4P8 sing 16 n y CAL NAR 4P8 sing 17 n n CAO OAP 4P8 doub 18 n n OAT NAR 4P8 sing 19 n n CAN OAQ 4P8 sing 20 n n NAR OAS 4P8 doub 21 n n CAO H1 4P8 sing 22 n n CAK H2 4P8 sing 23 n n OAQ H3 4P8 sing 24 n n CAJ H4 4P8 sing 25 n n CAH H5 4P8 sing 26 n n CAH H6 4P8 sing 27 n n CAF H7 4P8 sing 28 n n CAE H8 4P8 sing 29 n n CAD H9 4P8 sing 30 n n CAC H10 4P8 sing 31 n n # _atom_sites.entry_id 5FDD _atom_sites.fract_transf_matrix[1][1] 0.015061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4P8 A 1 201 1 4P8 DRG . C 3 MN A 1 202 1 MN MN . D 4 SO4 A 1 203 1 SO4 SO4 . E 5 HOH A 1 301 17 HOH HOH . E 5 HOH A 2 302 22 HOH HOH . E 5 HOH A 3 303 11 HOH HOH . E 5 HOH A 4 304 3 HOH HOH . E 5 HOH A 5 305 2 HOH HOH . E 5 HOH A 6 306 12 HOH HOH . E 5 HOH A 7 307 15 HOH HOH . E 5 HOH A 8 308 20 HOH HOH . E 5 HOH A 9 309 5 HOH HOH . E 5 HOH A 10 310 16 HOH HOH . E 5 HOH A 11 311 10 HOH HOH . E 5 HOH A 12 312 4 HOH HOH . E 5 HOH A 13 313 6 HOH HOH . E 5 HOH A 14 314 1 HOH HOH . E 5 HOH A 15 315 23 HOH HOH . E 5 HOH A 16 316 13 HOH HOH . E 5 HOH A 17 317 7 HOH HOH . E 5 HOH A 18 318 18 HOH HOH . E 5 HOH A 19 319 8 HOH HOH . E 5 HOH A 20 320 9 HOH HOH . E 5 HOH A 21 321 14 HOH HOH . E 5 HOH A 22 322 19 HOH HOH . E 5 HOH A 23 323 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAP 4P8 . . . B 2 0.3 -25.119 -17.161 1 90.91 ? OAP 4P8 201 A 1 HETATM 2 C CAO 4P8 . . . B 2 0.75 -25.667 -16.155 1 76.32 ? CAO 4P8 201 A 1 HETATM 3 C CAM 4P8 . . . B 2 0.242 -26.885 -15.713 1 86.31 ? CAM 4P8 201 A 1 HETATM 4 C CAK 4P8 . . . B 2 0.774 -27.511 -14.584 1 84.87 ? CAK 4P8 201 A 1 HETATM 5 C CAN 4P8 . . . B 2 -0.798 -27.509 -16.393 1 94.34 ? CAN 4P8 201 A 1 HETATM 6 O OAQ 4P8 . . . B 2 -1.325 -26.916 -17.503 1 91.85 ? OAQ 4P8 201 A 1 HETATM 7 C CAL 4P8 . . . B 2 -1.294 -28.737 -15.982 1 89.55 ? CAL 4P8 201 A 1 HETATM 8 N NAR 4P8 . . . B 2 -2.302 -29.257 -16.681 1 88.63 ? NAR 4P8 201 A 1 HETATM 9 O OAT 4P8 . . . B 2 -2.942 -28.434 -17.792 1 70.96 ? OAT 4P8 201 A 1 HETATM 10 O OAS 4P8 . . . B 2 -2.803 -30.488 -16.276 1 82.03 ? OAS 4P8 201 A 1 HETATM 11 C CAJ 4P8 . . . B 2 -0.773 -29.351 -14.844 1 85.95 ? CAJ 4P8 201 A 1 HETATM 12 C CAI 4P8 . . . B 2 0.274 -28.743 -14.146 1 94.07 ? CAI 4P8 201 A 1 HETATM 13 C CAH 4P8 . . . B 2 0.822 -29.35 -13.003 1 103.6 ? CAH 4P8 201 A 1 HETATM 14 C CAB 4P8 . . . B 2 1.401 -30.592 -13.297 1 102.67 ? CAB 4P8 201 A 1 HETATM 15 C CAA 4P8 . . . B 2 2.696 -30.668 -13.805 1 105.45 ? CAA 4P8 201 A 1 HETATM 16 CL CLG 4P8 . . . B 2 3.63 -29.225 -14.094 1 106.69 ? CLG 4P8 201 A 1 HETATM 17 C CAF 4P8 . . . B 2 3.254 -31.912 -14.09 1 106.2 ? CAF 4P8 201 A 1 HETATM 18 C CAE 4P8 . . . B 2 2.536 -33.083 -13.87 1 102.5 ? CAE 4P8 201 A 1 HETATM 19 C CAD 4P8 . . . B 2 1.246 -33.013 -13.359 1 98.28 ? CAD 4P8 201 A 1 HETATM 20 C CAC 4P8 . . . B 2 0.688 -31.77 -13.073 1 100.41 ? CAC 4P8 201 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #