data_5FDG # _model_server_result.job_id 6oD7EqbSBH5v2rfBmsv3Kw _model_server_result.datetime_utc '2024-11-14 12:47:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fdg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5FDG # _exptl.entry_id 5FDG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.894 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FDG _cell.length_a 66.438 _cell.length_b 66.438 _cell.length_c 126.977 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FDG _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 46 A HIS 46 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc2 A OE2 GLU 65 A GLU 65 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc3 A OD2 ASP 93 A ASP 93 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc4 A OD1 ASP 93 A ASP 93 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 A OE2 GLU 104 A GLU 104 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc6 A O ILE 105 A ILE 105 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc7 C MN MN . A MN 202 1_555 E O28 0N8 . A 0N8 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc8 C MN MN . A MN 202 1_555 E O25 0N8 . A 0N8 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc9 D MN MN . A MN 203 1_555 E O27 0N8 . A 0N8 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc10 D MN MN . A MN 203 1_555 E O28 0N8 . A 0N8 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc11 D MN MN . A MN 203 1_555 F O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc12 D MN MN . A MN 203 1_555 F O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? # _chem_comp.formula 'C23 H24 Cl N O4' _chem_comp.formula_weight 413.894 _chem_comp.id 0N8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 0N8 doub 1 n y C6 C5 0N8 sing 2 n y C1 C2 0N8 sing 3 n y O27 C14 0N8 doub 4 n n C12 C13 0N8 sing 5 n n C12 C11 0N8 sing 6 n n C5 C4 0N8 doub 7 n y C13 N8 0N8 sing 8 n n C2 C7 0N8 sing 9 n n C2 C3 0N8 doub 10 n y O28 C23 0N8 sing 11 n n C7 N8 0N8 sing 12 n n C15 C11 0N8 sing 13 n n C15 C16 0N8 sing 14 n n C14 C11 0N8 sing 15 n n C14 C22 0N8 sing 16 n n C11 C10 0N8 sing 17 n n N8 C9 0N8 sing 18 n n C4 C3 0N8 sing 19 n y C16 C21 0N8 doub 20 n y C16 C17 0N8 sing 21 n y C23 C22 0N8 doub 22 z n C23 C24 0N8 sing 23 n n C21 C20 0N8 sing 24 n y C17 C18 0N8 doub 25 n y O25 C24 0N8 doub 26 n n C10 C9 0N8 sing 27 n n C24 O26 0N8 sing 28 n n C20 C19 0N8 doub 29 n y C18 C19 0N8 sing 30 n y C19 CL2 0N8 sing 31 n n C18 H1 0N8 sing 32 n n C17 H2 0N8 sing 33 n n C20 H3 0N8 sing 34 n n C21 H4 0N8 sing 35 n n C15 H5 0N8 sing 36 n n C15 H6 0N8 sing 37 n n C10 H7 0N8 sing 38 n n C10 H8 0N8 sing 39 n n C9 H9 0N8 sing 40 n n C9 H10 0N8 sing 41 n n C22 H11 0N8 sing 42 n n O28 H14 0N8 sing 43 n n O26 H15 0N8 sing 44 n n C12 H16 0N8 sing 45 n n C12 H17 0N8 sing 46 n n C13 H18 0N8 sing 47 n n C13 H19 0N8 sing 48 n n C7 H21 0N8 sing 49 n n C7 H22 0N8 sing 50 n n C3 H23 0N8 sing 51 n n C4 H24 0N8 sing 52 n n C5 H25 0N8 sing 53 n n C6 H26 0N8 sing 54 n n C1 H27 0N8 sing 55 n n # _atom_sites.entry_id 5FDG _atom_sites.fract_transf_matrix[1][1] 0.015052 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 3 MN A 1 202 1 MN MN . D 3 MN A 1 203 2 MN MN . E 4 0N8 A 1 204 1 0N8 DRG . F 5 HOH A 1 301 46 HOH HOH . F 5 HOH A 2 302 95 HOH HOH . F 5 HOH A 3 303 39 HOH HOH . F 5 HOH A 4 304 45 HOH HOH . F 5 HOH A 5 305 21 HOH HOH . F 5 HOH A 6 306 82 HOH HOH . F 5 HOH A 7 307 41 HOH HOH . F 5 HOH A 8 308 59 HOH HOH . F 5 HOH A 9 309 61 HOH HOH . F 5 HOH A 10 310 24 HOH HOH . F 5 HOH A 11 311 25 HOH HOH . F 5 HOH A 12 312 2 HOH HOH . F 5 HOH A 13 313 7 HOH HOH . F 5 HOH A 14 314 37 HOH HOH . F 5 HOH A 15 315 30 HOH HOH . F 5 HOH A 16 316 40 HOH HOH . F 5 HOH A 17 317 9 HOH HOH . F 5 HOH A 18 318 64 HOH HOH . F 5 HOH A 19 319 38 HOH HOH . F 5 HOH A 20 320 49 HOH HOH . F 5 HOH A 21 321 15 HOH HOH . F 5 HOH A 22 322 70 HOH HOH . F 5 HOH A 23 323 18 HOH HOH . F 5 HOH A 24 324 77 HOH HOH . F 5 HOH A 25 325 75 HOH HOH . F 5 HOH A 26 326 20 HOH HOH . F 5 HOH A 27 327 1 HOH HOH . F 5 HOH A 28 328 51 HOH HOH . F 5 HOH A 29 329 29 HOH HOH . F 5 HOH A 30 330 23 HOH HOH . F 5 HOH A 31 331 42 HOH HOH . F 5 HOH A 32 332 44 HOH HOH . F 5 HOH A 33 333 73 HOH HOH . F 5 HOH A 34 334 35 HOH HOH . F 5 HOH A 35 335 19 HOH HOH . F 5 HOH A 36 336 8 HOH HOH . F 5 HOH A 37 337 66 HOH HOH . F 5 HOH A 38 338 78 HOH HOH . F 5 HOH A 39 339 36 HOH HOH . F 5 HOH A 40 340 14 HOH HOH . F 5 HOH A 41 341 10 HOH HOH . F 5 HOH A 42 342 6 HOH HOH . F 5 HOH A 43 343 22 HOH HOH . F 5 HOH A 44 344 16 HOH HOH . F 5 HOH A 45 345 13 HOH HOH . F 5 HOH A 46 346 99 HOH HOH . F 5 HOH A 47 347 43 HOH HOH . F 5 HOH A 48 348 76 HOH HOH . F 5 HOH A 49 349 52 HOH HOH . F 5 HOH A 50 350 11 HOH HOH . F 5 HOH A 51 351 96 HOH HOH . F 5 HOH A 52 352 83 HOH HOH . F 5 HOH A 53 353 17 HOH HOH . F 5 HOH A 54 354 32 HOH HOH . F 5 HOH A 55 355 12 HOH HOH . F 5 HOH A 56 356 47 HOH HOH . F 5 HOH A 57 357 65 HOH HOH . F 5 HOH A 58 358 26 HOH HOH . F 5 HOH A 59 359 4 HOH HOH . F 5 HOH A 60 360 34 HOH HOH . F 5 HOH A 61 361 55 HOH HOH . F 5 HOH A 62 362 5 HOH HOH . F 5 HOH A 63 363 84 HOH HOH . F 5 HOH A 64 364 71 HOH HOH . F 5 HOH A 65 365 28 HOH HOH . F 5 HOH A 66 366 27 HOH HOH . F 5 HOH A 67 367 79 HOH HOH . F 5 HOH A 68 368 62 HOH HOH . F 5 HOH A 69 369 3 HOH HOH . F 5 HOH A 70 370 89 HOH HOH . F 5 HOH A 71 371 90 HOH HOH . F 5 HOH A 72 372 69 HOH HOH . F 5 HOH A 73 373 72 HOH HOH . F 5 HOH A 74 374 81 HOH HOH . F 5 HOH A 75 375 97 HOH HOH . F 5 HOH A 76 376 87 HOH HOH . F 5 HOH A 77 377 93 HOH HOH . F 5 HOH A 78 378 50 HOH HOH . F 5 HOH A 79 379 58 HOH HOH . F 5 HOH A 80 380 80 HOH HOH . F 5 HOH A 81 381 91 HOH HOH . F 5 HOH A 82 382 74 HOH HOH . F 5 HOH A 83 383 48 HOH HOH . F 5 HOH A 84 384 54 HOH HOH . F 5 HOH A 85 385 88 HOH HOH . F 5 HOH A 86 386 33 HOH HOH . F 5 HOH A 87 387 60 HOH HOH . F 5 HOH A 88 388 68 HOH HOH . F 5 HOH A 89 389 67 HOH HOH . F 5 HOH A 90 390 85 HOH HOH . F 5 HOH A 91 391 31 HOH HOH . F 5 HOH A 92 392 98 HOH HOH . F 5 HOH A 93 393 86 HOH HOH . F 5 HOH A 94 394 94 HOH HOH . F 5 HOH A 95 395 92 HOH HOH . F 5 HOH A 96 396 57 HOH HOH . F 5 HOH A 97 397 53 HOH HOH . F 5 HOH A 98 398 56 HOH HOH . F 5 HOH A 99 399 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL2 0N8 . . . E 4 -1.423 30.049 20.724 1 70.01 ? CL2 0N8 204 A 1 HETATM 2 C C19 0N8 . . . E 4 -1.549 30.982 19.283 1 60.2 ? C19 0N8 204 A 1 HETATM 3 C C18 0N8 . . . E 4 -1.381 30.354 18.059 1 38.86 ? C18 0N8 204 A 1 HETATM 4 C C17 0N8 . . . E 4 -1.486 31.09 16.886 1 46.57 ? C17 0N8 204 A 1 HETATM 5 C C20 0N8 . . . E 4 -1.814 32.349 19.329 1 52.2 ? C20 0N8 204 A 1 HETATM 6 C C21 0N8 . . . E 4 -1.914 33.082 18.147 1 52.35 ? C21 0N8 204 A 1 HETATM 7 C C16 0N8 . . . E 4 -1.755 32.458 16.907 1 40.4 ? C16 0N8 204 A 1 HETATM 8 C C15 0N8 . . . E 4 -1.827 33.169 15.686 1 42.31 ? C15 0N8 204 A 1 HETATM 9 C C11 0N8 . . . E 4 -0.747 34.227 15.699 1 43.86 ? C11 0N8 204 A 1 HETATM 10 C C10 0N8 . . . E 4 -1.256 35.172 14.527 1 43.08 ? C10 0N8 204 A 1 HETATM 11 C C9 0N8 . . . E 4 -0.325 36.5 14.308 1 48.72 ? C9 0N8 204 A 1 HETATM 12 C C14 0N8 . . . E 4 0.305 33.215 15.182 1 49.26 ? C14 0N8 204 A 1 HETATM 13 O O27 0N8 . . . E 4 0.206 32.742 13.892 1 28.47 ? O27 0N8 204 A 1 HETATM 14 C C22 0N8 . . . E 4 1.314 32.552 16.126 1 33.62 ? C22 0N8 204 A 1 HETATM 15 C C23 0N8 . . . E 4 2.316 31.554 15.552 1 28.72 ? C23 0N8 204 A 1 HETATM 16 O O28 0N8 . . . E 4 2.239 31.058 14.425 1 26.35 ? O28 0N8 204 A 1 HETATM 17 C C24 0N8 . . . E 4 3.241 30.998 16.625 1 28.73 ? C24 0N8 204 A 1 HETATM 18 O O26 0N8 . . . E 4 3.193 31.524 17.756 1 43.1 ? O26 0N8 204 A 1 HETATM 19 O O25 0N8 . . . E 4 4.129 30.158 16.353 1 23.53 ? O25 0N8 204 A 1 HETATM 20 C C12 0N8 . . . E 4 -0.323 35.374 16.395 1 40.17 ? C12 0N8 204 A 1 HETATM 21 C C13 0N8 . . . E 4 1.049 35.759 15.543 1 35.05 ? C13 0N8 204 A 1 HETATM 22 N N8 0N8 . . . E 4 0.951 36.032 14.047 1 53.82 ? N8 0N8 204 A 1 HETATM 23 C C7 0N8 . . . E 4 2.344 36.427 13.731 1 59.09 ? C7 0N8 204 A 1 HETATM 24 C C2 0N8 . . . E 4 3.364 35.49 13.909 1 59.12 ? C2 0N8 204 A 1 HETATM 25 C C3 0N8 . . . E 4 4.289 35.724 14.936 1 63.44 ? C3 0N8 204 A 1 HETATM 26 C C4 0N8 . . . E 4 5.347 34.858 15.197 1 57.04 ? C4 0N8 204 A 1 HETATM 27 C C5 0N8 . . . E 4 5.502 33.74 14.396 1 44.53 ? C5 0N8 204 A 1 HETATM 28 C C6 0N8 . . . E 4 4.584 33.517 13.369 1 59.76 ? C6 0N8 204 A 1 HETATM 29 C C1 0N8 . . . E 4 3.516 34.375 13.1 1 46.79 ? C1 0N8 204 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #