data_5FDI # _model_server_result.job_id aK6kKdoNHQ5cwsO-_bv8LA _model_server_result.datetime_utc '2024-11-13 01:40:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fdi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5FDI # _exptl.entry_id 5FDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.317 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,1-bis(oxidanylidene)-3-[(sulfamoylamino)methyl]-1-benzothiophene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.16 _cell.angle_gamma 90 _cell.entry_id 5FDI _cell.length_a 42.006 _cell.length_b 41.282 _cell.length_c 71.981 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc4 A O GLN 136 A GLN 137 1_555 E HG HGB . A HGB 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc5 A O GLU 204 A GLU 205 1_555 E HG HGB . A HGB 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.151 ? metalc ? metalc6 B ZN ZN . A ZN 301 1_555 C N1 5WM . A 5WM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc7 E HG HGB . A HGB 304 1_555 F O HOH . A HOH 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? # _chem_comp.formula 'C9 H10 N2 O4 S2' _chem_comp.formula_weight 274.317 _chem_comp.id 5WM _chem_comp.mon_nstd_flag . _chem_comp.name 1,1-bis(oxidanylidene)-3-[(sulfamoylamino)methyl]-1-benzothiophene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C7 5WM doub 1 n y C6 C5 5WM sing 2 n y C7 C8 5WM sing 3 n y O4 S2 5WM doub 4 n n C5 C4 5WM doub 5 n y C8 S2 5WM sing 6 n n C8 C3 5WM doub 7 n y C4 C3 5WM sing 8 n y S2 O3 5WM doub 9 n n S2 C9 5WM sing 10 n n C3 C2 5WM sing 11 n n C2 C9 5WM doub 12 n n C2 C1 5WM sing 13 n n C1 N2 5WM sing 14 n n N2 S1 5WM sing 15 n n N1 S1 5WM sing 16 n n O1 S1 5WM doub 17 n n S1 O2 5WM doub 18 n n C1 H1 5WM sing 19 n n C1 H2 5WM sing 20 n n C4 H3 5WM sing 21 n n C5 H4 5WM sing 22 n n C6 H5 5WM sing 23 n n C7 H6 5WM sing 24 n n C9 H7 5WM sing 25 n n N1 H8 5WM sing 26 n n N1 H9 5WM sing 27 n n N2 H10 5WM sing 28 n n # _atom_sites.entry_id 5FDI _atom_sites.fract_transf_matrix[1][1] 0.023806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006006 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 5WM A 1 302 263 5WM F23 . D 4 GOL A 1 303 264 GOL GOL . E 5 HGB A 1 304 265 HGB HGB . F 6 HOH A 1 401 419 HOH HOH . F 6 HOH A 2 402 466 HOH HOH . F 6 HOH A 3 403 393 HOH HOH . F 6 HOH A 4 404 367 HOH HOH . F 6 HOH A 5 405 469 HOH HOH . F 6 HOH A 6 406 481 HOH HOH . F 6 HOH A 7 407 401 HOH HOH . F 6 HOH A 8 408 480 HOH HOH . F 6 HOH A 9 409 351 HOH HOH . F 6 HOH A 10 410 303 HOH HOH . F 6 HOH A 11 411 511 HOH HOH . F 6 HOH A 12 412 402 HOH HOH . F 6 HOH A 13 413 502 HOH HOH . F 6 HOH A 14 414 463 HOH HOH . F 6 HOH A 15 415 496 HOH HOH . F 6 HOH A 16 416 453 HOH HOH . F 6 HOH A 17 417 330 HOH HOH . F 6 HOH A 18 418 409 HOH HOH . F 6 HOH A 19 419 425 HOH HOH . F 6 HOH A 20 420 331 HOH HOH . F 6 HOH A 21 421 358 HOH HOH . F 6 HOH A 22 422 467 HOH HOH . F 6 HOH A 23 423 440 HOH HOH . F 6 HOH A 24 424 490 HOH HOH . F 6 HOH A 25 425 405 HOH HOH . F 6 HOH A 26 426 316 HOH HOH . F 6 HOH A 27 427 305 HOH HOH . F 6 HOH A 28 428 346 HOH HOH . F 6 HOH A 29 429 507 HOH HOH . F 6 HOH A 30 430 462 HOH HOH . F 6 HOH A 31 431 356 HOH HOH . F 6 HOH A 32 432 377 HOH HOH . F 6 HOH A 33 433 315 HOH HOH . F 6 HOH A 34 434 336 HOH HOH . F 6 HOH A 35 435 412 HOH HOH . F 6 HOH A 36 436 339 HOH HOH . F 6 HOH A 37 437 344 HOH HOH . F 6 HOH A 38 438 332 HOH HOH . F 6 HOH A 39 439 429 HOH HOH . F 6 HOH A 40 440 464 HOH HOH . F 6 HOH A 41 441 317 HOH HOH . F 6 HOH A 42 442 372 HOH HOH . F 6 HOH A 43 443 423 HOH HOH . F 6 HOH A 44 444 505 HOH HOH . F 6 HOH A 45 445 343 HOH HOH . F 6 HOH A 46 446 387 HOH HOH . F 6 HOH A 47 447 326 HOH HOH . F 6 HOH A 48 448 475 HOH HOH . F 6 HOH A 49 449 422 HOH HOH . F 6 HOH A 50 450 319 HOH HOH . F 6 HOH A 51 451 495 HOH HOH . F 6 HOH A 52 452 338 HOH HOH . F 6 HOH A 53 453 510 HOH HOH . F 6 HOH A 54 454 449 HOH HOH . F 6 HOH A 55 455 322 HOH HOH . F 6 HOH A 56 456 342 HOH HOH . F 6 HOH A 57 457 308 HOH HOH . F 6 HOH A 58 458 301 HOH HOH . F 6 HOH A 59 459 420 HOH HOH . F 6 HOH A 60 460 318 HOH HOH . F 6 HOH A 61 461 362 HOH HOH . F 6 HOH A 62 462 430 HOH HOH . F 6 HOH A 63 463 482 HOH HOH . F 6 HOH A 64 464 457 HOH HOH . F 6 HOH A 65 465 461 HOH HOH . F 6 HOH A 66 466 397 HOH HOH . F 6 HOH A 67 467 314 HOH HOH . F 6 HOH A 68 468 350 HOH HOH . F 6 HOH A 69 469 349 HOH HOH . F 6 HOH A 70 470 408 HOH HOH . F 6 HOH A 71 471 458 HOH HOH . F 6 HOH A 72 472 321 HOH HOH . F 6 HOH A 73 473 324 HOH HOH . F 6 HOH A 74 474 459 HOH HOH . F 6 HOH A 75 475 424 HOH HOH . F 6 HOH A 76 476 340 HOH HOH . F 6 HOH A 77 477 381 HOH HOH . F 6 HOH A 78 478 313 HOH HOH . F 6 HOH A 79 479 307 HOH HOH . F 6 HOH A 80 480 416 HOH HOH . F 6 HOH A 81 481 413 HOH HOH . F 6 HOH A 82 482 334 HOH HOH . F 6 HOH A 83 483 389 HOH HOH . F 6 HOH A 84 484 309 HOH HOH . F 6 HOH A 85 485 417 HOH HOH . F 6 HOH A 86 486 379 HOH HOH . F 6 HOH A 87 487 323 HOH HOH . F 6 HOH A 88 488 383 HOH HOH . F 6 HOH A 89 489 364 HOH HOH . F 6 HOH A 90 490 501 HOH HOH . F 6 HOH A 91 491 438 HOH HOH . F 6 HOH A 92 492 325 HOH HOH . F 6 HOH A 93 493 328 HOH HOH . F 6 HOH A 94 494 410 HOH HOH . F 6 HOH A 95 495 337 HOH HOH . F 6 HOH A 96 496 374 HOH HOH . F 6 HOH A 97 497 435 HOH HOH . F 6 HOH A 98 498 508 HOH HOH . F 6 HOH A 99 499 352 HOH HOH . F 6 HOH A 100 500 329 HOH HOH . F 6 HOH A 101 501 515 HOH HOH . F 6 HOH A 102 502 488 HOH HOH . F 6 HOH A 103 503 404 HOH HOH . F 6 HOH A 104 504 448 HOH HOH . F 6 HOH A 105 505 432 HOH HOH . F 6 HOH A 106 506 302 HOH HOH . F 6 HOH A 107 507 368 HOH HOH . F 6 HOH A 108 508 345 HOH HOH . F 6 HOH A 109 509 312 HOH HOH . F 6 HOH A 110 510 360 HOH HOH . F 6 HOH A 111 511 437 HOH HOH . F 6 HOH A 112 512 484 HOH HOH . F 6 HOH A 113 513 306 HOH HOH . F 6 HOH A 114 514 524 HOH HOH . F 6 HOH A 115 515 370 HOH HOH . F 6 HOH A 116 516 407 HOH HOH . F 6 HOH A 117 517 354 HOH HOH . F 6 HOH A 118 518 385 HOH HOH . F 6 HOH A 119 519 519 HOH HOH . F 6 HOH A 120 520 386 HOH HOH . F 6 HOH A 121 521 347 HOH HOH . F 6 HOH A 122 522 378 HOH HOH . F 6 HOH A 123 523 327 HOH HOH . F 6 HOH A 124 524 384 HOH HOH . F 6 HOH A 125 525 465 HOH HOH . F 6 HOH A 126 526 439 HOH HOH . F 6 HOH A 127 527 433 HOH HOH . F 6 HOH A 128 528 474 HOH HOH . F 6 HOH A 129 529 445 HOH HOH . F 6 HOH A 130 530 497 HOH HOH . F 6 HOH A 131 531 444 HOH HOH . F 6 HOH A 132 532 311 HOH HOH . F 6 HOH A 133 533 373 HOH HOH . F 6 HOH A 134 534 486 HOH HOH . F 6 HOH A 135 535 371 HOH HOH . F 6 HOH A 136 536 411 HOH HOH . F 6 HOH A 137 537 348 HOH HOH . F 6 HOH A 138 538 355 HOH HOH . F 6 HOH A 139 539 375 HOH HOH . F 6 HOH A 140 540 400 HOH HOH . F 6 HOH A 141 541 335 HOH HOH . F 6 HOH A 142 542 394 HOH HOH . F 6 HOH A 143 543 363 HOH HOH . F 6 HOH A 144 544 390 HOH HOH . F 6 HOH A 145 545 376 HOH HOH . F 6 HOH A 146 546 320 HOH HOH . F 6 HOH A 147 547 523 HOH HOH . F 6 HOH A 148 548 357 HOH HOH . F 6 HOH A 149 549 341 HOH HOH . F 6 HOH A 150 550 451 HOH HOH . F 6 HOH A 151 551 436 HOH HOH . F 6 HOH A 152 552 380 HOH HOH . F 6 HOH A 153 553 476 HOH HOH . F 6 HOH A 154 554 391 HOH HOH . F 6 HOH A 155 555 503 HOH HOH . F 6 HOH A 156 556 491 HOH HOH . F 6 HOH A 157 557 418 HOH HOH . F 6 HOH A 158 558 473 HOH HOH . F 6 HOH A 159 559 509 HOH HOH . F 6 HOH A 160 560 454 HOH HOH . F 6 HOH A 161 561 365 HOH HOH . F 6 HOH A 162 562 460 HOH HOH . F 6 HOH A 163 563 398 HOH HOH . F 6 HOH A 164 564 500 HOH HOH . F 6 HOH A 165 565 520 HOH HOH . F 6 HOH A 166 566 479 HOH HOH . F 6 HOH A 167 567 304 HOH HOH . F 6 HOH A 168 568 498 HOH HOH . F 6 HOH A 169 569 504 HOH HOH . F 6 HOH A 170 570 403 HOH HOH . F 6 HOH A 171 571 406 HOH HOH . F 6 HOH A 172 572 431 HOH HOH . F 6 HOH A 173 573 310 HOH HOH . F 6 HOH A 174 574 521 HOH HOH . F 6 HOH A 175 575 392 HOH HOH . F 6 HOH A 176 576 361 HOH HOH . F 6 HOH A 177 577 333 HOH HOH . F 6 HOH A 178 578 421 HOH HOH . F 6 HOH A 179 579 442 HOH HOH . F 6 HOH A 180 580 472 HOH HOH . F 6 HOH A 181 581 427 HOH HOH . F 6 HOH A 182 582 446 HOH HOH . F 6 HOH A 183 583 477 HOH HOH . F 6 HOH A 184 584 456 HOH HOH . F 6 HOH A 185 585 359 HOH HOH . F 6 HOH A 186 586 388 HOH HOH . F 6 HOH A 187 587 452 HOH HOH . F 6 HOH A 188 588 494 HOH HOH . F 6 HOH A 189 589 487 HOH HOH . F 6 HOH A 190 590 353 HOH HOH . F 6 HOH A 191 591 434 HOH HOH . F 6 HOH A 192 592 441 HOH HOH . F 6 HOH A 193 593 382 HOH HOH . F 6 HOH A 194 594 395 HOH HOH . F 6 HOH A 195 595 366 HOH HOH . F 6 HOH A 196 596 426 HOH HOH . F 6 HOH A 197 597 468 HOH HOH . F 6 HOH A 198 598 415 HOH HOH . F 6 HOH A 199 599 443 HOH HOH . F 6 HOH A 200 600 447 HOH HOH . F 6 HOH A 201 601 478 HOH HOH . F 6 HOH A 202 602 450 HOH HOH . F 6 HOH A 203 603 483 HOH HOH . F 6 HOH A 204 604 499 HOH HOH . F 6 HOH A 205 605 512 HOH HOH . F 6 HOH A 206 606 470 HOH HOH . F 6 HOH A 207 607 517 HOH HOH . F 6 HOH A 208 608 471 HOH HOH . F 6 HOH A 209 609 513 HOH HOH . F 6 HOH A 210 610 493 HOH HOH . F 6 HOH A 211 611 522 HOH HOH . F 6 HOH A 212 612 489 HOH HOH . F 6 HOH A 213 613 485 HOH HOH . F 6 HOH A 214 614 516 HOH HOH . F 6 HOH A 215 615 396 HOH HOH . F 6 HOH A 216 616 399 HOH HOH . F 6 HOH A 217 617 369 HOH HOH . F 6 HOH A 218 618 455 HOH HOH . F 6 HOH A 219 619 514 HOH HOH . F 6 HOH A 220 620 506 HOH HOH . F 6 HOH A 221 621 518 HOH HOH . F 6 HOH A 222 622 414 HOH HOH . F 6 HOH A 223 623 428 HOH HOH . F 6 HOH A 224 624 492 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 5WM . . . C 3 -6.868 1.087 16.302 1 18.6 ? O1 5WM 302 A 1 HETATM 2 O O2 5WM . . . C 3 -4.807 1.291 17.617 1 20.82 ? O2 5WM 302 A 1 HETATM 3 C C1 5WM . . . C 3 -5.585 3.1 14.696 1 34.67 ? C1 5WM 302 A 1 HETATM 4 C C2 5WM . . . C 3 -4.705 4.126 14.046 1 40.03 ? C2 5WM 302 A 1 HETATM 5 C C3 5WM . . . C 3 -5.29 5.236 13.233 1 43.21 ? C3 5WM 302 A 1 HETATM 6 C C4 5WM . . . C 3 -6.64 5.533 12.934 1 43.92 ? C4 5WM 302 A 1 HETATM 7 C C5 5WM . . . C 3 -6.96 6.65 12.127 1 45.29 ? C5 5WM 302 A 1 HETATM 8 C C6 5WM . . . C 3 -5.955 7.481 11.607 1 45.92 ? C6 5WM 302 A 1 HETATM 9 C C7 5WM . . . C 3 -4.586 7.216 11.888 1 46.28 ? C7 5WM 302 A 1 HETATM 10 C C8 5WM . . . C 3 -4.291 6.093 12.699 1 44.76 ? C8 5WM 302 A 1 HETATM 11 C C9 5WM . . . C 3 -3.387 4.162 14.112 1 43.16 ? C9 5WM 302 A 1 HETATM 12 S S1 5WM . . . C 3 -5.438 0.913 16.383 1 18.68 ? S1 5WM 302 A 1 HETATM 13 N N1 5WM . . . C 3 -5.065 -0.583 16.076 1 16.59 ? N1 5WM 302 A 1 HETATM 14 N N2 5WM . . . C 3 -4.818 1.868 15.166 1 26.2 ? N2 5WM 302 A 1 HETATM 15 S S2 5WM . . . C 3 -2.713 5.507 13.216 1 45.92 ? S2 5WM 302 A 1 HETATM 16 O O3 5WM . . . C 3 -2.114 6.47 14.11 1 44.21 ? O3 5WM 302 A 1 HETATM 17 O O4 5WM . . . C 3 -1.943 5.039 12.081 1 46.26 ? O4 5WM 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 17 #