data_5FDO
#
_model_server_result.job_id            3QVDMZe7EmcNuZIh08Te8A 
_model_server_result.datetime_utc      '2024-11-25 17:03:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fdo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":400}' 
#
_entry.id    5FDO 
#
_exptl.entry_id    5FDO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              497.006 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[3-(4-chloranyl-3,5-dimethyl-phenoxy)propyl]-~{N}-(phenylsulfonyl)-1~{H}-indole-2-carboxamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5FDO 
_cell.length_a            149.87 
_cell.length_b            149.87 
_cell.length_c            121.381 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FDO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,F 2 1 
C,G 3 1 
D,H 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C26 H25 Cl N2 O4 S' 
_chem_comp.formula_weight    497.006 
_chem_comp.id                5X2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[3-(4-chloranyl-3,5-dimethyl-phenoxy)propyl]-~{N}-(phenylsulfonyl)-1~{H}-indole-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C16 5X2 sing 1 n n 
C04 C03 5X2 doub 2 n y 
C04 C05 5X2 sing 3 n y 
C03 C02 5X2 sing 4 n y 
C30 C31 5X2 doub 5 n y 
C30 C29 5X2 sing 6 n y 
C05 C06 5X2 doub 7 n y 
C16 C18 5X2 doub 8 n y 
C16 C14 5X2 sing 9 n y 
C02 C01 5X2 doub 10 n y 
C18 C19 5X2 sing 11 n y 
C06 C01 5X2 sing 12 n y 
C06 C07 5X2 sing 13 n y 
C31 C32 5X2 sing 14 n y 
C01 N13 5X2 sing 15 n y 
CL1 C14 5X2 sing 16 n n 
C29 C34 5X2 doub 17 n y 
C14 C21 5X2 doub 18 n y 
C07 C08 5X2 sing 19 n n 
C07 C12 5X2 doub 20 n y 
N13 C12 5X2 sing 21 n y 
C08 C09 5X2 sing 22 n n 
C19 O11 5X2 sing 23 n n 
C19 C20 5X2 doub 24 n y 
C12 C23 5X2 sing 25 n n 
O11 C10 5X2 sing 26 n n 
C21 C20 5X2 sing 27 n y 
C21 C22 5X2 sing 28 n n 
C32 S26 5X2 sing 29 n n 
C32 C33 5X2 doub 30 n y 
N25 C23 5X2 sing 31 n n 
N25 S26 5X2 sing 32 n n 
C34 C33 5X2 sing 33 n y 
C23 O24 5X2 doub 34 n n 
C10 C09 5X2 sing 35 n n 
O27 S26 5X2 doub 36 n n 
S26 O28 5X2 doub 37 n n 
C10 H1 5X2 sing 38 n n 
C10 H2 5X2 sing 39 n n 
C17 H3 5X2 sing 40 n n 
C17 H4 5X2 sing 41 n n 
C17 H5 5X2 sing 42 n n 
C20 H6 5X2 sing 43 n n 
C22 H7 5X2 sing 44 n n 
C22 H8 5X2 sing 45 n n 
C22 H9 5X2 sing 46 n n 
C02 H10 5X2 sing 47 n n 
C03 H11 5X2 sing 48 n n 
C04 H12 5X2 sing 49 n n 
C05 H13 5X2 sing 50 n n 
C08 H14 5X2 sing 51 n n 
C08 H15 5X2 sing 52 n n 
C09 H16 5X2 sing 53 n n 
C09 H17 5X2 sing 54 n n 
N13 H18 5X2 sing 55 n n 
C18 H19 5X2 sing 56 n n 
N25 H20 5X2 sing 57 n n 
C29 H21 5X2 sing 58 n n 
C30 H22 5X2 sing 59 n n 
C31 H23 5X2 sing 60 n n 
C33 H24 5X2 sing 61 n n 
C34 H25 5X2 sing 62 n n 
#
_atom_sites.entry_id                     5FDO 
_atom_sites.fract_transf_matrix[1][1]    0.006672 
_atom_sites.fract_transf_matrix[1][2]    0.003852 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007705 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008239 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 5X2 A 1 400 400 5X2 LIG . 
F 2 5X2 B 1 400 400 5X2 LIG . 
G 2 5X2 C 1 400 400 5X2 LIG . 
H 2 5X2 D 1 400 400 5X2 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 5X2 . . . G 2 -34.194 56.425 -18.586 1 71.07 ? C10 5X2 400 C 1 
HETATM 2 C C17 5X2 . . . G 2 -31.06 60.584 -16.23 1 87.91 ? C17 5X2 400 C 1 
HETATM 3 C C20 5X2 . . . G 2 -35.279 58.9 -16.294 1 68.02 ? C20 5X2 400 C 1 
HETATM 4 C C21 5X2 . . . G 2 -35.047 60.307 -15.78 1 73.16 ? C21 5X2 400 C 1 
HETATM 5 C C22 5X2 . . . G 2 -36.195 61.179 -15.278 1 74.93 ? C22 5X2 400 C 1 
HETATM 6 C C01 5X2 . . . G 2 -34.771 57.204 -22.542 1 92.8 ? C01 5X2 400 C 1 
HETATM 7 C C02 5X2 . . . G 2 -35.423 58.474 -23.194 1 98.2 ? C02 5X2 400 C 1 
HETATM 8 C C03 5X2 . . . G 2 -34.982 59.852 -22.769 1 102.68 ? C03 5X2 400 C 1 
HETATM 9 C C04 5X2 . . . G 2 -33.929 60.002 -21.732 1 102.35 ? C04 5X2 400 C 1 
HETATM 10 C C05 5X2 . . . G 2 -33.313 58.775 -21.112 1 96.88 ? C05 5X2 400 C 1 
HETATM 11 C C06 5X2 . . . G 2 -33.784 57.348 -21.577 1 92.62 ? C06 5X2 400 C 1 
HETATM 12 C C07 5X2 . . . G 2 -33.393 56.108 -21.172 1 88.62 ? C07 5X2 400 C 1 
HETATM 13 C C08 5X2 . . . G 2 -32.323 55.81 -20.121 1 80.35 ? C08 5X2 400 C 1 
HETATM 14 C C09 5X2 . . . G 2 -32.939 55.573 -18.741 1 72.22 ? C09 5X2 400 C 1 
HETATM 15 O O11 5X2 . . . G 2 -34.407 56.721 -17.25 1 70.66 ? O11 5X2 400 C 1 
HETATM 16 C C12 5X2 . . . G 2 -34.154 55.197 -21.889 1 91.6 ? C12 5X2 400 C 1 
HETATM 17 N N13 5X2 . . . G 2 -34.985 55.868 -22.743 1 92.27 ? N13 5X2 400 C 1 
HETATM 18 C C14 5X2 . . . G 2 -33.633 60.843 -15.772 1 81.75 ? C14 5X2 400 C 1 
HETATM 19 CL CL1 5X2 . . . G 2 -33.372 62.494 -15.16 1 88.85 ? CL1 5X2 400 C 1 
HETATM 20 C C16 5X2 . . . G 2 -32.467 59.989 -16.27 1 82.48 ? C16 5X2 400 C 1 
HETATM 21 C C18 5X2 . . . G 2 -32.705 58.569 -16.793 1 72 ? C18 5X2 400 C 1 
HETATM 22 C C19 5X2 . . . G 2 -34.132 58.027 -16.81 1 71.12 ? C19 5X2 400 C 1 
HETATM 23 C C23 5X2 . . . G 2 -34.064 53.694 -21.857 1 89.86 ? C23 5X2 400 C 1 
HETATM 24 O O24 5X2 . . . G 2 -33.395 53.099 -21.08 1 87.85 ? O24 5X2 400 C 1 
HETATM 25 N N25 5X2 . . . G 2 -34.804 53.021 -22.892 1 93.22 ? N25 5X2 400 C 1 
HETATM 26 S S26 5X2 . . . G 2 -34.627 51.345 -22.917 1 91.13 ? S26 5X2 400 C 1 
HETATM 27 O O27 5X2 . . . G 2 -35.603 50.689 -23.791 1 96.43 ? O27 5X2 400 C 1 
HETATM 28 O O28 5X2 . . . G 2 -34.852 50.716 -21.614 1 96.2 ? O28 5X2 400 C 1 
HETATM 29 C C29 5X2 . . . G 2 -30.027 51.556 -24.634 1 70.64 ? C29 5X2 400 C 1 
HETATM 30 C C30 5X2 . . . G 2 -31.068 52.596 -25.046 1 71.71 ? C30 5X2 400 C 1 
HETATM 31 C C31 5X2 . . . G 2 -32.492 52.482 -24.477 1 79.98 ? C31 5X2 400 C 1 
HETATM 32 C C32 5X2 . . . G 2 -32.908 51.354 -23.52 1 84.46 ? C32 5X2 400 C 1 
HETATM 33 C C33 5X2 . . . G 2 -31.871 50.323 -23.095 1 77.96 ? C33 5X2 400 C 1 
HETATM 34 C C34 5X2 . . . G 2 -30.449 50.434 -23.666 1 79.25 ? C34 5X2 400 C 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           34 
#