data_5FDP # _model_server_result.job_id 7vrGKsQhzG2GpWBDnPzWrw _model_server_result.datetime_utc '2024-10-18 16:28:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fdp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1004}' # _entry.id 5FDP # _exptl.entry_id 5FDP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FDP _cell.length_a 45.3 _cell.length_b 63.15 _cell.length_c 107.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FDP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 156 n n C1 C2 EDO sing 157 n n C1 H11 EDO sing 158 n n C1 H12 EDO sing 159 n n O1 HO1 EDO sing 160 n n C2 O2 EDO sing 161 n n C2 H21 EDO sing 162 n n C2 H22 EDO sing 163 n n O2 HO2 EDO sing 164 n n # _atom_sites.entry_id 5FDP _atom_sites.fract_transf_matrix[1][1] 0.022075 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5WR A 1 1001 1 5WR DRG . C 3 PEG A 1 1002 1 PEG PEG . D 4 EDO A 1 1003 1 EDO EDO . E 4 EDO A 1 1004 2 EDO EDO . F 4 EDO A 1 1005 3 EDO EDO . G 4 EDO A 1 1006 4 EDO EDO . H 4 EDO A 1 1007 5 EDO EDO . I 5 HOH A 1 1101 10 HOH HOH . I 5 HOH A 2 1102 209 HOH HOH . I 5 HOH A 3 1103 125 HOH HOH . I 5 HOH A 4 1104 117 HOH HOH . I 5 HOH A 5 1105 11 HOH HOH . I 5 HOH A 6 1106 93 HOH HOH . I 5 HOH A 7 1107 39 HOH HOH . I 5 HOH A 8 1108 18 HOH HOH . I 5 HOH A 9 1109 17 HOH HOH . I 5 HOH A 10 1110 207 HOH HOH . I 5 HOH A 11 1111 20 HOH HOH . I 5 HOH A 12 1112 256 HOH HOH . I 5 HOH A 13 1113 91 HOH HOH . I 5 HOH A 14 1114 118 HOH HOH . I 5 HOH A 15 1115 57 HOH HOH . I 5 HOH A 16 1116 238 HOH HOH . I 5 HOH A 17 1117 219 HOH HOH . I 5 HOH A 18 1118 210 HOH HOH . I 5 HOH A 19 1119 170 HOH HOH . I 5 HOH A 20 1120 16 HOH HOH . I 5 HOH A 21 1121 111 HOH HOH . I 5 HOH A 22 1122 45 HOH HOH . I 5 HOH A 23 1123 114 HOH HOH . I 5 HOH A 24 1124 102 HOH HOH . I 5 HOH A 25 1125 26 HOH HOH . I 5 HOH A 26 1126 149 HOH HOH . I 5 HOH A 27 1127 237 HOH HOH . I 5 HOH A 28 1128 53 HOH HOH . I 5 HOH A 29 1129 73 HOH HOH . I 5 HOH A 30 1130 134 HOH HOH . I 5 HOH A 31 1131 135 HOH HOH . I 5 HOH A 32 1132 7 HOH HOH . I 5 HOH A 33 1133 248 HOH HOH . I 5 HOH A 34 1134 188 HOH HOH . I 5 HOH A 35 1135 243 HOH HOH . I 5 HOH A 36 1136 15 HOH HOH . I 5 HOH A 37 1137 211 HOH HOH . I 5 HOH A 38 1138 62 HOH HOH . I 5 HOH A 39 1139 127 HOH HOH . I 5 HOH A 40 1140 217 HOH HOH . I 5 HOH A 41 1141 246 HOH HOH . I 5 HOH A 42 1142 216 HOH HOH . I 5 HOH A 43 1143 120 HOH HOH . I 5 HOH A 44 1144 229 HOH HOH . I 5 HOH A 45 1145 236 HOH HOH . I 5 HOH A 46 1146 8 HOH HOH . I 5 HOH A 47 1147 40 HOH HOH . I 5 HOH A 48 1148 142 HOH HOH . I 5 HOH A 49 1149 75 HOH HOH . I 5 HOH A 50 1150 80 HOH HOH . I 5 HOH A 51 1151 89 HOH HOH . I 5 HOH A 52 1152 239 HOH HOH . I 5 HOH A 53 1153 64 HOH HOH . I 5 HOH A 54 1154 37 HOH HOH . I 5 HOH A 55 1155 58 HOH HOH . I 5 HOH A 56 1156 31 HOH HOH . I 5 HOH A 57 1157 51 HOH HOH . I 5 HOH A 58 1158 90 HOH HOH . I 5 HOH A 59 1159 137 HOH HOH . I 5 HOH A 60 1160 48 HOH HOH . I 5 HOH A 61 1161 130 HOH HOH . I 5 HOH A 62 1162 19 HOH HOH . I 5 HOH A 63 1163 234 HOH HOH . I 5 HOH A 64 1164 14 HOH HOH . I 5 HOH A 65 1165 33 HOH HOH . I 5 HOH A 66 1166 32 HOH HOH . I 5 HOH A 67 1167 25 HOH HOH . I 5 HOH A 68 1168 83 HOH HOH . I 5 HOH A 69 1169 257 HOH HOH . I 5 HOH A 70 1170 97 HOH HOH . I 5 HOH A 71 1171 59 HOH HOH . I 5 HOH A 72 1172 82 HOH HOH . I 5 HOH A 73 1173 86 HOH HOH . I 5 HOH A 74 1174 265 HOH HOH . I 5 HOH A 75 1175 177 HOH HOH . I 5 HOH A 76 1176 194 HOH HOH . I 5 HOH A 77 1177 164 HOH HOH . I 5 HOH A 78 1178 77 HOH HOH . I 5 HOH A 79 1179 116 HOH HOH . I 5 HOH A 80 1180 232 HOH HOH . I 5 HOH A 81 1181 267 HOH HOH . I 5 HOH A 82 1182 263 HOH HOH . I 5 HOH A 83 1183 60 HOH HOH . I 5 HOH A 84 1184 6 HOH HOH . I 5 HOH A 85 1185 55 HOH HOH . I 5 HOH A 86 1186 258 HOH HOH . I 5 HOH A 87 1187 5 HOH HOH . I 5 HOH A 88 1188 244 HOH HOH . I 5 HOH A 89 1189 2 HOH HOH . I 5 HOH A 90 1190 38 HOH HOH . I 5 HOH A 91 1191 1 HOH HOH . I 5 HOH A 92 1192 121 HOH HOH . I 5 HOH A 93 1193 193 HOH HOH . I 5 HOH A 94 1194 224 HOH HOH . I 5 HOH A 95 1195 208 HOH HOH . I 5 HOH A 96 1196 128 HOH HOH . I 5 HOH A 97 1197 204 HOH HOH . I 5 HOH A 98 1198 68 HOH HOH . I 5 HOH A 99 1199 71 HOH HOH . I 5 HOH A 100 1200 213 HOH HOH . I 5 HOH A 101 1201 74 HOH HOH . I 5 HOH A 102 1202 70 HOH HOH . I 5 HOH A 103 1203 182 HOH HOH . I 5 HOH A 104 1204 78 HOH HOH . I 5 HOH A 105 1205 23 HOH HOH . I 5 HOH A 106 1206 24 HOH HOH . I 5 HOH A 107 1207 198 HOH HOH . I 5 HOH A 108 1208 131 HOH HOH . I 5 HOH A 109 1209 22 HOH HOH . I 5 HOH A 110 1210 181 HOH HOH . I 5 HOH A 111 1211 144 HOH HOH . I 5 HOH A 112 1212 44 HOH HOH . I 5 HOH A 113 1213 221 HOH HOH . I 5 HOH A 114 1214 227 HOH HOH . I 5 HOH A 115 1215 196 HOH HOH . I 5 HOH A 116 1216 107 HOH HOH . I 5 HOH A 117 1217 220 HOH HOH . I 5 HOH A 118 1218 233 HOH HOH . I 5 HOH A 119 1219 260 HOH HOH . I 5 HOH A 120 1220 242 HOH HOH . I 5 HOH A 121 1221 199 HOH HOH . I 5 HOH A 122 1222 191 HOH HOH . I 5 HOH A 123 1223 87 HOH HOH . I 5 HOH A 124 1224 159 HOH HOH . I 5 HOH A 125 1225 268 HOH HOH . I 5 HOH A 126 1226 28 HOH HOH . I 5 HOH A 127 1227 212 HOH HOH . I 5 HOH A 128 1228 163 HOH HOH . I 5 HOH A 129 1229 46 HOH HOH . I 5 HOH A 130 1230 105 HOH HOH . I 5 HOH A 131 1231 251 HOH HOH . I 5 HOH A 132 1232 185 HOH HOH . I 5 HOH A 133 1233 202 HOH HOH . I 5 HOH A 134 1234 13 HOH HOH . I 5 HOH A 135 1235 141 HOH HOH . I 5 HOH A 136 1236 166 HOH HOH . I 5 HOH A 137 1237 112 HOH HOH . I 5 HOH A 138 1238 180 HOH HOH . I 5 HOH A 139 1239 88 HOH HOH . I 5 HOH A 140 1240 21 HOH HOH . I 5 HOH A 141 1241 66 HOH HOH . I 5 HOH A 142 1242 223 HOH HOH . I 5 HOH A 143 1243 95 HOH HOH . I 5 HOH A 144 1244 122 HOH HOH . I 5 HOH A 145 1245 158 HOH HOH . I 5 HOH A 146 1246 3 HOH HOH . I 5 HOH A 147 1247 100 HOH HOH . I 5 HOH A 148 1248 29 HOH HOH . I 5 HOH A 149 1249 132 HOH HOH . I 5 HOH A 150 1250 157 HOH HOH . I 5 HOH A 151 1251 108 HOH HOH . I 5 HOH A 152 1252 27 HOH HOH . I 5 HOH A 153 1253 119 HOH HOH . I 5 HOH A 154 1254 30 HOH HOH . I 5 HOH A 155 1255 12 HOH HOH . I 5 HOH A 156 1256 110 HOH HOH . I 5 HOH A 157 1257 225 HOH HOH . I 5 HOH A 158 1258 84 HOH HOH . I 5 HOH A 159 1259 98 HOH HOH . I 5 HOH A 160 1260 9 HOH HOH . I 5 HOH A 161 1261 203 HOH HOH . I 5 HOH A 162 1262 266 HOH HOH . I 5 HOH A 163 1263 168 HOH HOH . I 5 HOH A 164 1264 252 HOH HOH . I 5 HOH A 165 1265 218 HOH HOH . I 5 HOH A 166 1266 171 HOH HOH . I 5 HOH A 167 1267 230 HOH HOH . I 5 HOH A 168 1268 172 HOH HOH . I 5 HOH A 169 1269 50 HOH HOH . I 5 HOH A 170 1270 253 HOH HOH . I 5 HOH A 171 1271 214 HOH HOH . I 5 HOH A 172 1272 56 HOH HOH . I 5 HOH A 173 1273 147 HOH HOH . I 5 HOH A 174 1274 255 HOH HOH . I 5 HOH A 175 1275 124 HOH HOH . I 5 HOH A 176 1276 85 HOH HOH . I 5 HOH A 177 1277 109 HOH HOH . I 5 HOH A 178 1278 4 HOH HOH . I 5 HOH A 179 1279 99 HOH HOH . I 5 HOH A 180 1280 241 HOH HOH . I 5 HOH A 181 1281 61 HOH HOH . I 5 HOH A 182 1282 245 HOH HOH . I 5 HOH A 183 1283 52 HOH HOH . I 5 HOH A 184 1284 139 HOH HOH . I 5 HOH A 185 1285 162 HOH HOH . I 5 HOH A 186 1286 206 HOH HOH . I 5 HOH A 187 1287 271 HOH HOH . I 5 HOH A 188 1288 43 HOH HOH . I 5 HOH A 189 1289 123 HOH HOH . I 5 HOH A 190 1290 195 HOH HOH . I 5 HOH A 191 1291 67 HOH HOH . I 5 HOH A 192 1292 129 HOH HOH . I 5 HOH A 193 1293 226 HOH HOH . I 5 HOH A 194 1294 190 HOH HOH . I 5 HOH A 195 1295 269 HOH HOH . I 5 HOH A 196 1296 140 HOH HOH . I 5 HOH A 197 1297 169 HOH HOH . I 5 HOH A 198 1298 143 HOH HOH . I 5 HOH A 199 1299 215 HOH HOH . I 5 HOH A 200 1300 153 HOH HOH . I 5 HOH A 201 1301 222 HOH HOH . I 5 HOH A 202 1302 126 HOH HOH . I 5 HOH A 203 1303 103 HOH HOH . I 5 HOH A 204 1304 145 HOH HOH . I 5 HOH A 205 1305 270 HOH HOH . I 5 HOH A 206 1306 235 HOH HOH . I 5 HOH A 207 1307 184 HOH HOH . I 5 HOH A 208 1308 161 HOH HOH . I 5 HOH A 209 1309 187 HOH HOH . I 5 HOH A 210 1310 155 HOH HOH . I 5 HOH A 211 1311 179 HOH HOH . I 5 HOH A 212 1312 178 HOH HOH . I 5 HOH A 213 1313 35 HOH HOH . I 5 HOH A 214 1314 79 HOH HOH . I 5 HOH A 215 1315 259 HOH HOH . I 5 HOH A 216 1316 41 HOH HOH . I 5 HOH A 217 1317 49 HOH HOH . I 5 HOH A 218 1318 240 HOH HOH . I 5 HOH A 219 1319 189 HOH HOH . I 5 HOH A 220 1320 183 HOH HOH . I 5 HOH A 221 1321 264 HOH HOH . I 5 HOH A 222 1322 254 HOH HOH . I 5 HOH A 223 1323 205 HOH HOH . I 5 HOH A 224 1324 54 HOH HOH . I 5 HOH A 225 1325 101 HOH HOH . I 5 HOH A 226 1326 176 HOH HOH . I 5 HOH A 227 1327 151 HOH HOH . I 5 HOH A 228 1328 133 HOH HOH . I 5 HOH A 229 1329 150 HOH HOH . I 5 HOH A 230 1330 34 HOH HOH . I 5 HOH A 231 1331 106 HOH HOH . I 5 HOH A 232 1332 228 HOH HOH . I 5 HOH A 233 1333 173 HOH HOH . I 5 HOH A 234 1334 81 HOH HOH . I 5 HOH A 235 1335 69 HOH HOH . I 5 HOH A 236 1336 174 HOH HOH . I 5 HOH A 237 1337 113 HOH HOH . I 5 HOH A 238 1338 76 HOH HOH . I 5 HOH A 239 1339 138 HOH HOH . I 5 HOH A 240 1340 42 HOH HOH . I 5 HOH A 241 1341 175 HOH HOH . I 5 HOH A 242 1342 186 HOH HOH . I 5 HOH A 243 1343 146 HOH HOH . I 5 HOH A 244 1344 152 HOH HOH . I 5 HOH A 245 1345 65 HOH HOH . I 5 HOH A 246 1346 249 HOH HOH . I 5 HOH A 247 1347 72 HOH HOH . I 5 HOH A 248 1348 197 HOH HOH . I 5 HOH A 249 1349 231 HOH HOH . I 5 HOH A 250 1350 247 HOH HOH . I 5 HOH A 251 1351 36 HOH HOH . I 5 HOH A 252 1352 165 HOH HOH . I 5 HOH A 253 1353 94 HOH HOH . I 5 HOH A 254 1354 92 HOH HOH . I 5 HOH A 255 1355 115 HOH HOH . I 5 HOH A 256 1356 200 HOH HOH . I 5 HOH A 257 1357 63 HOH HOH . I 5 HOH A 258 1358 167 HOH HOH . I 5 HOH A 259 1359 47 HOH HOH . I 5 HOH A 260 1360 148 HOH HOH . I 5 HOH A 261 1361 201 HOH HOH . I 5 HOH A 262 1362 262 HOH HOH . I 5 HOH A 263 1363 104 HOH HOH . I 5 HOH A 264 1364 96 HOH HOH . I 5 HOH A 265 1365 156 HOH HOH . I 5 HOH A 266 1366 154 HOH HOH . I 5 HOH A 267 1367 261 HOH HOH . I 5 HOH A 268 1368 192 HOH HOH . I 5 HOH A 269 1369 250 HOH HOH . I 5 HOH A 270 1370 136 HOH HOH . I 5 HOH A 271 1371 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 -24.479 13.847 -35.432 1 38.57 ? C1 EDO 1004 A 1 HETATM 2 O O1 EDO . . . E 4 -24.153 12.493 -35.22 1 38.93 ? O1 EDO 1004 A 1 HETATM 3 C C2 EDO . . . E 4 -23.417 14.736 -34.787 1 35.68 ? C2 EDO 1004 A 1 HETATM 4 O O2 EDO . . . E 4 -23.779 16.121 -34.856 1 32.32 ? O2 EDO 1004 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 4 #