data_5FDX # _model_server_result.job_id 3NG3OUCuMXcAEQhzfiFs7w _model_server_result.datetime_utc '2024-11-22 00:02:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fdx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 5FDX # _exptl.entry_id 5FDX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.87 _cell.angle_gamma 90 _cell.entry_id 5FDX _cell.length_a 45.548 _cell.length_b 120.34 _cell.length_c 63.02 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FDX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1 B,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 J N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 115 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 691 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 122 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 698 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.048 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 156 n n C1 C2 EDO sing 157 n n C1 H11 EDO sing 158 n n C1 H12 EDO sing 159 n n O1 HO1 EDO sing 160 n n C2 O2 EDO sing 161 n n C2 H21 EDO sing 162 n n C2 H22 EDO sing 163 n n O2 HO2 EDO sing 164 n n # _atom_sites.entry_id 5FDX _atom_sites.fract_transf_matrix[1][1] 0.021955 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001871 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5X1 A 1 1001 1 5X1 DRG . D 3 EDO A 1 1002 1 EDO EDO . E 3 EDO A 1 1003 2 EDO EDO . F 3 EDO A 1 1004 3 EDO EDO . G 3 EDO A 1 1005 5 EDO EDO . H 4 PEG A 1 1006 1 PEG PEG . I 2 5X1 B 1 1001 2 5X1 DRG . J 3 EDO B 1 1002 4 EDO EDO . K 4 PEG B 1 1003 2 PEG PEG . L 4 PEG B 1 1004 3 PEG PEG . M 5 HOH A 1 1101 140 HOH HOH . M 5 HOH A 2 1102 12 HOH HOH . M 5 HOH A 3 1103 118 HOH HOH . M 5 HOH A 4 1104 32 HOH HOH . M 5 HOH A 5 1105 19 HOH HOH . M 5 HOH A 6 1106 5 HOH HOH . M 5 HOH A 7 1107 28 HOH HOH . M 5 HOH A 8 1108 2 HOH HOH . M 5 HOH A 9 1109 23 HOH HOH . M 5 HOH A 10 1110 4 HOH HOH . M 5 HOH A 11 1111 131 HOH HOH . M 5 HOH A 12 1112 56 HOH HOH . M 5 HOH A 13 1113 141 HOH HOH . M 5 HOH A 14 1114 54 HOH HOH . M 5 HOH A 15 1115 120 HOH HOH . M 5 HOH A 16 1116 115 HOH HOH . M 5 HOH A 17 1117 116 HOH HOH . M 5 HOH A 18 1118 36 HOH HOH . M 5 HOH A 19 1119 103 HOH HOH . M 5 HOH A 20 1120 90 HOH HOH . M 5 HOH A 21 1121 73 HOH HOH . M 5 HOH A 22 1122 35 HOH HOH . M 5 HOH A 23 1123 88 HOH HOH . M 5 HOH A 24 1124 44 HOH HOH . M 5 HOH A 25 1125 100 HOH HOH . M 5 HOH A 26 1126 47 HOH HOH . M 5 HOH A 27 1127 109 HOH HOH . M 5 HOH A 28 1128 83 HOH HOH . M 5 HOH A 29 1129 27 HOH HOH . M 5 HOH A 30 1130 104 HOH HOH . M 5 HOH A 31 1131 94 HOH HOH . M 5 HOH A 32 1132 58 HOH HOH . M 5 HOH A 33 1133 70 HOH HOH . M 5 HOH A 34 1134 93 HOH HOH . M 5 HOH A 35 1135 14 HOH HOH . M 5 HOH A 36 1136 62 HOH HOH . M 5 HOH A 37 1137 65 HOH HOH . M 5 HOH A 38 1138 138 HOH HOH . M 5 HOH A 39 1139 98 HOH HOH . M 5 HOH A 40 1140 66 HOH HOH . M 5 HOH A 41 1141 52 HOH HOH . M 5 HOH A 42 1142 101 HOH HOH . M 5 HOH A 43 1143 135 HOH HOH . M 5 HOH A 44 1144 105 HOH HOH . M 5 HOH A 45 1145 30 HOH HOH . M 5 HOH A 46 1146 59 HOH HOH . M 5 HOH A 47 1147 102 HOH HOH . M 5 HOH A 48 1148 86 HOH HOH . M 5 HOH A 49 1149 31 HOH HOH . M 5 HOH A 50 1150 71 HOH HOH . M 5 HOH A 51 1151 55 HOH HOH . M 5 HOH A 52 1152 16 HOH HOH . M 5 HOH A 53 1153 61 HOH HOH . M 5 HOH A 54 1154 91 HOH HOH . M 5 HOH A 55 1155 42 HOH HOH . M 5 HOH A 56 1156 33 HOH HOH . M 5 HOH A 57 1157 48 HOH HOH . M 5 HOH A 58 1158 124 HOH HOH . M 5 HOH A 59 1159 112 HOH HOH . M 5 HOH A 60 1160 75 HOH HOH . M 5 HOH A 61 1161 139 HOH HOH . M 5 HOH A 62 1162 72 HOH HOH . M 5 HOH A 63 1163 41 HOH HOH . M 5 HOH A 64 1164 130 HOH HOH . M 5 HOH A 65 1165 78 HOH HOH . M 5 HOH A 66 1166 64 HOH HOH . M 5 HOH A 67 1167 15 HOH HOH . M 5 HOH A 68 1168 92 HOH HOH . M 5 HOH A 69 1169 111 HOH HOH . M 5 HOH A 70 1170 117 HOH HOH . M 5 HOH A 71 1171 22 HOH HOH . M 5 HOH A 72 1172 122 HOH HOH . M 5 HOH A 73 1173 21 HOH HOH . M 5 HOH A 74 1174 77 HOH HOH . M 5 HOH A 75 1175 11 HOH HOH . N 5 HOH B 1 1101 126 HOH HOH . N 5 HOH B 2 1102 3 HOH HOH . N 5 HOH B 3 1103 87 HOH HOH . N 5 HOH B 4 1104 6 HOH HOH . N 5 HOH B 5 1105 13 HOH HOH . N 5 HOH B 6 1106 80 HOH HOH . N 5 HOH B 7 1107 95 HOH HOH . N 5 HOH B 8 1108 43 HOH HOH . N 5 HOH B 9 1109 8 HOH HOH . N 5 HOH B 10 1110 1 HOH HOH . N 5 HOH B 11 1111 37 HOH HOH . N 5 HOH B 12 1112 107 HOH HOH . N 5 HOH B 13 1113 10 HOH HOH . N 5 HOH B 14 1114 121 HOH HOH . N 5 HOH B 15 1115 18 HOH HOH . N 5 HOH B 16 1116 49 HOH HOH . N 5 HOH B 17 1117 7 HOH HOH . N 5 HOH B 18 1118 129 HOH HOH . N 5 HOH B 19 1119 17 HOH HOH . N 5 HOH B 20 1120 39 HOH HOH . N 5 HOH B 21 1121 60 HOH HOH . N 5 HOH B 22 1122 25 HOH HOH . N 5 HOH B 23 1123 114 HOH HOH . N 5 HOH B 24 1124 45 HOH HOH . N 5 HOH B 25 1125 51 HOH HOH . N 5 HOH B 26 1126 34 HOH HOH . N 5 HOH B 27 1127 63 HOH HOH . N 5 HOH B 28 1128 26 HOH HOH . N 5 HOH B 29 1129 53 HOH HOH . N 5 HOH B 30 1130 69 HOH HOH . N 5 HOH B 31 1131 119 HOH HOH . N 5 HOH B 32 1132 67 HOH HOH . N 5 HOH B 33 1133 24 HOH HOH . N 5 HOH B 34 1134 127 HOH HOH . N 5 HOH B 35 1135 142 HOH HOH . N 5 HOH B 36 1136 46 HOH HOH . N 5 HOH B 37 1137 106 HOH HOH . N 5 HOH B 38 1138 84 HOH HOH . N 5 HOH B 39 1139 57 HOH HOH . N 5 HOH B 40 1140 40 HOH HOH . N 5 HOH B 41 1141 110 HOH HOH . N 5 HOH B 42 1142 99 HOH HOH . N 5 HOH B 43 1143 38 HOH HOH . N 5 HOH B 44 1144 68 HOH HOH . N 5 HOH B 45 1145 79 HOH HOH . N 5 HOH B 46 1146 125 HOH HOH . N 5 HOH B 47 1147 97 HOH HOH . N 5 HOH B 48 1148 20 HOH HOH . N 5 HOH B 49 1149 74 HOH HOH . N 5 HOH B 50 1150 50 HOH HOH . N 5 HOH B 51 1151 136 HOH HOH . N 5 HOH B 52 1152 89 HOH HOH . N 5 HOH B 53 1153 132 HOH HOH . N 5 HOH B 54 1154 81 HOH HOH . N 5 HOH B 55 1155 128 HOH HOH . N 5 HOH B 56 1156 113 HOH HOH . N 5 HOH B 57 1157 123 HOH HOH . N 5 HOH B 58 1158 85 HOH HOH . N 5 HOH B 59 1159 76 HOH HOH . N 5 HOH B 60 1160 133 HOH HOH . N 5 HOH B 61 1161 137 HOH HOH . N 5 HOH B 62 1162 29 HOH HOH . N 5 HOH B 63 1163 82 HOH HOH . N 5 HOH B 64 1164 96 HOH HOH . N 5 HOH B 65 1165 9 HOH HOH . N 5 HOH B 66 1166 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 5.907 -42.166 -19.958 1 38.31 ? C1 EDO 1002 A 1 HETATM 2 O O1 EDO . . . D 3 6.393 -42.898 -18.868 1 36.95 ? O1 EDO 1002 A 1 HETATM 3 C C2 EDO . . . D 3 5.092 -43.08 -20.865 1 39.63 ? C2 EDO 1002 A 1 HETATM 4 O O2 EDO . . . D 3 5.731 -43.141 -22.143 1 40.03 ? O2 EDO 1002 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #