data_5FDX
#
_model_server_result.job_id            6XT1wg6tgnEh49JOQpOoKQ 
_model_server_result.datetime_utc      '2024-11-05 15:34:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fdx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1003}' 
#
_entry.id    5FDX 
#
_exptl.entry_id    5FDX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.87 
_cell.angle_gamma         90 
_cell.entry_id            5FDX 
_cell.length_a            45.548 
_cell.length_b            120.34 
_cell.length_c            63.02 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FDX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,M 1 1 
B,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 J N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             115 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              691 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             122 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              698 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.048 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 156 n n 
C1 C2 EDO sing 157 n n 
C1 H11 EDO sing 158 n n 
C1 H12 EDO sing 159 n n 
O1 HO1 EDO sing 160 n n 
C2 O2 EDO sing 161 n n 
C2 H21 EDO sing 162 n n 
C2 H22 EDO sing 163 n n 
O2 HO2 EDO sing 164 n n 
#
_atom_sites.entry_id                     5FDX 
_atom_sites.fract_transf_matrix[1][1]    0.021955 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001871 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00831 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015925 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5X1 A 1 1001 1 5X1 DRG . 
D 3 EDO A 1 1002 1 EDO EDO . 
E 3 EDO A 1 1003 2 EDO EDO . 
F 3 EDO A 1 1004 3 EDO EDO . 
G 3 EDO A 1 1005 5 EDO EDO . 
H 4 PEG A 1 1006 1 PEG PEG . 
I 2 5X1 B 1 1001 2 5X1 DRG . 
J 3 EDO B 1 1002 4 EDO EDO . 
K 4 PEG B 1 1003 2 PEG PEG . 
L 4 PEG B 1 1004 3 PEG PEG . 
M 5 HOH A 1 1101 140 HOH HOH . 
M 5 HOH A 2 1102 12 HOH HOH . 
M 5 HOH A 3 1103 118 HOH HOH . 
M 5 HOH A 4 1104 32 HOH HOH . 
M 5 HOH A 5 1105 19 HOH HOH . 
M 5 HOH A 6 1106 5 HOH HOH . 
M 5 HOH A 7 1107 28 HOH HOH . 
M 5 HOH A 8 1108 2 HOH HOH . 
M 5 HOH A 9 1109 23 HOH HOH . 
M 5 HOH A 10 1110 4 HOH HOH . 
M 5 HOH A 11 1111 131 HOH HOH . 
M 5 HOH A 12 1112 56 HOH HOH . 
M 5 HOH A 13 1113 141 HOH HOH . 
M 5 HOH A 14 1114 54 HOH HOH . 
M 5 HOH A 15 1115 120 HOH HOH . 
M 5 HOH A 16 1116 115 HOH HOH . 
M 5 HOH A 17 1117 116 HOH HOH . 
M 5 HOH A 18 1118 36 HOH HOH . 
M 5 HOH A 19 1119 103 HOH HOH . 
M 5 HOH A 20 1120 90 HOH HOH . 
M 5 HOH A 21 1121 73 HOH HOH . 
M 5 HOH A 22 1122 35 HOH HOH . 
M 5 HOH A 23 1123 88 HOH HOH . 
M 5 HOH A 24 1124 44 HOH HOH . 
M 5 HOH A 25 1125 100 HOH HOH . 
M 5 HOH A 26 1126 47 HOH HOH . 
M 5 HOH A 27 1127 109 HOH HOH . 
M 5 HOH A 28 1128 83 HOH HOH . 
M 5 HOH A 29 1129 27 HOH HOH . 
M 5 HOH A 30 1130 104 HOH HOH . 
M 5 HOH A 31 1131 94 HOH HOH . 
M 5 HOH A 32 1132 58 HOH HOH . 
M 5 HOH A 33 1133 70 HOH HOH . 
M 5 HOH A 34 1134 93 HOH HOH . 
M 5 HOH A 35 1135 14 HOH HOH . 
M 5 HOH A 36 1136 62 HOH HOH . 
M 5 HOH A 37 1137 65 HOH HOH . 
M 5 HOH A 38 1138 138 HOH HOH . 
M 5 HOH A 39 1139 98 HOH HOH . 
M 5 HOH A 40 1140 66 HOH HOH . 
M 5 HOH A 41 1141 52 HOH HOH . 
M 5 HOH A 42 1142 101 HOH HOH . 
M 5 HOH A 43 1143 135 HOH HOH . 
M 5 HOH A 44 1144 105 HOH HOH . 
M 5 HOH A 45 1145 30 HOH HOH . 
M 5 HOH A 46 1146 59 HOH HOH . 
M 5 HOH A 47 1147 102 HOH HOH . 
M 5 HOH A 48 1148 86 HOH HOH . 
M 5 HOH A 49 1149 31 HOH HOH . 
M 5 HOH A 50 1150 71 HOH HOH . 
M 5 HOH A 51 1151 55 HOH HOH . 
M 5 HOH A 52 1152 16 HOH HOH . 
M 5 HOH A 53 1153 61 HOH HOH . 
M 5 HOH A 54 1154 91 HOH HOH . 
M 5 HOH A 55 1155 42 HOH HOH . 
M 5 HOH A 56 1156 33 HOH HOH . 
M 5 HOH A 57 1157 48 HOH HOH . 
M 5 HOH A 58 1158 124 HOH HOH . 
M 5 HOH A 59 1159 112 HOH HOH . 
M 5 HOH A 60 1160 75 HOH HOH . 
M 5 HOH A 61 1161 139 HOH HOH . 
M 5 HOH A 62 1162 72 HOH HOH . 
M 5 HOH A 63 1163 41 HOH HOH . 
M 5 HOH A 64 1164 130 HOH HOH . 
M 5 HOH A 65 1165 78 HOH HOH . 
M 5 HOH A 66 1166 64 HOH HOH . 
M 5 HOH A 67 1167 15 HOH HOH . 
M 5 HOH A 68 1168 92 HOH HOH . 
M 5 HOH A 69 1169 111 HOH HOH . 
M 5 HOH A 70 1170 117 HOH HOH . 
M 5 HOH A 71 1171 22 HOH HOH . 
M 5 HOH A 72 1172 122 HOH HOH . 
M 5 HOH A 73 1173 21 HOH HOH . 
M 5 HOH A 74 1174 77 HOH HOH . 
M 5 HOH A 75 1175 11 HOH HOH . 
N 5 HOH B 1 1101 126 HOH HOH . 
N 5 HOH B 2 1102 3 HOH HOH . 
N 5 HOH B 3 1103 87 HOH HOH . 
N 5 HOH B 4 1104 6 HOH HOH . 
N 5 HOH B 5 1105 13 HOH HOH . 
N 5 HOH B 6 1106 80 HOH HOH . 
N 5 HOH B 7 1107 95 HOH HOH . 
N 5 HOH B 8 1108 43 HOH HOH . 
N 5 HOH B 9 1109 8 HOH HOH . 
N 5 HOH B 10 1110 1 HOH HOH . 
N 5 HOH B 11 1111 37 HOH HOH . 
N 5 HOH B 12 1112 107 HOH HOH . 
N 5 HOH B 13 1113 10 HOH HOH . 
N 5 HOH B 14 1114 121 HOH HOH . 
N 5 HOH B 15 1115 18 HOH HOH . 
N 5 HOH B 16 1116 49 HOH HOH . 
N 5 HOH B 17 1117 7 HOH HOH . 
N 5 HOH B 18 1118 129 HOH HOH . 
N 5 HOH B 19 1119 17 HOH HOH . 
N 5 HOH B 20 1120 39 HOH HOH . 
N 5 HOH B 21 1121 60 HOH HOH . 
N 5 HOH B 22 1122 25 HOH HOH . 
N 5 HOH B 23 1123 114 HOH HOH . 
N 5 HOH B 24 1124 45 HOH HOH . 
N 5 HOH B 25 1125 51 HOH HOH . 
N 5 HOH B 26 1126 34 HOH HOH . 
N 5 HOH B 27 1127 63 HOH HOH . 
N 5 HOH B 28 1128 26 HOH HOH . 
N 5 HOH B 29 1129 53 HOH HOH . 
N 5 HOH B 30 1130 69 HOH HOH . 
N 5 HOH B 31 1131 119 HOH HOH . 
N 5 HOH B 32 1132 67 HOH HOH . 
N 5 HOH B 33 1133 24 HOH HOH . 
N 5 HOH B 34 1134 127 HOH HOH . 
N 5 HOH B 35 1135 142 HOH HOH . 
N 5 HOH B 36 1136 46 HOH HOH . 
N 5 HOH B 37 1137 106 HOH HOH . 
N 5 HOH B 38 1138 84 HOH HOH . 
N 5 HOH B 39 1139 57 HOH HOH . 
N 5 HOH B 40 1140 40 HOH HOH . 
N 5 HOH B 41 1141 110 HOH HOH . 
N 5 HOH B 42 1142 99 HOH HOH . 
N 5 HOH B 43 1143 38 HOH HOH . 
N 5 HOH B 44 1144 68 HOH HOH . 
N 5 HOH B 45 1145 79 HOH HOH . 
N 5 HOH B 46 1146 125 HOH HOH . 
N 5 HOH B 47 1147 97 HOH HOH . 
N 5 HOH B 48 1148 20 HOH HOH . 
N 5 HOH B 49 1149 74 HOH HOH . 
N 5 HOH B 50 1150 50 HOH HOH . 
N 5 HOH B 51 1151 136 HOH HOH . 
N 5 HOH B 52 1152 89 HOH HOH . 
N 5 HOH B 53 1153 132 HOH HOH . 
N 5 HOH B 54 1154 81 HOH HOH . 
N 5 HOH B 55 1155 128 HOH HOH . 
N 5 HOH B 56 1156 113 HOH HOH . 
N 5 HOH B 57 1157 123 HOH HOH . 
N 5 HOH B 58 1158 85 HOH HOH . 
N 5 HOH B 59 1159 76 HOH HOH . 
N 5 HOH B 60 1160 133 HOH HOH . 
N 5 HOH B 61 1161 137 HOH HOH . 
N 5 HOH B 62 1162 29 HOH HOH . 
N 5 HOH B 63 1163 82 HOH HOH . 
N 5 HOH B 64 1164 96 HOH HOH . 
N 5 HOH B 65 1165 9 HOH HOH . 
N 5 HOH B 66 1166 134 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 3 6.301 -25.584 -6.438 1 47.45 ? C1 EDO 1003 A 1 
HETATM 2 O O1 EDO . . . E 3 5.125 -26.011 -5.809 1 45.03 ? O1 EDO 1003 A 1 
HETATM 3 C C2 EDO . . . E 3 5.942 -24.558 -7.514 1 52.96 ? C2 EDO 1003 A 1 
HETATM 4 O O2 EDO . . . E 3 5.235 -25.175 -8.606 1 55.83 ? O2 EDO 1003 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#