data_5FDZ # _model_server_result.job_id bHFqaeyr-kiEGsq29IlPyA _model_server_result.datetime_utc '2024-11-23 22:36:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fdz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 5FDZ # _exptl.entry_id 5FDZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.426 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-methyl-2-(oxan-4-yloxy)-5-(2-oxidanylidene-2-phenylazanyl-ethoxy)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FDZ _cell.length_a 99.77 _cell.length_b 99.77 _cell.length_c 100.9 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FDZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H24 N2 O5' _chem_comp.formula_weight 384.426 _chem_comp.id 5X0 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-methyl-2-(oxan-4-yloxy)-5-(2-oxidanylidene-2-phenylazanyl-ethoxy)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD CAE 5X0 doub 1 n y CAD CAF 5X0 sing 2 n y CAE CAG 5X0 sing 3 n y CAF CAH 5X0 doub 4 n y CAG CAX 5X0 doub 5 n y CAH CAX 5X0 sing 6 n y CAX NAR 5X0 sing 7 n n OAB CAV 5X0 doub 8 n n NAR CAV 5X0 sing 9 n n CAV CAP 5X0 sing 10 n n CAP OAT 5X0 sing 11 n n OAT CAY 5X0 sing 12 n n CAY CAK 5X0 doub 13 n y CAY CAI 5X0 sing 14 n y CAK CBA 5X0 sing 15 n y CAI CAJ 5X0 doub 16 n y OAC CAW 5X0 doub 17 n n CBA CAW 5X0 sing 18 n n CBA CAZ 5X0 doub 19 n y CAW NAQ 5X0 sing 20 n n CAJ CAZ 5X0 sing 21 n y CAZ OAU 5X0 sing 22 n n NAQ CAA 5X0 sing 23 n n OAU CBB 5X0 sing 24 n n CAO CBB 5X0 sing 25 n n CAO CAM 5X0 sing 26 n n CBB CAN 5X0 sing 27 n n CAM OAS 5X0 sing 28 n n CAN CAL 5X0 sing 29 n n OAS CAL 5X0 sing 30 n n CAN H1 5X0 sing 31 n n CAN H2 5X0 sing 32 n n CAL H3 5X0 sing 33 n n CAL H4 5X0 sing 34 n n CAM H5 5X0 sing 35 n n CAM H6 5X0 sing 36 n n CAO H7 5X0 sing 37 n n CAO H8 5X0 sing 38 n n CBB H9 5X0 sing 39 n n CAK H10 5X0 sing 40 n n NAQ H11 5X0 sing 41 n n CAA H12 5X0 sing 42 n n CAA H13 5X0 sing 43 n n CAA H14 5X0 sing 44 n n CAJ H15 5X0 sing 45 n n CAI H16 5X0 sing 46 n n CAP H17 5X0 sing 47 n n CAP H18 5X0 sing 48 n n NAR H19 5X0 sing 49 n n CAG H20 5X0 sing 50 n n CAE H21 5X0 sing 51 n n CAD H22 5X0 sing 52 n n CAF H23 5X0 sing 53 n n CAH H24 5X0 sing 54 n n # _atom_sites.entry_id 5FDZ _atom_sites.fract_transf_matrix[1][1] 0.010023 _atom_sites.fract_transf_matrix[1][2] 0.005787 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5X0 A 1 901 1 5X0 DRG . D 3 EDO B 1 901 1 EDO EDO . E 3 EDO B 1 902 2 EDO EDO . F 2 5X0 B 1 903 2 5X0 DRG . G 4 HOH A 1 1001 33 HOH HOH . G 4 HOH A 2 1002 65 HOH HOH . G 4 HOH A 3 1003 40 HOH HOH . G 4 HOH A 4 1004 78 HOH HOH . G 4 HOH A 5 1005 8 HOH HOH . G 4 HOH A 6 1006 51 HOH HOH . G 4 HOH A 7 1007 73 HOH HOH . G 4 HOH A 8 1008 41 HOH HOH . G 4 HOH A 9 1009 47 HOH HOH . G 4 HOH A 10 1010 35 HOH HOH . G 4 HOH A 11 1011 1 HOH HOH . G 4 HOH A 12 1012 76 HOH HOH . G 4 HOH A 13 1013 86 HOH HOH . G 4 HOH A 14 1014 109 HOH HOH . G 4 HOH A 15 1015 72 HOH HOH . G 4 HOH A 16 1016 2 HOH HOH . G 4 HOH A 17 1017 42 HOH HOH . G 4 HOH A 18 1018 25 HOH HOH . G 4 HOH A 19 1019 101 HOH HOH . G 4 HOH A 20 1020 32 HOH HOH . G 4 HOH A 21 1021 13 HOH HOH . G 4 HOH A 22 1022 3 HOH HOH . G 4 HOH A 23 1023 77 HOH HOH . G 4 HOH A 24 1024 83 HOH HOH . G 4 HOH A 25 1025 45 HOH HOH . G 4 HOH A 26 1026 14 HOH HOH . G 4 HOH A 27 1027 10 HOH HOH . G 4 HOH A 28 1028 85 HOH HOH . G 4 HOH A 29 1029 39 HOH HOH . G 4 HOH A 30 1030 46 HOH HOH . G 4 HOH A 31 1031 36 HOH HOH . G 4 HOH A 32 1032 30 HOH HOH . G 4 HOH A 33 1033 28 HOH HOH . G 4 HOH A 34 1034 37 HOH HOH . G 4 HOH A 35 1035 34 HOH HOH . G 4 HOH A 36 1036 114 HOH HOH . H 4 HOH B 1 1001 71 HOH HOH . H 4 HOH B 2 1002 96 HOH HOH . H 4 HOH B 3 1003 15 HOH HOH . H 4 HOH B 4 1004 107 HOH HOH . H 4 HOH B 5 1005 112 HOH HOH . H 4 HOH B 6 1006 62 HOH HOH . H 4 HOH B 7 1007 90 HOH HOH . H 4 HOH B 8 1008 67 HOH HOH . H 4 HOH B 9 1009 75 HOH HOH . H 4 HOH B 10 1010 4 HOH HOH . H 4 HOH B 11 1011 23 HOH HOH . H 4 HOH B 12 1012 20 HOH HOH . H 4 HOH B 13 1013 17 HOH HOH . H 4 HOH B 14 1014 29 HOH HOH . H 4 HOH B 15 1015 16 HOH HOH . H 4 HOH B 16 1016 19 HOH HOH . H 4 HOH B 17 1017 12 HOH HOH . H 4 HOH B 18 1018 104 HOH HOH . H 4 HOH B 19 1019 11 HOH HOH . H 4 HOH B 20 1020 68 HOH HOH . H 4 HOH B 21 1021 111 HOH HOH . H 4 HOH B 22 1022 18 HOH HOH . H 4 HOH B 23 1023 22 HOH HOH . H 4 HOH B 24 1024 60 HOH HOH . H 4 HOH B 25 1025 21 HOH HOH . H 4 HOH B 26 1026 57 HOH HOH . H 4 HOH B 27 1027 61 HOH HOH . H 4 HOH B 28 1028 88 HOH HOH . H 4 HOH B 29 1029 98 HOH HOH . H 4 HOH B 30 1030 63 HOH HOH . H 4 HOH B 31 1031 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAN 5X0 . . . C 2 -0.657 9.568 76.345 1 73.67 ? CAN 5X0 901 A 1 HETATM 2 C CAL 5X0 . . . C 2 -1.709 8.991 77.249 1 75.26 ? CAL 5X0 901 A 1 HETATM 3 O OAS 5X0 . . . C 2 -2.913 8.75 76.501 1 75.52 ? OAS 5X0 901 A 1 HETATM 4 C CAM 5X0 . . . C 2 -2.722 7.681 75.592 1 77.2 ? CAM 5X0 901 A 1 HETATM 5 C CAO 5X0 . . . C 2 -1.608 8.008 74.62 1 73.75 ? CAO 5X0 901 A 1 HETATM 6 C CBB 5X0 . . . C 2 -1.042 9.393 74.855 1 70.97 ? CBB 5X0 901 A 1 HETATM 7 O OAU 5X0 . . . C 2 0.177 9.676 74.028 1 69.79 ? OAU 5X0 901 A 1 HETATM 8 C CAZ 5X0 . . . C 2 0.326 9.27 72.7 1 68.69 ? CAZ 5X0 901 A 1 HETATM 9 C CBA 5X0 . . . C 2 0.371 10.268 71.677 1 66.21 ? CBA 5X0 901 A 1 HETATM 10 C CAK 5X0 . . . C 2 0.558 9.821 70.351 1 68.71 ? CAK 5X0 901 A 1 HETATM 11 C CAW 5X0 . . . C 2 0.247 11.676 71.869 1 61.91 ? CAW 5X0 901 A 1 HETATM 12 O OAC 5X0 . . . C 2 0.696 12.455 71.032 1 62.64 ? OAC 5X0 901 A 1 HETATM 13 N NAQ 5X0 . . . C 2 -0.406 12.118 72.958 1 60.24 ? NAQ 5X0 901 A 1 HETATM 14 C CAA 5X0 . . . C 2 -0.52 13.566 73.168 1 60.95 ? CAA 5X0 901 A 1 HETATM 15 C CAJ 5X0 . . . C 2 0.488 7.911 72.348 1 68.78 ? CAJ 5X0 901 A 1 HETATM 16 C CAI 5X0 . . . C 2 0.658 7.51 71.017 1 71.16 ? CAI 5X0 901 A 1 HETATM 17 C CAY 5X0 . . . C 2 0.706 8.476 70.006 1 70.83 ? CAY 5X0 901 A 1 HETATM 18 O OAT 5X0 . . . C 2 0.852 8.189 68.673 1 72.92 ? OAT 5X0 901 A 1 HETATM 19 C CAP 5X0 . . . C 2 1.472 6.968 68.232 1 77.13 ? CAP 5X0 901 A 1 HETATM 20 C CAV 5X0 . . . C 2 1.725 7.051 66.711 1 78.96 ? CAV 5X0 901 A 1 HETATM 21 O OAB 5X0 . . . C 2 2.153 6.073 66.093 1 82.28 ? OAB 5X0 901 A 1 HETATM 22 N NAR 5X0 . . . C 2 1.441 8.258 66.166 1 79.25 ? NAR 5X0 901 A 1 HETATM 23 C CAX 5X0 . . . C 2 1.638 8.481 64.86 1 79.84 ? CAX 5X0 901 A 1 HETATM 24 C CAG 5X0 . . . C 2 0.788 7.918 63.902 1 79.22 ? CAG 5X0 901 A 1 HETATM 25 C CAE 5X0 . . . C 2 1.003 8.191 62.545 1 79.68 ? CAE 5X0 901 A 1 HETATM 26 C CAD 5X0 . . . C 2 2.055 9.029 62.147 1 78.62 ? CAD 5X0 901 A 1 HETATM 27 C CAF 5X0 . . . C 2 2.897 9.603 63.104 1 76.82 ? CAF 5X0 901 A 1 HETATM 28 C CAH 5X0 . . . C 2 2.683 9.331 64.455 1 77.82 ? CAH 5X0 901 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #