data_5FDZ
#
_model_server_result.job_id            a5vZQjPK8KWz7Qx-an4fxw 
_model_server_result.datetime_utc      '2024-11-23 22:25:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fdz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":902}' 
#
_entry.id    5FDZ 
#
_exptl.entry_id    5FDZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5FDZ 
_cell.length_a            99.77 
_cell.length_b            99.77 
_cell.length_c            100.9 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FDZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 137 n n 
C1 C2 EDO sing 138 n n 
C1 H11 EDO sing 139 n n 
C1 H12 EDO sing 140 n n 
O1 HO1 EDO sing 141 n n 
C2 O2 EDO sing 142 n n 
C2 H21 EDO sing 143 n n 
C2 H22 EDO sing 144 n n 
O2 HO2 EDO sing 145 n n 
#
_atom_sites.entry_id                     5FDZ 
_atom_sites.fract_transf_matrix[1][1]    0.010023 
_atom_sites.fract_transf_matrix[1][2]    0.005787 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011574 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009911 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5X0 A 1 901 1 5X0 DRG . 
D 3 EDO B 1 901 1 EDO EDO . 
E 3 EDO B 1 902 2 EDO EDO . 
F 2 5X0 B 1 903 2 5X0 DRG . 
G 4 HOH A 1 1001 33 HOH HOH . 
G 4 HOH A 2 1002 65 HOH HOH . 
G 4 HOH A 3 1003 40 HOH HOH . 
G 4 HOH A 4 1004 78 HOH HOH . 
G 4 HOH A 5 1005 8 HOH HOH . 
G 4 HOH A 6 1006 51 HOH HOH . 
G 4 HOH A 7 1007 73 HOH HOH . 
G 4 HOH A 8 1008 41 HOH HOH . 
G 4 HOH A 9 1009 47 HOH HOH . 
G 4 HOH A 10 1010 35 HOH HOH . 
G 4 HOH A 11 1011 1 HOH HOH . 
G 4 HOH A 12 1012 76 HOH HOH . 
G 4 HOH A 13 1013 86 HOH HOH . 
G 4 HOH A 14 1014 109 HOH HOH . 
G 4 HOH A 15 1015 72 HOH HOH . 
G 4 HOH A 16 1016 2 HOH HOH . 
G 4 HOH A 17 1017 42 HOH HOH . 
G 4 HOH A 18 1018 25 HOH HOH . 
G 4 HOH A 19 1019 101 HOH HOH . 
G 4 HOH A 20 1020 32 HOH HOH . 
G 4 HOH A 21 1021 13 HOH HOH . 
G 4 HOH A 22 1022 3 HOH HOH . 
G 4 HOH A 23 1023 77 HOH HOH . 
G 4 HOH A 24 1024 83 HOH HOH . 
G 4 HOH A 25 1025 45 HOH HOH . 
G 4 HOH A 26 1026 14 HOH HOH . 
G 4 HOH A 27 1027 10 HOH HOH . 
G 4 HOH A 28 1028 85 HOH HOH . 
G 4 HOH A 29 1029 39 HOH HOH . 
G 4 HOH A 30 1030 46 HOH HOH . 
G 4 HOH A 31 1031 36 HOH HOH . 
G 4 HOH A 32 1032 30 HOH HOH . 
G 4 HOH A 33 1033 28 HOH HOH . 
G 4 HOH A 34 1034 37 HOH HOH . 
G 4 HOH A 35 1035 34 HOH HOH . 
G 4 HOH A 36 1036 114 HOH HOH . 
H 4 HOH B 1 1001 71 HOH HOH . 
H 4 HOH B 2 1002 96 HOH HOH . 
H 4 HOH B 3 1003 15 HOH HOH . 
H 4 HOH B 4 1004 107 HOH HOH . 
H 4 HOH B 5 1005 112 HOH HOH . 
H 4 HOH B 6 1006 62 HOH HOH . 
H 4 HOH B 7 1007 90 HOH HOH . 
H 4 HOH B 8 1008 67 HOH HOH . 
H 4 HOH B 9 1009 75 HOH HOH . 
H 4 HOH B 10 1010 4 HOH HOH . 
H 4 HOH B 11 1011 23 HOH HOH . 
H 4 HOH B 12 1012 20 HOH HOH . 
H 4 HOH B 13 1013 17 HOH HOH . 
H 4 HOH B 14 1014 29 HOH HOH . 
H 4 HOH B 15 1015 16 HOH HOH . 
H 4 HOH B 16 1016 19 HOH HOH . 
H 4 HOH B 17 1017 12 HOH HOH . 
H 4 HOH B 18 1018 104 HOH HOH . 
H 4 HOH B 19 1019 11 HOH HOH . 
H 4 HOH B 20 1020 68 HOH HOH . 
H 4 HOH B 21 1021 111 HOH HOH . 
H 4 HOH B 22 1022 18 HOH HOH . 
H 4 HOH B 23 1023 22 HOH HOH . 
H 4 HOH B 24 1024 60 HOH HOH . 
H 4 HOH B 25 1025 21 HOH HOH . 
H 4 HOH B 26 1026 57 HOH HOH . 
H 4 HOH B 27 1027 61 HOH HOH . 
H 4 HOH B 28 1028 88 HOH HOH . 
H 4 HOH B 29 1029 98 HOH HOH . 
H 4 HOH B 30 1030 63 HOH HOH . 
H 4 HOH B 31 1031 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 3 10.549 38.055 71.506 1 109.12 ? C1 EDO 902 B 1 
HETATM 2 O O1 EDO . . . E 3 9.167 38.411 71.395 1 103.82 ? O1 EDO 902 B 1 
HETATM 3 C C2 EDO . . . E 3 11.066 37.558 70.158 1 110.38 ? C2 EDO 902 B 1 
HETATM 4 O O2 EDO . . . E 3 12.171 36.667 70.357 1 107.9 ? O2 EDO 902 B 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#