data_5FE2 # _model_server_result.job_id vrQcikG3v5HDEwfBOVenww _model_server_result.datetime_utc '2024-11-13 04:34:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fe2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":902}' # _entry.id 5FE2 # _exptl.entry_id 5FE2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FE2 _cell.length_a 99.45 _cell.length_b 99.45 _cell.length_c 100.51 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FE2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I 1 1 B,E,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 104 n n C1 C2 EDO sing 105 n n C1 H11 EDO sing 106 n n C1 H12 EDO sing 107 n n O1 HO1 EDO sing 108 n n C2 O2 EDO sing 109 n n C2 H21 EDO sing 110 n n C2 H22 EDO sing 111 n n O2 HO2 EDO sing 112 n n # _atom_sites.entry_id 5FE2 _atom_sites.fract_transf_matrix[1][1] 0.010055 _atom_sites.fract_transf_matrix[1][2] 0.005805 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5WV A 1 901 1 5WV DRG . D 3 EDO A 1 902 5 EDO EDO . E 2 5WV B 1 901 2 5WV DRG . F 3 EDO B 1 902 2 EDO EDO . G 3 EDO B 1 903 3 EDO EDO . H 3 EDO B 1 904 4 EDO EDO . I 4 HOH A 1 1001 68 HOH HOH . I 4 HOH A 2 1002 82 HOH HOH . I 4 HOH A 3 1003 14 HOH HOH . I 4 HOH A 4 1004 120 HOH HOH . I 4 HOH A 5 1005 65 HOH HOH . I 4 HOH A 6 1006 61 HOH HOH . I 4 HOH A 7 1007 36 HOH HOH . I 4 HOH A 8 1008 24 HOH HOH . I 4 HOH A 9 1009 67 HOH HOH . I 4 HOH A 10 1010 13 HOH HOH . I 4 HOH A 11 1011 63 HOH HOH . I 4 HOH A 12 1012 66 HOH HOH . I 4 HOH A 13 1013 81 HOH HOH . I 4 HOH A 14 1014 119 HOH HOH . I 4 HOH A 15 1015 117 HOH HOH . I 4 HOH A 16 1016 71 HOH HOH . I 4 HOH A 17 1017 75 HOH HOH . I 4 HOH A 18 1018 121 HOH HOH . I 4 HOH A 19 1019 69 HOH HOH . I 4 HOH A 20 1020 87 HOH HOH . I 4 HOH A 21 1021 78 HOH HOH . I 4 HOH A 22 1022 2 HOH HOH . I 4 HOH A 23 1023 50 HOH HOH . I 4 HOH A 24 1024 57 HOH HOH . I 4 HOH A 25 1025 74 HOH HOH . I 4 HOH A 26 1026 118 HOH HOH . I 4 HOH A 27 1027 11 HOH HOH . I 4 HOH A 28 1028 76 HOH HOH . I 4 HOH A 29 1029 5 HOH HOH . I 4 HOH A 30 1030 79 HOH HOH . I 4 HOH A 31 1031 60 HOH HOH . I 4 HOH A 32 1032 51 HOH HOH . I 4 HOH A 33 1033 12 HOH HOH . I 4 HOH A 34 1034 116 HOH HOH . I 4 HOH A 35 1035 10 HOH HOH . I 4 HOH A 36 1036 70 HOH HOH . I 4 HOH A 37 1037 49 HOH HOH . I 4 HOH A 38 1038 54 HOH HOH . I 4 HOH A 39 1039 62 HOH HOH . I 4 HOH A 40 1040 72 HOH HOH . I 4 HOH A 41 1041 89 HOH HOH . I 4 HOH A 42 1042 77 HOH HOH . I 4 HOH A 43 1043 64 HOH HOH . I 4 HOH A 44 1044 53 HOH HOH . I 4 HOH A 45 1045 88 HOH HOH . I 4 HOH A 46 1046 42 HOH HOH . J 4 HOH B 1 1001 16 HOH HOH . J 4 HOH B 2 1002 37 HOH HOH . J 4 HOH B 3 1003 1 HOH HOH . J 4 HOH B 4 1004 34 HOH HOH . J 4 HOH B 5 1005 22 HOH HOH . J 4 HOH B 6 1006 110 HOH HOH . J 4 HOH B 7 1007 17 HOH HOH . J 4 HOH B 8 1008 123 HOH HOH . J 4 HOH B 9 1009 86 HOH HOH . J 4 HOH B 10 1010 41 HOH HOH . J 4 HOH B 11 1011 30 HOH HOH . J 4 HOH B 12 1012 8 HOH HOH . J 4 HOH B 13 1013 99 HOH HOH . J 4 HOH B 14 1014 32 HOH HOH . J 4 HOH B 15 1015 3 HOH HOH . J 4 HOH B 16 1016 15 HOH HOH . J 4 HOH B 17 1017 96 HOH HOH . J 4 HOH B 18 1018 40 HOH HOH . J 4 HOH B 19 1019 44 HOH HOH . J 4 HOH B 20 1020 84 HOH HOH . J 4 HOH B 21 1021 23 HOH HOH . J 4 HOH B 22 1022 19 HOH HOH . J 4 HOH B 23 1023 38 HOH HOH . J 4 HOH B 24 1024 7 HOH HOH . J 4 HOH B 25 1025 26 HOH HOH . J 4 HOH B 26 1026 4 HOH HOH . J 4 HOH B 27 1027 29 HOH HOH . J 4 HOH B 28 1028 107 HOH HOH . J 4 HOH B 29 1029 20 HOH HOH . J 4 HOH B 30 1030 126 HOH HOH . J 4 HOH B 31 1031 90 HOH HOH . J 4 HOH B 32 1032 85 HOH HOH . J 4 HOH B 33 1033 18 HOH HOH . J 4 HOH B 34 1034 100 HOH HOH . J 4 HOH B 35 1035 35 HOH HOH . J 4 HOH B 36 1036 94 HOH HOH . J 4 HOH B 37 1037 122 HOH HOH . J 4 HOH B 38 1038 111 HOH HOH . J 4 HOH B 39 1039 97 HOH HOH . J 4 HOH B 40 1040 9 HOH HOH . J 4 HOH B 41 1041 95 HOH HOH . J 4 HOH B 42 1042 59 HOH HOH . J 4 HOH B 43 1043 28 HOH HOH . J 4 HOH B 44 1044 112 HOH HOH . J 4 HOH B 45 1045 6 HOH HOH . J 4 HOH B 46 1046 105 HOH HOH . J 4 HOH B 47 1047 25 HOH HOH . J 4 HOH B 48 1048 93 HOH HOH . J 4 HOH B 49 1049 58 HOH HOH . J 4 HOH B 50 1050 108 HOH HOH . J 4 HOH B 51 1051 109 HOH HOH . J 4 HOH B 52 1052 31 HOH HOH . J 4 HOH B 53 1053 128 HOH HOH . J 4 HOH B 54 1054 124 HOH HOH . J 4 HOH B 55 1055 43 HOH HOH . J 4 HOH B 56 1056 106 HOH HOH . J 4 HOH B 57 1057 47 HOH HOH . J 4 HOH B 58 1058 56 HOH HOH . J 4 HOH B 59 1059 21 HOH HOH . J 4 HOH B 60 1060 127 HOH HOH . J 4 HOH B 61 1061 98 HOH HOH . J 4 HOH B 62 1062 46 HOH HOH . J 4 HOH B 63 1063 113 HOH HOH . J 4 HOH B 64 1064 114 HOH HOH . J 4 HOH B 65 1065 125 HOH HOH . J 4 HOH B 66 1066 83 HOH HOH . J 4 HOH B 67 1067 92 HOH HOH . J 4 HOH B 68 1068 104 HOH HOH . J 4 HOH B 69 1069 48 HOH HOH . J 4 HOH B 70 1070 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . A . F 3 -17.054 17.61 -30.48 0.5 52.73 ? C1 EDO 902 B 1 HETATM 2 C C1 EDO . B . F 3 -16.267 16.515 -29.662 0.5 50.48 ? C1 EDO 902 B 1 HETATM 3 O O1 EDO . A . F 3 -17.112 18.359 -29.256 0.5 51.9 ? O1 EDO 902 B 1 HETATM 4 O O1 EDO . B . F 3 -15.24 15.615 -29.215 0.5 47.13 ? O1 EDO 902 B 1 HETATM 5 C C2 EDO . A . F 3 -18.042 18.158 -31.51 0.5 54 ? C2 EDO 902 B 1 HETATM 6 C C2 EDO . B . F 3 -16.758 16.108 -31.048 0.5 51.85 ? C2 EDO 902 B 1 HETATM 7 O O2 EDO . A . F 3 -17.854 17.497 -32.772 0.5 54.45 ? O2 EDO 902 B 1 HETATM 8 O O2 EDO . B . F 3 -16.731 17.249 -31.921 0.5 53.83 ? O2 EDO 902 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #