data_5FE8
#
_model_server_result.job_id            y6mfBEBUd-doIfrh-vf1Vw 
_model_server_result.datetime_utc      '2024-11-23 23:30:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fe8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":904}' 
#
_entry.id    5FE8 
#
_exptl.entry_id    5FE8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5FE8 
_cell.length_a            99.67 
_cell.length_b            99.67 
_cell.length_c            99.625 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FE8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1 
B,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 124 n n 
C1 C2 EDO sing 125 n n 
C1 H11 EDO sing 126 n n 
C1 H12 EDO sing 127 n n 
O1 HO1 EDO sing 128 n n 
C2 O2 EDO sing 129 n n 
C2 H21 EDO sing 130 n n 
C2 H22 EDO sing 131 n n 
O2 HO2 EDO sing 132 n n 
#
_atom_sites.entry_id                     5FE8 
_atom_sites.fract_transf_matrix[1][1]    0.010033 
_atom_sites.fract_transf_matrix[1][2]    0.005793 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011585 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010038 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5WT A 1 901 1 5WT DRG . 
D 3 EDO A 1 902 1 EDO EDO . 
E 3 EDO A 1 903 2 EDO EDO . 
F 3 EDO A 1 904 3 EDO EDO . 
G 3 EDO A 1 905 8 EDO EDO . 
H 3 EDO B 1 901 4 EDO EDO . 
I 3 EDO B 1 902 5 EDO EDO . 
J 3 EDO B 1 903 6 EDO EDO . 
K 3 EDO B 1 904 7 EDO EDO . 
L 4 DMS B 1 905 10 DMS DMS . 
M 5 HOH A 1 1001 183 HOH HOH . 
M 5 HOH A 2 1002 28 HOH HOH . 
M 5 HOH A 3 1003 211 HOH HOH . 
M 5 HOH A 4 1004 187 HOH HOH . 
M 5 HOH A 5 1005 3 HOH HOH . 
M 5 HOH A 6 1006 36 HOH HOH . 
M 5 HOH A 7 1007 149 HOH HOH . 
M 5 HOH A 8 1008 90 HOH HOH . 
M 5 HOH A 9 1009 44 HOH HOH . 
M 5 HOH A 10 1010 94 HOH HOH . 
M 5 HOH A 11 1011 53 HOH HOH . 
M 5 HOH A 12 1012 279 HOH HOH . 
M 5 HOH A 13 1013 19 HOH HOH . 
M 5 HOH A 14 1014 33 HOH HOH . 
M 5 HOH A 15 1015 22 HOH HOH . 
M 5 HOH A 16 1016 70 HOH HOH . 
M 5 HOH A 17 1017 153 HOH HOH . 
M 5 HOH A 18 1018 154 HOH HOH . 
M 5 HOH A 19 1019 109 HOH HOH . 
M 5 HOH A 20 1020 170 HOH HOH . 
M 5 HOH A 21 1021 156 HOH HOH . 
M 5 HOH A 22 1022 283 HOH HOH . 
M 5 HOH A 23 1023 115 HOH HOH . 
M 5 HOH A 24 1024 29 HOH HOH . 
M 5 HOH A 25 1025 63 HOH HOH . 
M 5 HOH A 26 1026 98 HOH HOH . 
M 5 HOH A 27 1027 68 HOH HOH . 
M 5 HOH A 28 1028 87 HOH HOH . 
M 5 HOH A 29 1029 217 HOH HOH . 
M 5 HOH A 30 1030 46 HOH HOH . 
M 5 HOH A 31 1031 50 HOH HOH . 
M 5 HOH A 32 1032 201 HOH HOH . 
M 5 HOH A 33 1033 152 HOH HOH . 
M 5 HOH A 34 1034 265 HOH HOH . 
M 5 HOH A 35 1035 58 HOH HOH . 
M 5 HOH A 36 1036 216 HOH HOH . 
M 5 HOH A 37 1037 199 HOH HOH . 
M 5 HOH A 38 1038 144 HOH HOH . 
M 5 HOH A 39 1039 74 HOH HOH . 
M 5 HOH A 40 1040 32 HOH HOH . 
M 5 HOH A 41 1041 2 HOH HOH . 
M 5 HOH A 42 1042 89 HOH HOH . 
M 5 HOH A 43 1043 128 HOH HOH . 
M 5 HOH A 44 1044 139 HOH HOH . 
M 5 HOH A 45 1045 243 HOH HOH . 
M 5 HOH A 46 1046 82 HOH HOH . 
M 5 HOH A 47 1047 65 HOH HOH . 
M 5 HOH A 48 1048 134 HOH HOH . 
M 5 HOH A 49 1049 174 HOH HOH . 
M 5 HOH A 50 1050 200 HOH HOH . 
M 5 HOH A 51 1051 86 HOH HOH . 
M 5 HOH A 52 1052 188 HOH HOH . 
M 5 HOH A 53 1053 45 HOH HOH . 
M 5 HOH A 54 1054 81 HOH HOH . 
M 5 HOH A 55 1055 23 HOH HOH . 
M 5 HOH A 56 1056 30 HOH HOH . 
M 5 HOH A 57 1057 71 HOH HOH . 
M 5 HOH A 58 1058 66 HOH HOH . 
M 5 HOH A 59 1059 207 HOH HOH . 
M 5 HOH A 60 1060 17 HOH HOH . 
M 5 HOH A 61 1061 59 HOH HOH . 
M 5 HOH A 62 1062 18 HOH HOH . 
M 5 HOH A 63 1063 39 HOH HOH . 
M 5 HOH A 64 1064 75 HOH HOH . 
M 5 HOH A 65 1065 20 HOH HOH . 
M 5 HOH A 66 1066 155 HOH HOH . 
M 5 HOH A 67 1067 41 HOH HOH . 
M 5 HOH A 68 1068 25 HOH HOH . 
M 5 HOH A 69 1069 14 HOH HOH . 
M 5 HOH A 70 1070 131 HOH HOH . 
M 5 HOH A 71 1071 47 HOH HOH . 
M 5 HOH A 72 1072 129 HOH HOH . 
M 5 HOH A 73 1073 173 HOH HOH . 
M 5 HOH A 74 1074 132 HOH HOH . 
M 5 HOH A 75 1075 151 HOH HOH . 
M 5 HOH A 76 1076 138 HOH HOH . 
M 5 HOH A 77 1077 244 HOH HOH . 
M 5 HOH A 78 1078 137 HOH HOH . 
M 5 HOH A 79 1079 185 HOH HOH . 
M 5 HOH A 80 1080 99 HOH HOH . 
M 5 HOH A 81 1081 194 HOH HOH . 
M 5 HOH A 82 1082 172 HOH HOH . 
M 5 HOH A 83 1083 247 HOH HOH . 
M 5 HOH A 84 1084 280 HOH HOH . 
M 5 HOH A 85 1085 148 HOH HOH . 
M 5 HOH A 86 1086 251 HOH HOH . 
M 5 HOH A 87 1087 135 HOH HOH . 
M 5 HOH A 88 1088 206 HOH HOH . 
M 5 HOH A 89 1089 101 HOH HOH . 
M 5 HOH A 90 1090 76 HOH HOH . 
M 5 HOH A 91 1091 267 HOH HOH . 
M 5 HOH A 92 1092 253 HOH HOH . 
M 5 HOH A 93 1093 191 HOH HOH . 
M 5 HOH A 94 1094 256 HOH HOH . 
M 5 HOH A 95 1095 186 HOH HOH . 
M 5 HOH A 96 1096 140 HOH HOH . 
M 5 HOH A 97 1097 114 HOH HOH . 
M 5 HOH A 98 1098 203 HOH HOH . 
M 5 HOH A 99 1099 245 HOH HOH . 
M 5 HOH A 100 1100 121 HOH HOH . 
M 5 HOH A 101 1101 119 HOH HOH . 
M 5 HOH A 102 1102 189 HOH HOH . 
M 5 HOH A 103 1103 79 HOH HOH . 
M 5 HOH A 104 1104 184 HOH HOH . 
M 5 HOH A 105 1105 141 HOH HOH . 
M 5 HOH A 106 1106 208 HOH HOH . 
M 5 HOH A 107 1107 106 HOH HOH . 
M 5 HOH A 108 1108 248 HOH HOH . 
M 5 HOH A 109 1109 261 HOH HOH . 
M 5 HOH A 110 1110 77 HOH HOH . 
M 5 HOH A 111 1111 190 HOH HOH . 
M 5 HOH A 112 1112 260 HOH HOH . 
N 5 HOH B 1 1001 55 HOH HOH . 
N 5 HOH B 2 1002 147 HOH HOH . 
N 5 HOH B 3 1003 108 HOH HOH . 
N 5 HOH B 4 1004 105 HOH HOH . 
N 5 HOH B 5 1005 80 HOH HOH . 
N 5 HOH B 6 1006 197 HOH HOH . 
N 5 HOH B 7 1007 73 HOH HOH . 
N 5 HOH B 8 1008 273 HOH HOH . 
N 5 HOH B 9 1009 60 HOH HOH . 
N 5 HOH B 10 1010 167 HOH HOH . 
N 5 HOH B 11 1011 177 HOH HOH . 
N 5 HOH B 12 1012 21 HOH HOH . 
N 5 HOH B 13 1013 269 HOH HOH . 
N 5 HOH B 14 1014 57 HOH HOH . 
N 5 HOH B 15 1015 49 HOH HOH . 
N 5 HOH B 16 1016 160 HOH HOH . 
N 5 HOH B 17 1017 4 HOH HOH . 
N 5 HOH B 18 1018 237 HOH HOH . 
N 5 HOH B 19 1019 258 HOH HOH . 
N 5 HOH B 20 1020 64 HOH HOH . 
N 5 HOH B 21 1021 56 HOH HOH . 
N 5 HOH B 22 1022 165 HOH HOH . 
N 5 HOH B 23 1023 270 HOH HOH . 
N 5 HOH B 24 1024 54 HOH HOH . 
N 5 HOH B 25 1025 254 HOH HOH . 
N 5 HOH B 26 1026 142 HOH HOH . 
N 5 HOH B 27 1027 276 HOH HOH . 
N 5 HOH B 28 1028 43 HOH HOH . 
N 5 HOH B 29 1029 13 HOH HOH . 
N 5 HOH B 30 1030 232 HOH HOH . 
N 5 HOH B 31 1031 166 HOH HOH . 
N 5 HOH B 32 1032 24 HOH HOH . 
N 5 HOH B 33 1033 246 HOH HOH . 
N 5 HOH B 34 1034 51 HOH HOH . 
N 5 HOH B 35 1035 27 HOH HOH . 
N 5 HOH B 36 1036 107 HOH HOH . 
N 5 HOH B 37 1037 72 HOH HOH . 
N 5 HOH B 38 1038 26 HOH HOH . 
N 5 HOH B 39 1039 96 HOH HOH . 
N 5 HOH B 40 1040 97 HOH HOH . 
N 5 HOH B 41 1041 164 HOH HOH . 
N 5 HOH B 42 1042 62 HOH HOH . 
N 5 HOH B 43 1043 67 HOH HOH . 
N 5 HOH B 44 1044 257 HOH HOH . 
N 5 HOH B 45 1045 233 HOH HOH . 
N 5 HOH B 46 1046 52 HOH HOH . 
N 5 HOH B 47 1047 11 HOH HOH . 
N 5 HOH B 48 1048 146 HOH HOH . 
N 5 HOH B 49 1049 104 HOH HOH . 
N 5 HOH B 50 1050 10 HOH HOH . 
N 5 HOH B 51 1051 9 HOH HOH . 
N 5 HOH B 52 1052 15 HOH HOH . 
N 5 HOH B 53 1053 42 HOH HOH . 
N 5 HOH B 54 1054 91 HOH HOH . 
N 5 HOH B 55 1055 31 HOH HOH . 
N 5 HOH B 56 1056 61 HOH HOH . 
N 5 HOH B 57 1057 69 HOH HOH . 
N 5 HOH B 58 1058 1 HOH HOH . 
N 5 HOH B 59 1059 238 HOH HOH . 
N 5 HOH B 60 1060 204 HOH HOH . 
N 5 HOH B 61 1061 281 HOH HOH . 
N 5 HOH B 62 1062 7 HOH HOH . 
N 5 HOH B 63 1063 37 HOH HOH . 
N 5 HOH B 64 1064 271 HOH HOH . 
N 5 HOH B 65 1065 5 HOH HOH . 
N 5 HOH B 66 1066 228 HOH HOH . 
N 5 HOH B 67 1067 93 HOH HOH . 
N 5 HOH B 68 1068 16 HOH HOH . 
N 5 HOH B 69 1069 159 HOH HOH . 
N 5 HOH B 70 1070 78 HOH HOH . 
N 5 HOH B 71 1071 145 HOH HOH . 
N 5 HOH B 72 1072 84 HOH HOH . 
N 5 HOH B 73 1073 234 HOH HOH . 
N 5 HOH B 74 1074 230 HOH HOH . 
N 5 HOH B 75 1075 176 HOH HOH . 
N 5 HOH B 76 1076 193 HOH HOH . 
N 5 HOH B 77 1077 100 HOH HOH . 
N 5 HOH B 78 1078 210 HOH HOH . 
N 5 HOH B 79 1079 150 HOH HOH . 
N 5 HOH B 80 1080 278 HOH HOH . 
N 5 HOH B 81 1081 240 HOH HOH . 
N 5 HOH B 82 1082 8 HOH HOH . 
N 5 HOH B 83 1083 168 HOH HOH . 
N 5 HOH B 84 1084 213 HOH HOH . 
N 5 HOH B 85 1085 171 HOH HOH . 
N 5 HOH B 86 1086 264 HOH HOH . 
N 5 HOH B 87 1087 231 HOH HOH . 
N 5 HOH B 88 1088 209 HOH HOH . 
N 5 HOH B 89 1089 158 HOH HOH . 
N 5 HOH B 90 1090 218 HOH HOH . 
N 5 HOH B 91 1091 225 HOH HOH . 
N 5 HOH B 92 1092 179 HOH HOH . 
N 5 HOH B 93 1093 116 HOH HOH . 
N 5 HOH B 94 1094 162 HOH HOH . 
N 5 HOH B 95 1095 133 HOH HOH . 
N 5 HOH B 96 1096 249 HOH HOH . 
N 5 HOH B 97 1097 126 HOH HOH . 
N 5 HOH B 98 1098 161 HOH HOH . 
N 5 HOH B 99 1099 157 HOH HOH . 
N 5 HOH B 100 1100 169 HOH HOH . 
N 5 HOH B 101 1101 259 HOH HOH . 
N 5 HOH B 102 1102 226 HOH HOH . 
N 5 HOH B 103 1103 242 HOH HOH . 
N 5 HOH B 104 1104 229 HOH HOH . 
N 5 HOH B 105 1105 227 HOH HOH . 
N 5 HOH B 106 1106 263 HOH HOH . 
N 5 HOH B 107 1107 178 HOH HOH . 
N 5 HOH B 108 1108 88 HOH HOH . 
N 5 HOH B 109 1109 239 HOH HOH . 
N 5 HOH B 110 1110 120 HOH HOH . 
N 5 HOH B 111 1111 175 HOH HOH . 
N 5 HOH B 112 1112 180 HOH HOH . 
N 5 HOH B 113 1113 143 HOH HOH . 
N 5 HOH B 114 1114 117 HOH HOH . 
N 5 HOH B 115 1115 124 HOH HOH . 
N 5 HOH B 116 1116 123 HOH HOH . 
N 5 HOH B 117 1117 122 HOH HOH . 
N 5 HOH B 118 1118 205 HOH HOH . 
N 5 HOH B 119 1119 125 HOH HOH . 
N 5 HOH B 120 1120 282 HOH HOH . 
N 5 HOH B 121 1121 277 HOH HOH . 
N 5 HOH B 122 1122 262 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . K 3 30.446 30.405 113.862 1 56.86 ? C1 EDO 904 B 1 
HETATM 2 O O1 EDO . . . K 3 31.058 29.811 115.007 1 57.02 ? O1 EDO 904 B 1 
HETATM 3 C C2 EDO . . . K 3 29.094 30.962 114.274 1 52.67 ? C2 EDO 904 B 1 
HETATM 4 O O2 EDO . . . K 3 29.282 32.185 114.975 1 48.33 ? O2 EDO 904 B 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           46 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#