data_5FED # _model_server_result.job_id 3mqZxjQ4xRq_iY3q9N1LRw _model_server_result.datetime_utc '2024-11-18 03:17:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fed # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 5FED # _exptl.entry_id 5FED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 472.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[7-methyl-1-[(3~{R})-1-propanoylazepan-3-yl]benzimidazol-2-yl]-3-(trifluoromethyl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FED _cell.length_a 145.584 _cell.length_b 145.584 _cell.length_c 145.584 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FED _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 103 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 797 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C32 _struct_conn.ptnr2_label_comp_id 5X4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 5X4 _struct_conn.ptnr2_auth_seq_id 1101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.833 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H27 F3 N4 O2' _chem_comp.formula_weight 472.503 _chem_comp.id 5X4 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[7-methyl-1-[(3~{R})-1-propanoylazepan-3-yl]benzimidazol-2-yl]-3-(trifluoromethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F20 C17 5X4 sing 1 n n F18 C17 5X4 sing 2 n n C17 C16 5X4 sing 3 n n C17 F19 5X4 sing 4 n n C15 C14 5X4 doub 5 n y C15 C16 5X4 sing 6 n y C14 C13 5X4 sing 7 n y C16 C21 5X4 doub 8 n y C13 C12 5X4 doub 9 n y C21 C12 5X4 sing 10 n y C12 C11 5X4 sing 11 n n C27 C28 5X4 sing 12 n n C27 C26 5X4 sing 13 n n C11 O22 5X4 doub 14 n n C11 N10 5X4 sing 15 n n C28 N29 5X4 sing 16 n n C26 C25 5X4 sing 17 n n N10 C09 5X4 sing 18 n n C25 C24 5X4 sing 19 n n N29 C34 5X4 sing 20 n n N29 C30 5X4 sing 21 n n C34 C24 5X4 sing 22 n n C09 N08 5X4 sing 23 n y C09 N23 5X4 doub 24 n y C32 C31 5X4 sing 25 n n C24 N08 5X4 sing 26 n n C31 C30 5X4 sing 27 n n C30 O33 5X4 doub 28 n n N08 C07 5X4 sing 29 n y N23 C06 5X4 sing 30 n y C07 C06 5X4 doub 31 n y C07 C02 5X4 sing 32 n y C06 C05 5X4 sing 33 n y C01 C02 5X4 sing 34 n n C02 C03 5X4 doub 35 n y C05 C04 5X4 doub 36 n y C03 C04 5X4 sing 37 n y C13 H1 5X4 sing 38 n n C14 H2 5X4 sing 39 n n C15 H3 5X4 sing 40 n n C21 H4 5X4 sing 41 n n C24 H5 5X4 sing 42 n n C25 H6 5X4 sing 43 n n C25 H7 5X4 sing 44 n n C26 H8 5X4 sing 45 n n C26 H9 5X4 sing 46 n n C27 H10 5X4 sing 47 n n C27 H11 5X4 sing 48 n n C28 H12 5X4 sing 49 n n C28 H13 5X4 sing 50 n n C01 H14 5X4 sing 51 n n C01 H15 5X4 sing 52 n n C01 H16 5X4 sing 53 n n C03 H17 5X4 sing 54 n n C04 H18 5X4 sing 55 n n C05 H19 5X4 sing 56 n n N10 H20 5X4 sing 57 n n C31 H21 5X4 sing 58 n n C31 H22 5X4 sing 59 n n C32 H23 5X4 sing 60 n n C32 H24 5X4 sing 61 n n C32 H25 5X4 sing 62 n n C34 H26 5X4 sing 63 n n C34 H27 5X4 sing 64 n n # _atom_sites.entry_id 5FED _atom_sites.fract_transf_matrix[1][1] 0.006869 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006869 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5X4 A 1 1101 1 5X4 LI1 . C 3 HOH A 1 1201 27 HOH HOH . C 3 HOH A 2 1202 26 HOH HOH . C 3 HOH A 3 1203 15 HOH HOH . C 3 HOH A 4 1204 6 HOH HOH . C 3 HOH A 5 1205 11 HOH HOH . C 3 HOH A 6 1206 21 HOH HOH . C 3 HOH A 7 1207 23 HOH HOH . C 3 HOH A 8 1208 9 HOH HOH . C 3 HOH A 9 1209 14 HOH HOH . C 3 HOH A 10 1210 25 HOH HOH . C 3 HOH A 11 1211 7 HOH HOH . C 3 HOH A 12 1212 1 HOH HOH . C 3 HOH A 13 1213 3 HOH HOH . C 3 HOH A 14 1214 5 HOH HOH . C 3 HOH A 15 1215 2 HOH HOH . C 3 HOH A 16 1216 8 HOH HOH . C 3 HOH A 17 1217 10 HOH HOH . C 3 HOH A 18 1218 4 HOH HOH . C 3 HOH A 19 1219 20 HOH HOH . C 3 HOH A 20 1220 13 HOH HOH . C 3 HOH A 21 1221 12 HOH HOH . C 3 HOH A 22 1222 19 HOH HOH . C 3 HOH A 23 1223 16 HOH HOH . C 3 HOH A 24 1224 18 HOH HOH . C 3 HOH A 25 1225 22 HOH HOH . C 3 HOH A 26 1226 17 HOH HOH . C 3 HOH A 27 1227 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 5X4 . . . B 2 1.42 53.308 -21.15 1 67.59 ? C11 5X4 1101 A 1 HETATM 2 C C12 5X4 . . . B 2 1.087 53.505 -22.576 1 73.08 ? C12 5X4 1101 A 1 HETATM 3 C C13 5X4 . . . B 2 1.544 54.574 -23.345 1 75.78 ? C13 5X4 1101 A 1 HETATM 4 C C14 5X4 . . . B 2 1.172 54.714 -24.68 1 78.31 ? C14 5X4 1101 A 1 HETATM 5 C C15 5X4 . . . B 2 0.332 53.791 -25.291 1 82.95 ? C15 5X4 1101 A 1 HETATM 6 C C16 5X4 . . . B 2 -0.141 52.723 -24.532 1 86.91 ? C16 5X4 1101 A 1 HETATM 7 C C17 5X4 . . . B 2 -1.061 51.716 -25.194 1 98.19 ? C17 5X4 1101 A 1 HETATM 8 C C21 5X4 . . . B 2 0.23 52.593 -23.203 1 78.17 ? C21 5X4 1101 A 1 HETATM 9 C C24 5X4 . . . B 2 -0.845 50.326 -18.794 1 80.69 ? C24 5X4 1101 A 1 HETATM 10 C C25 5X4 . . . B 2 -0.474 49.584 -20.069 1 80.57 ? C25 5X4 1101 A 1 HETATM 11 C C26 5X4 . . . B 2 -1.459 48.452 -20.324 1 83.21 ? C26 5X4 1101 A 1 HETATM 12 C C27 5X4 . . . B 2 -2.67 48.797 -21.219 1 84.67 ? C27 5X4 1101 A 1 HETATM 13 C C28 5X4 . . . B 2 -3.471 50.062 -20.832 1 81.22 ? C28 5X4 1101 A 1 HETATM 14 C C30 5X4 . . . B 2 -4.23 50.244 -18.503 1 72.13 ? C30 5X4 1101 A 1 HETATM 15 C C01 5X4 . . . B 2 -0.663 49.519 -15.532 1 75.26 ? C01 5X4 1101 A 1 HETATM 16 C C02 5X4 . . . B 2 0.372 50.584 -15.659 1 74.91 ? C02 5X4 1101 A 1 HETATM 17 C C03 5X4 . . . B 2 1.076 50.936 -14.501 1 70.3 ? C03 5X4 1101 A 1 HETATM 18 C C04 5X4 . . . B 2 2.077 51.918 -14.505 1 69.78 ? C04 5X4 1101 A 1 HETATM 19 C C05 5X4 . . . B 2 2.4 52.581 -15.678 1 73.67 ? C05 5X4 1101 A 1 HETATM 20 C C06 5X4 . . . B 2 1.705 52.256 -16.876 1 75.59 ? C06 5X4 1101 A 1 HETATM 21 C C07 5X4 . . . B 2 0.691 51.26 -16.882 1 76.31 ? C07 5X4 1101 A 1 HETATM 22 N N08 5X4 . . . B 2 0.238 51.2 -18.272 1 76.07 ? N08 5X4 1101 A 1 HETATM 23 C C09 5X4 . . . B 2 0.99 52.159 -18.993 1 68.95 ? C09 5X4 1101 A 1 HETATM 24 N N10 5X4 . . . B 2 0.781 52.388 -20.349 1 65.31 ? N10 5X4 1101 A 1 HETATM 25 F F18 5X4 . . . B 2 -0.618 51.238 -26.379 1 103.06 ? F18 5X4 1101 A 1 HETATM 26 F F19 5X4 . . . B 2 -1.314 50.624 -24.425 1 100.64 ? F19 5X4 1101 A 1 HETATM 27 F F20 5X4 . . . B 2 -2.298 52.194 -25.493 1 103.93 ? F20 5X4 1101 A 1 HETATM 28 O O22 5X4 . . . B 2 2.295 54.007 -20.643 1 64.75 ? O22 5X4 1101 A 1 HETATM 29 N N23 5X4 . . . B 2 1.862 52.796 -18.188 1 71.6 ? N23 5X4 1101 A 1 HETATM 30 N N29 5X4 . . . B 2 -3.258 50.496 -19.454 1 77.07 ? N29 5X4 1101 A 1 HETATM 31 C C31 5X4 . . . B 2 -5.496 49.542 -18.862 1 65.32 ? C31 5X4 1101 A 1 HETATM 32 C C32 5X4 . . . B 2 -6.762 50.281 -18.453 1 60.92 ? C32 5X4 1101 A 1 HETATM 33 O O33 5X4 . . . B 2 -4.007 50.631 -17.348 1 74.65 ? O33 5X4 1101 A 1 HETATM 34 C C34 5X4 . . . B 2 -2.067 51.192 -19.023 1 80.03 ? C34 5X4 1101 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 482 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 34 #