data_5FEF # _model_server_result.job_id dYLXqTT6HL4fVi11u83vAw _model_server_result.datetime_utc '2024-12-21 13:22:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5FEF # _exptl.entry_id 5FEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FEF _cell.length_a 58.531 _cell.length_b 58.531 _cell.length_c 135.195 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5FEF _atom_sites.fract_transf_matrix[1][1] 0.017085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL GOL . C 2 GOL A 1 202 3 GOL GOL . D 2 GOL A 1 203 4 GOL GOL . E 2 GOL A 1 204 5 GOL GOL . F 2 GOL A 1 205 6 GOL GOL . G 3 HOH A 1 301 13 HOH HOH . G 3 HOH A 2 302 30 HOH HOH . G 3 HOH A 3 303 1 HOH HOH . G 3 HOH A 4 304 23 HOH HOH . G 3 HOH A 5 305 5 HOH HOH . G 3 HOH A 6 306 2 HOH HOH . G 3 HOH A 7 307 6 HOH HOH . G 3 HOH A 8 308 14 HOH HOH . G 3 HOH A 9 309 16 HOH HOH . G 3 HOH A 10 310 9 HOH HOH . G 3 HOH A 11 311 4 HOH HOH . G 3 HOH A 12 312 19 HOH HOH . G 3 HOH A 13 313 3 HOH HOH . G 3 HOH A 14 314 7 HOH HOH . G 3 HOH A 15 315 11 HOH HOH . G 3 HOH A 16 316 15 HOH HOH . G 3 HOH A 17 317 10 HOH HOH . G 3 HOH A 18 318 25 HOH HOH . G 3 HOH A 19 319 21 HOH HOH . G 3 HOH A 20 320 29 HOH HOH . G 3 HOH A 21 321 27 HOH HOH . G 3 HOH A 22 322 18 HOH HOH . G 3 HOH A 23 323 8 HOH HOH . G 3 HOH A 24 324 31 HOH HOH . G 3 HOH A 25 325 24 HOH HOH . G 3 HOH A 26 326 20 HOH HOH . G 3 HOH A 27 327 26 HOH HOH . G 3 HOH A 28 328 32 HOH HOH . G 3 HOH A 29 329 17 HOH HOH . G 3 HOH A 30 330 22 HOH HOH . G 3 HOH A 31 331 12 HOH HOH . G 3 HOH A 32 332 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 -4.126 -15.72 5.807 1 75.76 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 2 -2.737 -15.872 5.961 1 66.44 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 2 -4.49 -16.401 4.502 1 84.85 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 2 -3.696 -17.557 4.353 1 90.76 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 2 -5.96 -16.785 4.524 1 85.56 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 2 -6.333 -17.162 3.217 1 83.01 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #